Wall clock time and date at job start Tue Mar 9 2021 12:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00900 * 1 3 3 H 1.00900 * 109.46472 * 1 2 4 4 H 1.00901 * 109.46717 * 240.00687 * 1 2 3 5 5 C 1.46888 * 109.47409 * 120.00164 * 1 2 3 6 6 H 1.09000 * 112.91082 * 288.75231 * 5 1 2 7 7 C 1.53786 * 113.61561 * 60.00356 * 5 1 2 8 8 C 1.53781 * 87.17350 * 89.15683 * 7 5 1 9 9 H 1.08997 * 113.61223 * 270.84552 * 8 7 5 10 10 C 1.50698 * 113.61342 * 140.02323 * 8 7 5 11 11 C 1.37998 * 119.93559 * 120.00157 * 10 8 7 12 12 C 1.39373 * 119.87093 * 179.97438 * 11 10 8 13 13 C 1.48379 * 120.11789 * 179.97438 * 12 11 10 14 14 C 1.34569 * 122.76777 * 130.00337 * 13 12 11 15 15 C 1.50702 * 125.22918 * 359.97438 * 14 13 12 16 16 O 1.42894 * 109.46992 * 330.00549 * 15 14 13 17 17 Si 1.86302 * 109.46913 * 210.00035 * 15 14 13 18 18 S 1.75857 * 109.53971 * 179.97438 * 14 13 12 19 19 C 1.75811 * 91.14872 * 359.97438 * 18 14 13 20 20 C 1.33048 * 109.93415 * 359.73005 * 19 18 14 21 21 C 1.39334 * 119.76068 * 0.02562 * 12 11 10 22 22 C 1.38035 * 119.87460 * 359.97438 * 21 12 11 23 23 C 1.38310 * 120.12037 * 359.72823 * 22 21 12 24 24 C 1.53782 * 87.08260 * 25.39213 * 8 7 5 25 25 H 1.09002 * 113.61357 * 334.56600 * 7 5 1 26 26 H 1.09002 * 113.61608 * 203.74762 * 7 5 1 27 27 H 1.07998 * 120.06412 * 359.97438 * 11 10 8 28 28 H 1.09001 * 109.46604 * 90.00168 * 15 14 13 29 29 H 0.96708 * 113.99991 * 299.99473 * 16 15 14 30 30 H 1.48503 * 109.99423 * 180.02562 * 17 15 14 31 31 H 1.48495 * 110.00188 * 301.31912 * 17 15 14 32 32 H 1.08011 * 125.02963 * 180.02562 * 19 18 14 33 33 H 1.08003 * 122.53974 * 180.26804 * 20 19 18 34 34 H 1.07997 * 120.06366 * 179.97438 * 21 12 11 35 35 H 1.07997 * 119.93681 * 180.02562 * 22 21 12 36 36 H 1.07997 * 119.87467 * 180.27346 * 23 22 21 37 37 H 1.08997 * 113.61668 * 89.11298 * 24 8 7 38 38 H 1.08994 * 113.61387 * 220.02033 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3362 0.9513 0.0000 4 1 -0.3363 -0.4756 0.8239 5 6 -0.4897 -0.6925 -1.1993 6 1 -0.3269 -0.1230 -2.1143 7 6 -0.0309 -2.1571 -1.2955 8 6 -1.2963 -2.5259 -0.5033 9 1 -1.1539 -2.5142 0.5773 10 6 -1.9691 -3.7830 -0.9913 11 6 -2.1234 -4.8570 -0.1387 12 6 -2.7463 -6.0187 -0.5913 13 6 -2.9146 -7.1770 0.3207 14 6 -4.0925 -7.8050 0.4908 15 6 -5.3812 -7.4372 -0.1986 16 8 -5.3933 -6.0341 -0.4687 17 14 -6.8201 -7.8701 0.9029 18 16 -3.8970 -9.1207 1.6411 19 6 -2.1908 -8.7439 1.8358 20 6 -1.8640 -7.7090 1.0661 21 6 -3.2095 -6.0889 -1.9035 22 6 -3.0498 -5.0085 -2.7477 23 6 -2.4364 -3.8559 -2.2914 24 6 -1.9234 -1.2351 -1.0560 25 1 0.8954 -2.3607 -0.7582 26 1 -0.0241 -2.5466 -2.3135 27 1 -1.7622 -4.7974 0.8774 28 1 -5.4621 -7.9883 -1.1355 29 1 -5.3244 -5.4808 0.3214 30 1 -8.0969 -7.5129 0.2341 31 1 -6.8006 -9.3213 1.2171 32 1 -1.5078 -9.2769 2.4809 33 1 -0.8616 -7.3091 1.0252 34 1 -3.6925 -6.9868 -2.2595 35 1 -3.4088 -5.0616 -3.7649 36 1 -2.3175 -3.0113 -2.9540 37 1 -2.4346 -1.3712 -2.0090 38 1 -2.5248 -0.6943 -0.3253 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_273584_18081502_14315888.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:58:13 Heat of formation + Delta-G solvation = 171.785723 kcal Electronic energy + Delta-G solvation = -20663.442346 eV Core-core repulsion = 17683.737000 eV Total energy + Delta-G solvation = -2979.705346 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 289.100 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.11462 -41.73555 -39.90228 -38.22084 -37.94950 -33.38341 -33.17561 -31.84293 -29.08595 -28.09742 -27.79986 -25.14670 -24.49836 -23.97553 -22.45675 -21.75558 -21.40698 -20.73447 -19.60131 -19.31001 -18.86614 -18.28715 -17.86026 -17.47011 -17.06174 -16.84774 -16.46513 -16.00443 -15.93515 -15.77526 -15.58688 -15.13360 -14.84583 -14.62207 -14.57571 -14.34221 -14.18006 -13.95893 -13.62746 -13.27812 -13.24956 -13.05394 -12.79863 -12.29627 -11.67340 -10.95487 -10.68637 -10.36355 -9.97619 -5.82030 -1.20119 -1.11092 -0.67368 -0.52613 -0.28443 0.10603 0.46807 0.48517 0.67022 0.82760 0.85890 0.88310 1.24103 1.37075 1.49768 1.63488 1.69736 2.07007 2.22845 2.43594 2.51522 2.52918 2.58314 2.66221 2.80929 2.87168 2.92944 2.99338 3.11508 3.22764 3.38428 3.47663 3.57712 3.62491 3.71341 3.93677 3.98775 4.17339 4.34648 4.36552 4.50243 4.63010 4.74098 4.99417 5.62217 Molecular weight = 289.10amu Principal moments of inertia in cm(-1) A = 0.022398 B = 0.004817 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.798645 B = 5810.910144 C = 6304.266291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 H 0.438 0.562 3 H 0.439 0.561 4 H 0.433 0.567 5 C -0.019 4.019 6 H 0.156 0.844 7 C -0.134 4.134 8 C -0.076 4.076 9 H 0.104 0.896 10 C -0.096 4.096 11 C -0.099 4.099 12 C -0.008 4.008 13 C -0.055 4.055 14 C -0.210 4.210 15 C -0.027 4.027 16 O -0.525 6.525 17 Si 0.659 3.341 18 S 0.131 5.869 19 C -0.205 4.205 20 C -0.127 4.127 21 C -0.059 4.059 22 C -0.113 4.113 23 C -0.114 4.114 24 C -0.136 4.136 25 H 0.094 0.906 26 H 0.126 0.874 27 H 0.121 0.879 28 H 0.123 0.877 29 H 0.376 0.624 30 H -0.236 1.236 31 H -0.238 1.238 32 H 0.170 0.830 33 H 0.141 0.859 34 H 0.120 0.880 35 H 0.125 0.875 36 H 0.118 0.882 37 H 0.128 0.872 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.106 25.348 2.084 29.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.020 5.020 2 H 0.268 0.732 3 H 0.268 0.732 4 H 0.262 0.738 5 C -0.123 4.123 6 H 0.173 0.827 7 C -0.171 4.171 8 C -0.094 4.094 9 H 0.122 0.878 10 C -0.096 4.096 11 C -0.117 4.117 12 C -0.010 4.010 13 C -0.067 4.067 14 C -0.328 4.328 15 C -0.140 4.140 16 O -0.330 6.330 17 Si 0.559 3.441 18 S 0.396 5.604 19 C -0.340 4.340 20 C -0.157 4.157 21 C -0.077 4.077 22 C -0.131 4.131 23 C -0.132 4.132 24 C -0.173 4.173 25 H 0.112 0.888 26 H 0.144 0.856 27 H 0.139 0.861 28 H 0.140 0.860 29 H 0.223 0.777 30 H -0.159 1.159 31 H -0.162 1.162 32 H 0.187 0.813 33 H 0.158 0.842 34 H 0.138 0.862 35 H 0.143 0.857 36 H 0.136 0.864 37 H 0.146 0.854 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 12.247 23.379 1.978 26.467 hybrid contribution 1.542 0.816 -0.648 1.861 sum 13.788 24.195 1.330 27.880 Atomic orbital electron populations 1.42235 1.21128 1.20521 1.18077 0.73240 0.73162 0.73826 1.24492 1.01585 0.98388 0.87883 0.82678 1.23662 0.99203 0.88864 1.05420 1.21697 0.94606 0.93251 0.99848 0.87783 1.19017 1.01946 0.94308 0.94357 1.20933 0.99340 0.92302 0.99150 1.18256 0.97897 0.92123 0.92710 1.17586 0.91748 0.97802 0.99595 1.25195 0.99863 1.02388 1.05327 1.24399 0.99040 0.86095 1.04435 1.86560 1.96274 1.14118 1.36071 0.94844 0.78184 0.84778 0.86303 1.84766 1.05520 1.31002 1.39089 1.25665 0.99252 1.02922 1.06159 1.20068 0.99944 0.97663 0.97987 1.21156 0.95720 0.98538 0.92321 1.21079 0.98870 0.93094 1.00074 1.20874 0.99324 0.98109 0.94876 1.23738 0.92010 0.95574 1.06006 0.88760 0.85559 0.86134 0.86038 0.77666 1.15928 1.16225 0.81297 0.84154 0.86206 0.85720 0.86410 0.85395 0.88611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 23.19 4.51 -3.90 -0.02 23.17 16 2 H 0.44 -17.05 9.02 -39.29 -0.35 -17.40 16 3 H 0.44 -17.19 9.03 -39.29 -0.35 -17.54 16 4 H 0.43 -16.45 8.01 -39.29 -0.31 -16.77 16 5 C -0.02 0.60 4.97 -66.81 -0.33 0.27 16 6 H 0.16 -4.93 8.14 -51.93 -0.42 -5.35 16 7 C -0.13 3.59 7.34 -25.92 -0.19 3.40 16 8 C -0.08 1.85 3.63 -90.96 -0.33 1.52 16 9 H 0.10 -2.75 7.66 -51.93 -0.40 -3.15 16 10 C -0.10 1.72 5.28 -104.67 -0.55 1.16 16 11 C -0.10 1.49 9.28 -39.25 -0.36 1.12 16 12 C -0.01 0.09 4.31 -104.89 -0.45 -0.36 16 13 C -0.05 0.57 5.33 -106.60 -0.57 0.00 16 14 C -0.21 2.04 5.67 -35.61 -0.20 1.84 16 15 C -0.03 0.27 2.15 36.01 0.08 0.34 16 16 O -0.53 5.72 9.35 -35.23 -0.33 5.39 16 17 Si 0.66 -6.16 31.42 -169.99 -5.34 -11.50 16 18 S 0.13 -1.15 21.14 -107.50 -2.27 -3.42 16 19 C -0.20 2.02 11.19 28.93 0.32 2.34 16 20 C -0.13 1.34 9.84 -40.96 -0.40 0.93 16 21 C -0.06 0.64 7.35 -39.25 -0.29 0.35 16 22 C -0.11 1.42 10.03 -39.63 -0.40 1.02 16 23 C -0.11 1.81 8.62 -39.52 -0.34 1.47 16 24 C -0.14 3.66 7.12 -25.82 -0.18 3.47 16 25 H 0.09 -2.61 8.14 -51.93 -0.42 -3.03 16 26 H 0.13 -3.04 7.73 -51.93 -0.40 -3.44 16 27 H 0.12 -1.98 8.05 -52.49 -0.42 -2.40 16 28 H 0.12 -1.16 7.79 -51.93 -0.40 -1.57 16 29 H 0.38 -5.20 8.68 45.56 0.40 -4.80 16 30 H -0.24 1.45 7.11 56.52 0.40 1.85 16 31 H -0.24 1.58 7.11 56.52 0.40 1.98 16 32 H 0.17 -1.91 8.06 -52.48 -0.42 -2.34 16 33 H 0.14 -1.72 8.06 -52.48 -0.42 -2.14 16 34 H 0.12 -1.16 7.41 -52.49 -0.39 -1.54 16 35 H 0.12 -1.59 8.06 -52.49 -0.42 -2.01 16 36 H 0.12 -2.18 6.64 -52.49 -0.35 -2.53 16 37 H 0.13 -3.12 6.30 -51.93 -0.33 -3.45 16 38 H 0.10 -2.66 8.14 -51.93 -0.42 -3.08 16 LS Contribution 317.66 15.07 4.79 4.79 Total: 1.00 -38.97 317.66 -12.43 -51.40 By element: Atomic # 1 Polarization: -83.66 SS G_CDS: -5.05 Total: -88.71 kcal Atomic # 6 Polarization: 23.09 SS G_CDS: -4.20 Total: 18.89 kcal Atomic # 7 Polarization: 23.19 SS G_CDS: -0.02 Total: 23.17 kcal Atomic # 8 Polarization: 5.72 SS G_CDS: -0.33 Total: 5.39 kcal Atomic # 14 Polarization: -6.16 SS G_CDS: -5.34 Total: -11.50 kcal Atomic # 16 Polarization: -1.15 SS G_CDS: -2.27 Total: -3.42 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -38.97 -12.43 -51.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081502_14315888.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 223.184 kcal (2) G-P(sol) polarization free energy of solvation -38.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 184.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 171.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds