Wall clock time and date at job start Tue Mar 9 2021 12:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00898 * 1 3 3 H 1.00894 * 109.47888 * 1 2 4 4 H 1.00901 * 109.46776 * 239.99945 * 1 2 3 5 5 C 1.46899 * 109.47159 * 120.00506 * 1 2 3 6 6 H 1.09002 * 109.46776 * 300.00033 * 5 1 2 7 7 C 1.53002 * 109.47000 * 59.99399 * 5 1 2 8 8 C 1.52997 * 109.46978 * 179.97438 * 7 5 1 9 9 C 1.53002 * 109.47415 * 300.00098 * 8 7 5 10 10 H 1.09002 * 109.47070 * 300.00053 * 9 8 7 11 11 N 1.46505 * 109.47411 * 179.97438 * 9 8 7 12 12 C 1.34769 * 119.99798 * 155.00053 * 11 9 8 13 13 O 1.21564 * 120.00527 * 0.02562 * 12 11 9 14 14 C 1.47712 * 119.99697 * 180.02562 * 12 11 9 15 15 C 1.40155 * 120.46241 * 179.72826 * 14 12 11 16 16 C 1.38083 * 118.38495 * 179.73246 * 15 14 12 17 17 C 1.39463 * 119.21820 * 0.51415 * 16 15 14 18 18 C 1.48226 * 119.57469 * 179.76930 * 17 16 15 19 19 C 1.39386 * 120.54260 * 4.97574 * 18 17 16 20 20 N 1.31724 * 120.58633 * 179.97438 * 19 18 17 21 21 C 1.31908 * 121.85838 * 359.97438 * 20 19 18 22 22 C 1.38326 * 121.04963 * 359.97438 * 21 20 19 23 23 C 1.50699 * 120.35673 * 180.02562 * 22 21 20 24 24 O 1.42894 * 109.47354 * 119.99802 * 23 22 21 25 25 Si 1.86303 * 109.46985 * 0.02562 * 23 22 21 26 26 C 1.38394 * 119.29252 * 359.78620 * 22 21 20 27 27 N 1.32809 * 120.85769 * 359.74361 * 17 16 15 28 28 C 1.31484 * 121.76663 * 0.02562 * 27 17 16 29 29 C 1.52997 * 109.46817 * 59.99873 * 9 8 7 30 30 C 1.52992 * 109.47482 * 300.00014 * 29 9 8 31 31 H 1.09002 * 109.47097 * 60.00187 * 7 5 1 32 32 H 1.08998 * 109.47844 * 300.00402 * 7 5 1 33 33 H 1.09000 * 109.47140 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.47497 * 60.00450 * 8 7 5 35 35 H 0.97005 * 119.99239 * 335.00029 * 11 9 8 36 36 H 1.07999 * 120.80223 * 359.97438 * 15 14 12 37 37 H 1.08001 * 120.38889 * 180.25858 * 16 15 14 38 38 H 1.08004 * 119.70676 * 359.95818 * 19 18 17 39 39 H 1.08003 * 119.46774 * 180.02562 * 21 20 19 40 40 H 1.08999 * 109.47321 * 240.00545 * 23 22 21 41 41 H 0.96704 * 114.00180 * 180.02562 * 24 23 22 42 42 H 1.48498 * 109.99975 * 59.99737 * 25 23 22 43 43 H 1.48500 * 110.00192 * 181.31927 * 25 23 22 44 44 H 1.07994 * 120.85168 * 180.23762 * 26 22 21 45 45 H 1.07997 * 119.65398 * 179.97438 * 28 27 17 46 46 H 1.09002 * 109.47153 * 60.00231 * 29 9 8 47 47 H 1.08998 * 109.47533 * 179.97438 * 29 9 8 48 48 H 1.09002 * 109.47103 * 300.00247 * 30 29 9 49 49 H 1.08996 * 109.47747 * 179.97438 * 30 29 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3364 0.9512 0.0000 4 1 -0.3363 -0.4757 0.8239 5 6 -0.4897 -0.6926 -1.1994 6 1 -0.1263 -0.1788 -2.0894 7 6 0.0205 -2.1351 -1.1993 8 6 -0.4901 -2.8566 -2.4481 9 6 -2.0201 -2.8567 -2.4475 10 1 -2.3830 -3.3704 -1.5572 11 7 -2.5089 -3.5471 -3.6436 12 6 -3.7308 -4.1157 -3.6413 13 8 -4.4276 -4.0554 -2.6470 14 6 -4.2235 -4.8122 -4.8472 15 6 -5.4903 -5.4118 -4.8537 16 6 -5.9101 -6.0467 -6.0057 17 6 -5.0622 -6.0796 -7.1125 18 6 -5.5028 -6.7635 -8.3516 19 6 -6.7926 -7.2819 -8.4542 20 7 -7.1853 -7.8893 -9.5551 21 6 -6.3860 -8.0313 -10.5949 22 6 -5.0919 -7.5435 -10.5718 23 6 -4.1923 -7.7138 -11.7688 24 8 -3.7893 -6.4296 -12.2485 25 14 -5.1123 -8.6175 -13.1134 26 6 -4.6335 -6.8929 -9.4396 27 7 -3.8652 -5.5057 -7.0710 28 6 -3.4309 -4.8877 -5.9947 29 6 -2.5301 -1.4143 -2.4475 30 6 -2.0197 -0.6927 -1.1987 31 1 -0.3428 -2.6489 -0.3092 32 1 1.1104 -2.1351 -1.1993 33 1 -0.1270 -3.8844 -2.4479 34 1 -0.1272 -2.3430 -3.3384 35 1 -1.9531 -3.5949 -4.4371 36 1 -6.1242 -5.3747 -3.9801 37 1 -6.8820 -6.5159 -6.0478 38 1 -7.4761 -7.1849 -7.6236 39 1 -6.7483 -8.5357 -11.4785 40 1 -3.3110 -8.2877 -11.4823 41 1 -3.2075 -6.4627 -13.0202 42 1 -6.3160 -7.8449 -13.5128 43 1 -4.2260 -8.8200 -14.2876 44 1 -3.6290 -6.4988 -9.3957 45 1 -2.4513 -4.4331 -5.9984 46 1 -2.1672 -0.9006 -3.3378 47 1 -3.6201 -1.4142 -2.4475 48 1 -2.3826 -1.2064 -0.3084 49 1 -2.3827 0.3350 -1.1989 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081518_17119696.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:59:16 Heat of formation + Delta-G solvation = 83.747187 kcal Electronic energy + Delta-G solvation = -30338.390534 eV Core-core repulsion = 26155.916382 eV Total energy + Delta-G solvation = -4182.474152 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.176 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -42.12327 -41.52502 -40.92453 -39.99055 -38.03114 -37.42243 -35.02220 -34.34108 -33.92635 -33.52615 -32.01174 -31.35115 -29.22612 -27.40940 -26.29804 -25.25916 -24.19991 -23.84514 -23.33847 -22.57577 -21.69195 -21.44930 -19.40091 -18.71085 -18.62389 -18.44597 -18.29738 -18.14931 -17.78258 -17.47215 -17.34313 -16.67563 -16.32974 -16.09422 -15.93692 -15.61914 -15.42230 -15.23690 -15.13608 -14.87341 -14.56501 -14.38334 -14.21263 -14.12281 -14.04486 -13.75576 -13.68113 -13.62362 -13.36977 -12.90592 -12.54682 -12.48860 -12.25909 -12.13694 -11.69198 -11.55283 -11.51439 -11.39422 -11.11739 -10.85598 -10.74332 -10.66521 -10.37657 -10.24447 -9.61673 -4.98258 -1.06526 -0.03118 0.05081 0.23021 1.20793 1.54599 1.56566 1.64208 1.90216 1.96036 2.42349 2.72752 2.81084 3.08460 3.10177 3.24944 3.32829 3.42729 3.48447 3.60372 3.62399 3.64527 3.71328 3.74753 3.79890 3.89208 3.93286 3.96353 3.98496 4.11000 4.18721 4.22345 4.33314 4.35937 4.43378 4.48099 4.56264 4.58868 4.63175 4.71069 4.77809 4.81350 4.89901 4.97788 4.98256 5.00350 5.05988 5.08254 5.19426 5.23146 5.30192 5.42296 5.43805 6.29831 6.51072 6.60800 6.72361 6.99353 Molecular weight = 356.18amu Principal moments of inertia in cm(-1) A = 0.020788 B = 0.001801 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.632911 B =15547.422050 C =16561.896930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 H 0.451 0.549 3 H 0.450 0.550 4 H 0.442 0.558 5 C 0.053 3.947 6 H 0.158 0.842 7 C -0.138 4.138 8 C -0.126 4.126 9 C 0.133 3.867 10 H 0.072 0.928 11 N -0.712 5.712 12 C 0.570 3.430 13 O -0.570 6.570 14 C -0.203 4.203 15 C -0.018 4.018 16 C -0.166 4.166 17 C 0.188 3.812 18 C -0.119 4.119 19 C 0.125 3.875 20 N -0.497 5.497 21 C 0.109 3.891 22 C -0.137 4.137 23 C -0.073 4.073 24 O -0.556 6.556 25 Si 0.752 3.248 26 C -0.013 4.013 27 N -0.500 5.500 28 C 0.150 3.850 29 C -0.133 4.133 30 C -0.138 4.138 31 H 0.091 0.909 32 H 0.118 0.882 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.414 0.586 36 H 0.154 0.846 37 H 0.168 0.832 38 H 0.188 0.812 39 H 0.172 0.828 40 H 0.106 0.894 41 H 0.399 0.601 42 H -0.298 1.298 43 H -0.280 1.280 44 H 0.150 0.850 45 H 0.195 0.805 46 H 0.084 0.916 47 H 0.041 0.959 48 H 0.088 0.912 49 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.715 22.543 29.115 43.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.020 5.020 2 H 0.283 0.717 3 H 0.281 0.719 4 H 0.272 0.728 5 C -0.053 4.053 6 H 0.176 0.824 7 C -0.176 4.176 8 C -0.164 4.164 9 C 0.029 3.971 10 H 0.090 0.910 11 N -0.363 5.363 12 C 0.357 3.643 13 O -0.450 6.450 14 C -0.208 4.208 15 C -0.044 4.044 16 C -0.185 4.185 17 C 0.053 3.947 18 C -0.121 4.121 19 C -0.033 4.033 20 N -0.205 5.205 21 C -0.046 4.046 22 C -0.140 4.140 23 C -0.182 4.182 24 O -0.367 6.367 25 Si 0.657 3.343 26 C -0.039 4.039 27 N -0.208 5.208 28 C -0.011 4.011 29 C -0.172 4.172 30 C -0.177 4.177 31 H 0.110 0.890 32 H 0.136 0.864 33 H 0.092 0.908 34 H 0.113 0.887 35 H 0.252 0.748 36 H 0.172 0.828 37 H 0.185 0.815 38 H 0.205 0.795 39 H 0.188 0.812 40 H 0.124 0.876 41 H 0.250 0.750 42 H -0.226 1.226 43 H -0.207 1.207 44 H 0.168 0.832 45 H 0.212 0.788 46 H 0.103 0.897 47 H 0.060 0.940 48 H 0.106 0.894 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 22.196 22.316 28.496 42.458 hybrid contribution 0.758 0.906 -0.263 1.210 sum 22.954 23.222 28.233 43.165 Atomic orbital electron populations 1.42244 1.22131 1.20917 1.16727 0.71668 0.71874 0.72780 1.22863 0.95919 0.96187 0.90298 0.82437 1.21982 1.03940 0.92512 0.99163 1.21756 0.91098 1.02932 1.00663 1.21343 0.95657 0.92642 0.87442 0.91001 1.45907 1.16424 1.55723 1.18289 1.17992 0.82143 0.77905 0.86303 1.90801 1.57511 1.61241 1.35408 1.21125 0.97804 1.05294 0.96626 1.21857 0.94263 0.90112 0.98140 1.22306 1.02393 1.01394 0.92412 1.19780 0.89998 0.92695 0.92241 1.19671 0.96050 1.02451 0.93974 1.23424 0.93185 0.90811 0.95916 1.67796 1.36521 1.15422 1.00733 1.23008 0.89239 0.95352 0.97050 1.20477 0.95839 1.01427 0.96209 1.24760 1.02845 0.90226 1.00393 1.86523 1.70942 1.27568 1.51640 0.94251 0.77066 0.86157 0.76855 1.21706 1.00450 0.91571 0.90147 1.67606 1.14778 1.09752 1.28702 1.23344 0.99557 0.92188 0.86001 1.21850 1.00663 0.94650 1.00065 1.21941 0.92994 1.03718 0.99000 0.89030 0.86387 0.90847 0.88706 0.74794 0.82810 0.81468 0.79507 0.81186 0.87623 0.75002 1.22567 1.20692 0.83215 0.78820 0.89690 0.93965 0.89363 0.87599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 47.84 4.15 -168.67 -0.70 47.14 16 2 H 0.45 -36.76 8.96 -89.70 -0.80 -37.56 16 3 H 0.45 -36.20 8.96 -89.70 -0.80 -37.00 16 4 H 0.44 -34.84 8.90 -89.69 -0.80 -35.64 16 5 C 0.05 -3.45 3.03 44.92 0.14 -3.32 16 6 H 0.16 -10.51 8.14 -2.39 -0.02 -10.52 16 7 C -0.14 7.89 5.43 30.59 0.17 8.06 16 8 C -0.13 5.80 5.39 30.59 0.16 5.96 16 9 C 0.13 -4.94 2.45 44.99 0.11 -4.83 16 10 H 0.07 -2.29 7.58 -2.39 -0.02 -2.31 16 11 N -0.71 21.65 5.03 -445.54 -2.24 19.41 16 12 C 0.57 -11.45 7.74 86.75 0.67 -10.78 16 13 O -0.57 7.01 16.07 -3.92 -0.06 6.94 16 14 C -0.20 3.76 5.89 -19.96 -0.12 3.64 16 15 C -0.02 0.29 9.70 22.70 0.22 0.51 16 16 C -0.17 2.67 9.45 22.53 0.21 2.88 16 17 C 0.19 -2.37 6.73 41.95 0.28 -2.09 16 18 C -0.12 1.24 5.89 -19.95 -0.12 1.12 16 19 C 0.13 -1.33 10.58 84.99 0.90 -0.43 16 20 N -0.50 3.27 10.35 -194.87 -2.02 1.25 16 21 C 0.11 -0.92 9.84 84.70 0.83 -0.08 16 22 C -0.14 1.31 5.43 -19.81 -0.11 1.20 16 23 C -0.07 0.95 2.83 71.24 0.20 1.15 16 24 O -0.56 5.88 12.75 -148.98 -1.90 3.98 16 25 Si 0.75 -9.74 29.82 68.60 2.05 -7.69 16 26 C -0.01 0.12 9.28 22.70 0.21 0.33 16 27 N -0.50 6.82 9.49 -183.83 -1.74 5.07 16 28 C 0.15 -3.00 10.71 85.09 0.91 -2.09 16 29 C -0.13 5.37 5.49 30.59 0.17 5.54 16 30 C -0.14 7.43 5.43 30.59 0.17 7.59 16 31 H 0.09 -5.15 8.14 -2.39 -0.02 -5.17 16 32 H 0.12 -7.14 8.14 -2.39 -0.02 -7.16 16 33 H 0.07 -3.02 8.14 -2.39 -0.02 -3.04 16 34 H 0.09 -4.54 8.14 -2.39 -0.02 -4.56 16 35 H 0.41 -14.62 6.65 -92.70 -0.62 -15.24 16 36 H 0.15 -2.61 7.73 -2.91 -0.02 -2.63 16 37 H 0.17 -3.47 6.23 -2.91 -0.02 -3.49 16 38 H 0.19 -3.20 6.22 -2.91 -0.02 -3.22 16 39 H 0.17 -2.04 4.88 -2.91 -0.01 -2.05 16 40 H 0.11 -1.87 7.96 -2.39 -0.02 -1.89 16 41 H 0.40 -7.35 8.74 -74.05 -0.65 -8.00 16 42 H -0.30 1.49 7.11 99.48 0.71 2.19 16 43 H -0.28 2.45 7.11 99.48 0.71 3.15 16 44 H 0.15 -1.52 7.63 -2.91 -0.02 -1.54 16 45 H 0.20 -5.67 6.41 -2.91 -0.02 -5.69 16 46 H 0.08 -3.54 8.14 -2.39 -0.02 -3.56 16 47 H 0.04 -1.25 8.14 -2.39 -0.02 -1.27 16 48 H 0.09 -4.63 8.14 -2.39 -0.02 -4.65 16 49 H 0.11 -5.88 8.14 -2.39 -0.02 -5.90 16 Total: 1.00 -102.09 393.29 -4.19 -106.28 By element: Atomic # 1 Polarization: -194.16 SS G_CDS: -2.58 Total: -196.74 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: 5.01 Total: 14.36 kcal Atomic # 7 Polarization: 79.58 SS G_CDS: -6.70 Total: 72.87 kcal Atomic # 8 Polarization: 12.89 SS G_CDS: -1.96 Total: 10.93 kcal Atomic # 14 Polarization: -9.74 SS G_CDS: 2.05 Total: -7.69 kcal Total: -102.09 -4.19 -106.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081518_17119696.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.025 kcal (2) G-P(sol) polarization free energy of solvation -102.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -106.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds