Wall clock time and date at job start Tue Mar 9 2021 12:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00902 * 1 3 3 H 1.00894 * 109.46827 * 1 2 4 4 H 1.00899 * 109.47323 * 239.99806 * 1 2 3 5 5 C 1.46900 * 109.46623 * 119.99596 * 1 2 3 6 6 H 1.09000 * 109.47427 * 299.99826 * 5 1 2 7 7 C 1.52997 * 109.47369 * 60.00396 * 5 1 2 8 8 C 1.52999 * 109.47528 * 179.97438 * 7 5 1 9 9 C 1.52997 * 109.47018 * 300.00105 * 8 7 5 10 10 H 1.09009 * 109.47184 * 299.99597 * 9 8 7 11 11 N 1.46500 * 109.47113 * 179.97438 * 9 8 7 12 12 C 1.34784 * 119.99987 * 154.99884 * 11 9 8 13 13 O 1.21564 * 119.99713 * 359.97438 * 12 11 9 14 14 C 1.47797 * 119.99722 * 180.02562 * 12 11 9 15 15 C 1.39560 * 119.95478 * 180.02562 * 14 12 11 16 16 N 1.31880 * 120.03887 * 179.97438 * 15 14 12 17 17 C 1.33274 * 119.94941 * 359.97438 * 16 15 14 18 18 C 1.47327 * 120.03871 * 180.02562 * 17 16 15 19 19 C 1.36131 * 125.33167 * 0.02562 * 18 17 16 20 20 C 1.37651 * 114.47279 * 179.97438 * 19 18 17 21 21 C 1.33798 * 115.18431 * 0.02562 * 20 19 18 22 22 C 1.50699 * 125.03230 * 180.02562 * 21 20 19 23 23 O 1.42902 * 109.47269 * 299.99893 * 22 21 20 24 24 Si 1.86303 * 109.47350 * 179.97438 * 22 21 20 25 25 S 1.75834 * 109.93856 * 359.73206 * 21 20 19 26 26 C 1.40311 * 119.91518 * 359.97438 * 17 16 15 27 27 N 1.31421 * 119.96049 * 0.02562 * 26 17 16 28 28 C 1.52994 * 109.47377 * 59.99790 * 9 8 7 29 29 C 1.52999 * 109.47217 * 300.00087 * 28 9 8 30 30 H 1.09000 * 109.47312 * 59.99359 * 7 5 1 31 31 H 1.09003 * 109.47028 * 300.00049 * 7 5 1 32 32 H 1.08998 * 109.47289 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.46683 * 59.99652 * 8 7 5 34 34 H 0.97001 * 119.99976 * 334.99960 * 11 9 8 35 35 H 1.07991 * 119.97641 * 359.96727 * 15 14 12 36 36 H 1.07996 * 122.76340 * 0.02562 * 19 18 17 37 37 H 1.08004 * 122.40947 * 180.02562 * 20 19 18 38 38 H 1.09003 * 109.47283 * 59.99392 * 22 21 20 39 39 H 0.96697 * 114.00194 * 180.02562 * 23 22 21 40 40 H 1.48498 * 109.99851 * 60.00077 * 24 22 21 41 41 H 1.48506 * 110.00014 * 181.31941 * 24 22 21 42 42 H 1.08005 * 120.01787 * 180.02562 * 26 17 16 43 43 H 1.09000 * 109.47413 * 59.99786 * 28 9 8 44 44 H 1.09008 * 109.47381 * 180.02562 * 28 9 8 45 45 H 1.09008 * 109.47312 * 300.00037 * 29 28 9 46 46 H 1.09000 * 109.47529 * 180.02562 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3363 0.9513 0.0000 4 1 -0.3364 -0.4757 0.8238 5 6 -0.4895 -0.6924 -1.1995 6 1 -0.1262 -0.1785 -2.0895 7 6 0.0204 -2.1349 -1.1996 8 6 -0.4900 -2.8563 -2.4486 9 6 -2.0200 -2.8563 -2.4481 10 1 -2.3831 -3.3701 -1.5579 11 7 -2.5087 -3.5465 -3.6443 12 6 -3.7307 -4.1151 -3.6423 13 8 -4.4271 -4.0555 -2.6477 14 6 -4.2235 -4.8119 -4.8490 15 6 -5.4892 -5.3998 -4.8461 16 7 -5.9307 -6.0216 -5.9221 17 6 -5.1675 -6.0876 -7.0127 18 6 -5.6590 -6.7812 -8.2159 19 6 -6.8708 -7.3902 -8.3338 20 6 -7.1005 -7.9705 -9.5607 21 6 -6.1029 -7.8482 -10.4440 22 6 -6.1183 -8.3966 -11.8476 23 8 -6.2777 -9.8160 -11.8028 24 14 -4.5131 -7.9778 -12.6956 25 16 -4.7748 -6.9457 -9.7275 26 6 -3.8957 -5.4949 -7.0137 27 7 -3.4592 -4.8762 -5.9395 28 6 -2.5300 -1.4138 -2.4481 29 6 -2.0196 -0.6924 -1.1991 30 1 -0.3429 -2.6488 -0.3096 31 1 1.1104 -2.1349 -1.1995 32 1 -0.1263 -3.8838 -2.4488 33 1 -0.1269 -2.3425 -3.3387 34 1 -1.9528 -3.5943 -4.4378 35 1 -6.1073 -5.3457 -3.9623 36 1 -7.5929 -7.4151 -7.5311 37 1 -8.0197 -8.4873 -9.7937 38 1 -6.9472 -7.9552 -12.4011 39 1 -6.2959 -10.2374 -12.6729 40 1 -3.3749 -8.5735 -11.9508 41 1 -4.5284 -8.4855 -14.0911 42 1 -3.2760 -5.5471 -7.8967 43 1 -2.1669 -0.9000 -3.3382 44 1 -3.6201 -1.4138 -2.4473 45 1 -2.3826 -1.2062 -0.3088 46 1 -2.3833 0.3351 -1.1988 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081486_17088084.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:30 Heat of formation + Delta-G solvation = 94.045846 kcal Electronic energy + Delta-G solvation = -28646.395321 eV Core-core repulsion = 24553.519998 eV Total energy + Delta-G solvation = -4092.875322 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.133 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.54286 -41.35871 -40.28468 -39.29606 -37.69535 -37.43752 -35.87017 -34.35366 -33.83443 -32.01116 -31.23561 -29.50475 -27.94436 -26.04783 -25.33180 -24.18703 -23.90518 -23.47156 -21.99150 -21.53236 -20.58511 -19.57917 -19.12337 -18.64075 -18.46986 -18.44520 -18.28345 -17.49247 -17.20354 -17.03412 -16.75973 -16.44245 -16.25761 -15.89715 -15.74237 -15.19457 -15.13029 -14.89890 -14.66754 -14.20557 -14.19626 -14.11136 -13.89810 -13.66797 -13.39836 -13.36711 -13.07670 -12.91113 -12.83681 -12.63486 -12.49630 -12.44419 -12.25471 -11.86509 -11.69335 -11.65667 -11.46216 -11.17428 -10.61737 -10.50430 -10.25391 -9.61380 -9.42687 -5.11529 -1.39721 -0.29628 -0.07419 0.17241 0.57026 1.12807 1.33488 1.51438 1.56153 1.69674 1.82973 1.85235 2.50535 2.59980 2.73459 3.03706 3.10988 3.25144 3.25957 3.42160 3.58967 3.65620 3.68115 3.70323 3.77255 3.89872 3.95735 4.11063 4.21218 4.22021 4.28315 4.36442 4.38608 4.47468 4.49443 4.57839 4.64529 4.70880 4.83391 4.87775 4.97443 4.98754 5.06595 5.08182 5.08378 5.17342 5.22631 5.27693 5.40032 5.73600 6.16055 6.37243 6.48566 6.89631 Molecular weight = 362.13amu Principal moments of inertia in cm(-1) A = 0.024611 B = 0.001757 C = 0.001673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.407456 B =15928.126533 C =16736.833623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 H 0.451 0.549 3 H 0.450 0.550 4 H 0.442 0.558 5 C 0.053 3.947 6 H 0.158 0.842 7 C -0.137 4.137 8 C -0.126 4.126 9 C 0.130 3.870 10 H 0.077 0.923 11 N -0.698 5.698 12 C 0.582 3.418 13 O -0.555 6.555 14 C 0.001 3.999 15 C 0.120 3.880 16 N -0.453 5.453 17 C 0.180 3.820 18 C -0.193 4.193 19 C -0.075 4.075 20 C -0.125 4.125 21 C -0.165 4.165 22 C -0.047 4.047 23 O -0.553 6.553 24 Si 0.715 3.285 25 S 0.194 5.806 26 C 0.061 3.939 27 N -0.395 5.395 28 C -0.133 4.133 29 C -0.137 4.137 30 H 0.093 0.907 31 H 0.118 0.882 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.419 0.581 35 H 0.191 0.809 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.113 0.887 39 H 0.400 0.600 40 H -0.272 1.272 41 H -0.259 1.259 42 H 0.200 0.800 43 H 0.083 0.917 44 H 0.045 0.955 45 H 0.090 0.910 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.364 27.270 24.127 42.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.020 5.020 2 H 0.283 0.717 3 H 0.282 0.718 4 H 0.273 0.727 5 C -0.053 4.053 6 H 0.175 0.825 7 C -0.175 4.175 8 C -0.164 4.164 9 C 0.026 3.974 10 H 0.095 0.905 11 N -0.349 5.349 12 C 0.366 3.634 13 O -0.433 6.433 14 C -0.139 4.139 15 C -0.042 4.042 16 N -0.168 5.168 17 C 0.039 3.961 18 C -0.311 4.311 19 C -0.109 4.109 20 C -0.155 4.155 21 C -0.283 4.283 22 C -0.158 4.158 23 O -0.364 6.364 24 Si 0.616 3.384 25 S 0.461 5.539 26 C -0.104 4.104 27 N -0.111 5.111 28 C -0.172 4.172 29 C -0.176 4.176 30 H 0.111 0.889 31 H 0.136 0.864 32 H 0.089 0.911 33 H 0.110 0.890 34 H 0.256 0.744 35 H 0.208 0.792 36 H 0.170 0.830 37 H 0.171 0.829 38 H 0.131 0.869 39 H 0.252 0.748 40 H -0.198 1.198 41 H -0.184 1.184 42 H 0.217 0.783 43 H 0.101 0.899 44 H 0.064 0.936 45 H 0.109 0.891 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 23.970 27.522 24.403 43.904 hybrid contribution -2.352 -2.197 -0.353 3.238 sum 21.618 25.325 24.051 41.074 Atomic orbital electron populations 1.42233 1.22128 1.20914 1.16675 0.71676 0.71835 0.72750 1.22853 0.96020 0.96094 0.90318 0.82489 1.21974 1.03940 0.92583 0.98980 1.21741 0.91147 1.02821 1.00724 1.21447 0.95752 0.92911 0.87243 0.90525 1.45898 1.16083 1.54436 1.18471 1.17455 0.82665 0.78235 0.85026 1.90833 1.57482 1.61051 1.33929 1.22249 0.94469 1.02149 0.95033 1.23999 0.93866 0.89560 0.96750 1.68663 1.34142 1.14722 0.99299 1.20294 0.91841 0.92784 0.91138 1.22863 1.00654 1.10383 0.97216 1.20839 0.95985 0.95747 0.98308 1.20147 1.01112 1.01671 0.92533 1.24271 0.98001 1.05801 1.00275 1.24311 1.12599 0.83817 0.95107 1.86551 1.95246 1.18474 1.36178 0.94689 0.74118 0.90959 0.78592 1.83747 1.16736 1.51279 1.02134 1.24075 0.93879 0.94354 0.98069 1.68274 1.32680 1.11710 0.98473 1.21852 1.00833 0.94340 1.00156 1.21946 0.92897 1.03812 0.98901 0.88851 0.86392 0.91131 0.88987 0.74379 0.79195 0.83024 0.82900 0.86945 0.74800 1.19827 1.18358 0.78294 0.89857 0.93645 0.89136 0.87389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 47.56 4.15 -168.68 -0.70 46.86 16 2 H 0.45 -36.57 8.96 -89.69 -0.80 -37.37 16 3 H 0.45 -36.12 8.96 -89.70 -0.80 -36.93 16 4 H 0.44 -34.75 8.90 -89.69 -0.80 -35.55 16 5 C 0.05 -3.41 3.03 44.92 0.14 -3.27 16 6 H 0.16 -10.34 8.14 -2.39 -0.02 -10.36 16 7 C -0.14 7.68 5.43 30.59 0.17 7.85 16 8 C -0.13 5.52 5.39 30.59 0.16 5.69 16 9 C 0.13 -4.59 2.45 44.99 0.11 -4.48 16 10 H 0.08 -2.38 7.58 -2.38 -0.02 -2.39 16 11 N -0.70 18.60 5.07 -445.44 -2.26 16.34 16 12 C 0.58 -10.12 7.77 86.77 0.67 -9.45 16 13 O -0.56 6.55 15.99 -3.92 -0.06 6.49 16 14 C 0.00 -0.02 6.75 41.77 0.28 0.27 16 15 C 0.12 -1.40 10.76 85.00 0.91 -0.48 16 16 N -0.45 4.02 10.12 -183.54 -1.86 2.16 16 17 C 0.18 -2.00 6.75 41.82 0.28 -1.72 16 18 C -0.19 2.10 6.41 24.17 0.15 2.26 16 19 C -0.08 0.73 9.90 21.64 0.21 0.94 16 20 C -0.12 1.26 9.98 21.12 0.21 1.47 16 21 C -0.17 1.86 5.76 24.68 0.14 2.00 16 22 C -0.05 0.65 2.95 71.24 0.21 0.86 16 23 O -0.55 5.80 12.83 -148.98 -1.91 3.89 16 24 Si 0.72 -10.52 30.95 68.60 2.12 -8.39 16 25 S 0.19 -2.75 19.45 -56.49 -1.10 -3.85 16 26 C 0.06 -0.96 10.78 85.26 0.92 -0.04 16 27 N -0.40 6.44 9.68 -183.34 -1.78 4.66 16 28 C -0.13 5.21 5.49 30.59 0.17 5.38 16 29 C -0.14 7.32 5.43 30.60 0.17 7.49 16 30 H 0.09 -5.19 8.14 -2.39 -0.02 -5.21 16 31 H 0.12 -7.02 8.14 -2.39 -0.02 -7.04 16 32 H 0.07 -2.72 8.14 -2.39 -0.02 -2.74 16 33 H 0.09 -4.15 8.14 -2.39 -0.02 -4.17 16 34 H 0.42 -11.98 7.94 -92.71 -0.74 -12.72 16 35 H 0.19 -2.60 7.63 -2.92 -0.02 -2.62 16 36 H 0.15 -1.51 8.01 -2.91 -0.02 -1.53 16 37 H 0.15 -1.75 8.06 -2.91 -0.02 -1.77 16 38 H 0.11 -2.03 7.96 -2.39 -0.02 -2.05 16 39 H 0.40 -7.33 8.74 -74.06 -0.65 -7.98 16 40 H -0.27 2.31 7.11 99.48 0.71 3.02 16 41 H -0.26 2.79 7.11 99.48 0.71 3.50 16 42 H 0.20 -4.22 7.28 -2.91 -0.02 -4.24 16 43 H 0.08 -3.35 8.14 -2.39 -0.02 -3.37 16 44 H 0.04 -1.32 8.14 -2.38 -0.02 -1.34 16 45 H 0.09 -4.74 8.14 -2.38 -0.02 -4.76 16 46 H 0.11 -5.99 8.14 -2.39 -0.02 -6.01 16 Total: 1.00 -95.41 390.80 -5.30 -100.71 By element: Atomic # 1 Polarization: -180.95 SS G_CDS: -2.68 Total: -183.63 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: 4.92 Total: 14.76 kcal Atomic # 7 Polarization: 76.62 SS G_CDS: -6.59 Total: 70.03 kcal Atomic # 8 Polarization: 12.35 SS G_CDS: -1.97 Total: 10.38 kcal Atomic # 14 Polarization: -10.52 SS G_CDS: 2.12 Total: -8.39 kcal Atomic # 16 Polarization: -2.75 SS G_CDS: -1.10 Total: -3.85 kcal Total: -95.41 -5.30 -100.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081486_17088084.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.761 kcal (2) G-P(sol) polarization free energy of solvation -95.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds