Wall clock time and date at job start Tue Mar 9 2021 12:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00910 * 1 3 3 H 1.00900 * 109.46739 * 1 2 4 4 H 1.00894 * 109.47065 * 239.99280 * 1 2 3 5 5 C 1.46899 * 109.46844 * 119.99192 * 1 2 3 6 6 H 1.09005 * 112.85015 * 288.80345 * 5 1 2 7 7 C 1.53776 * 113.61784 * 60.00396 * 5 1 2 8 8 C 1.53780 * 87.08103 * 89.19564 * 7 5 1 9 9 H 1.08995 * 113.61874 * 270.80120 * 8 7 5 10 10 C 1.50704 * 113.61430 * 139.98268 * 8 7 5 11 11 C 1.37988 * 119.93994 * 119.99937 * 10 8 7 12 12 C 1.39365 * 119.87748 * 179.97438 * 11 10 8 13 13 C 1.48391 * 120.11833 * 180.02562 * 12 11 10 14 14 C 1.39300 * 120.53754 * 359.72554 * 13 12 11 15 15 N 1.31749 * 120.59215 * 179.72385 * 14 13 12 16 16 C 1.31883 * 121.85569 * 0.54241 * 15 14 13 17 17 C 1.50703 * 119.48854 * 179.72611 * 16 15 14 18 18 O 1.42896 * 109.47271 * 210.02169 * 17 16 15 19 19 Si 1.86307 * 109.46870 * 330.02101 * 17 16 15 20 20 C 1.38310 * 121.02926 * 359.74375 * 16 15 14 21 21 C 1.38419 * 119.28116 * 359.97438 * 20 16 15 22 22 C 1.39309 * 119.75768 * 0.02562 * 12 11 10 23 23 C 1.38037 * 119.87852 * 359.97438 * 22 12 11 24 24 C 1.38294 * 120.12159 * 0.02562 * 23 22 12 25 25 C 1.53780 * 113.68883 * 157.54275 * 5 1 2 26 26 H 1.08998 * 113.61395 * 334.65202 * 7 5 1 27 27 H 1.09003 * 113.62026 * 203.74789 * 7 5 1 28 28 H 1.08001 * 120.06335 * 0.25916 * 11 10 8 29 29 H 1.07997 * 119.70523 * 359.97438 * 14 13 12 30 30 H 1.09000 * 109.47464 * 90.01934 * 17 16 15 31 31 H 0.96700 * 113.99942 * 180.02562 * 18 17 16 32 32 H 1.48500 * 109.99481 * 178.68132 * 19 17 16 33 33 H 1.48494 * 109.99644 * 299.99803 * 19 17 16 34 34 H 1.07998 * 120.36350 * 179.97438 * 20 16 15 35 35 H 1.08001 * 120.84493 * 179.97438 * 21 20 16 36 36 H 1.08001 * 120.06280 * 179.97438 * 22 12 11 37 37 H 1.08002 * 119.94059 * 180.02562 * 23 22 12 38 38 H 1.08005 * 119.88123 * 180.02562 * 24 23 22 39 39 H 1.08999 * 113.61417 * 156.32691 * 25 5 1 40 40 H 1.08994 * 113.61843 * 25.41535 * 25 5 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0091 0.0000 0.0000 3 1 -0.3363 0.9513 0.0000 4 1 -0.3363 -0.4757 0.8237 5 6 -0.4896 -0.6923 -1.1995 6 1 -0.3254 -0.1222 -2.1140 7 6 -0.0308 -2.1569 -1.2960 8 6 -1.2974 -2.5235 -0.5048 9 1 -1.1558 -2.5123 0.5759 10 6 -1.9721 -3.7794 -0.9935 11 6 -2.1289 -4.8533 -0.1413 12 6 -2.7535 -6.0138 -0.5944 13 6 -2.9254 -7.1716 0.3176 14 6 -2.4614 -7.1140 1.6298 15 7 -2.6183 -8.1393 2.4421 16 6 -3.2042 -9.2541 2.0507 17 6 -3.3500 -10.3964 3.0229 18 8 -3.3312 -11.6344 2.3095 19 14 -1.9401 -10.3595 4.2402 20 6 -3.6866 -9.3914 0.7618 21 6 -3.5506 -8.3396 -0.1276 22 6 -3.2158 -6.0828 -1.9068 23 6 -3.0537 -5.0026 -2.7507 24 6 -2.4332 -3.8535 -2.2958 25 6 -1.9225 -1.2326 -1.0595 26 1 0.8946 -2.3609 -0.7575 27 1 -0.0239 -2.5463 -2.3141 28 1 -1.7724 -4.7929 0.8764 29 1 -1.9722 -6.2193 1.9856 30 1 -4.2946 -10.2997 3.5581 31 1 -3.4212 -12.4147 2.8735 32 1 -2.0895 -11.4620 5.2238 33 1 -0.6464 -10.4905 3.5230 34 1 -4.1643 -10.3094 0.4526 35 1 -3.9178 -8.4196 -1.1402 36 1 -3.7002 -6.9799 -2.2632 37 1 -3.4121 -5.0549 -3.7682 38 1 -2.3087 -3.0104 -2.9593 39 1 -2.4328 -1.3693 -2.0129 40 1 -2.5243 -0.6905 -0.3301 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273584_18081524_14315888.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:59:20 Heat of formation + Delta-G solvation = 141.925621 kcal Electronic energy + Delta-G solvation = -21275.192355 eV Core-core repulsion = 18139.614021 eV Total energy + Delta-G solvation = -3135.578335 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 284.139 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.98620 -41.48918 -39.73059 -37.96931 -36.02275 -34.35052 -33.26221 -31.88873 -30.81120 -27.35791 -26.89048 -26.35228 -24.99077 -23.75984 -22.76485 -22.03052 -20.24911 -19.19873 -18.74036 -18.47973 -18.36001 -17.43878 -17.14187 -16.85835 -16.74359 -16.30346 -15.84487 -15.57945 -15.14224 -14.97180 -14.75719 -14.65433 -14.30411 -14.17806 -13.98607 -13.56470 -13.35770 -13.08495 -12.83064 -12.75130 -12.41071 -12.08810 -11.80649 -11.70150 -11.38882 -11.28155 -10.87494 -10.66059 -10.34780 -9.72140 -9.09103 -4.84189 -0.58029 0.14600 0.37729 0.70946 1.28969 1.59953 1.61973 1.90001 2.47093 2.71839 2.85536 2.99200 3.12414 3.37939 3.52274 3.62843 3.63816 3.74849 3.81547 3.82979 3.95947 4.03870 4.10047 4.16711 4.20032 4.27178 4.37511 4.44306 4.51267 4.61178 4.62439 4.68656 4.73731 4.84265 4.89791 4.95741 4.97920 5.02431 5.05626 5.11599 5.25389 5.44881 5.56147 5.59613 5.61103 6.00095 6.47114 6.75994 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.025180 B = 0.003670 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.735100 B = 7627.995988 C = 8556.358938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 H 0.452 0.548 3 H 0.453 0.547 4 H 0.441 0.559 5 C 0.030 3.970 6 H 0.166 0.834 7 C -0.142 4.142 8 C -0.093 4.093 9 H 0.138 0.862 10 C -0.073 4.073 11 C -0.108 4.108 12 C -0.058 4.058 13 C -0.102 4.102 14 C 0.114 3.886 15 N -0.482 5.482 16 C 0.116 3.884 17 C -0.080 4.080 18 O -0.558 6.558 19 Si 0.791 3.209 20 C -0.155 4.155 21 C -0.078 4.078 22 C -0.132 4.132 23 C -0.131 4.131 24 C -0.113 4.113 25 C -0.145 4.145 26 H 0.109 0.891 27 H 0.097 0.903 28 H 0.151 0.849 29 H 0.198 0.802 30 H 0.106 0.894 31 H 0.402 0.598 32 H -0.284 1.284 33 H -0.316 1.316 34 H 0.138 0.862 35 H 0.148 0.852 36 H 0.116 0.884 37 H 0.128 0.872 38 H 0.150 0.850 39 H 0.102 0.898 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.054 33.578 -2.321 35.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.010 5.010 2 H 0.284 0.716 3 H 0.285 0.715 4 H 0.272 0.728 5 C -0.076 4.076 6 H 0.183 0.817 7 C -0.179 4.179 8 C -0.111 4.111 9 H 0.156 0.844 10 C -0.073 4.073 11 C -0.126 4.126 12 C -0.058 4.058 13 C -0.104 4.104 14 C -0.043 4.043 15 N -0.193 5.193 16 C -0.020 4.020 17 C -0.189 4.189 18 O -0.368 6.368 19 Si 0.696 3.304 20 C -0.175 4.175 21 C -0.104 4.104 22 C -0.150 4.150 23 C -0.149 4.149 24 C -0.131 4.131 25 C -0.182 4.182 26 H 0.128 0.872 27 H 0.116 0.884 28 H 0.169 0.831 29 H 0.215 0.785 30 H 0.123 0.877 31 H 0.254 0.746 32 H -0.212 1.212 33 H -0.244 1.244 34 H 0.156 0.844 35 H 0.166 0.834 36 H 0.134 0.866 37 H 0.146 0.854 38 H 0.168 0.832 39 H 0.121 0.879 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 10.990 33.452 -1.856 35.260 hybrid contribution -1.141 -2.298 -1.370 2.908 sum 9.848 31.154 -3.226 32.833 Atomic orbital electron populations 1.41972 1.22080 1.20892 1.16057 0.71627 0.71451 0.72846 1.23676 0.97159 0.96270 0.90521 0.81655 1.23553 0.98508 0.92445 1.03443 1.22121 0.96008 0.90636 1.02297 0.84430 1.19810 0.98546 0.96023 0.92967 1.21430 0.98247 0.91735 1.01150 1.18688 1.00687 0.93527 0.92927 1.20004 1.00094 0.94599 0.95693 1.23340 0.95477 0.96963 0.88566 1.66773 1.14659 1.00427 1.37402 1.20649 0.94893 0.92970 0.93476 1.24717 1.11822 0.83317 0.99084 1.86424 1.96353 1.15800 1.38272 0.93072 0.72924 0.86704 0.77671 1.21914 1.01133 1.00333 0.94134 1.21972 0.95744 0.92120 1.00541 1.21419 1.00283 0.99676 0.93635 1.21351 0.99559 0.93873 1.00136 1.21401 0.97481 0.97895 0.96321 1.23615 0.94944 0.94716 1.04928 0.87237 0.88416 0.83129 0.78508 0.87657 0.74620 1.21174 1.24416 0.84432 0.83417 0.86636 0.85426 0.83221 0.87929 0.87128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.61 47.26 4.51 -166.50 -0.75 46.51 16 2 H 0.45 -36.64 9.02 -89.69 -0.81 -37.45 16 3 H 0.45 -37.01 9.03 -89.69 -0.81 -37.82 16 4 H 0.44 -35.14 8.01 -89.70 -0.72 -35.86 16 5 C 0.03 -1.98 4.95 45.44 0.23 -1.75 16 6 H 0.17 -11.04 8.14 -2.38 -0.02 -11.06 16 7 C -0.14 7.88 7.34 31.12 0.23 8.11 16 8 C -0.09 4.73 3.63 -11.01 -0.04 4.69 16 9 H 0.14 -7.84 7.65 -2.39 -0.02 -7.85 16 10 C -0.07 2.66 5.28 -19.90 -0.11 2.56 16 11 C -0.11 3.25 9.10 22.48 0.20 3.46 16 12 C -0.06 1.24 5.88 -20.04 -0.12 1.13 16 13 C -0.10 1.74 5.89 -19.95 -0.12 1.62 16 14 C 0.11 -2.07 10.60 84.96 0.90 -1.17 16 15 N -0.48 6.03 8.35 -183.02 -1.53 4.50 16 16 C 0.12 -1.13 6.11 42.57 0.26 -0.87 16 17 C -0.08 0.94 2.98 71.24 0.21 1.15 16 18 O -0.56 5.70 11.82 -148.98 -1.76 3.94 16 19 Si 0.79 -9.01 31.88 68.60 2.19 -6.83 16 20 C -0.16 1.56 9.37 22.33 0.21 1.77 16 21 C -0.08 1.07 9.54 22.68 0.22 1.29 16 22 C -0.13 2.68 9.44 22.48 0.21 2.90 16 23 C -0.13 3.20 10.03 22.24 0.22 3.42 16 24 C -0.11 3.64 8.60 22.31 0.19 3.83 16 25 C -0.14 8.09 7.12 31.12 0.22 8.31 16 26 H 0.11 -6.34 8.14 -2.39 -0.02 -6.36 16 27 H 0.10 -4.76 7.72 -2.39 -0.02 -4.78 16 28 H 0.15 -5.40 6.23 -2.91 -0.02 -5.41 16 29 H 0.20 -5.42 6.23 -2.91 -0.02 -5.44 16 30 H 0.11 -1.65 7.96 -2.39 -0.02 -1.67 16 31 H 0.40 -7.19 8.74 -74.06 -0.65 -7.83 16 32 H -0.28 2.27 7.11 99.48 0.71 2.98 16 33 H -0.32 0.78 7.11 99.48 0.71 1.49 16 34 H 0.14 -1.34 7.47 -2.91 -0.02 -1.36 16 35 H 0.15 -2.50 6.33 -2.91 -0.02 -2.51 16 36 H 0.12 -2.24 6.28 -2.91 -0.02 -2.26 16 37 H 0.13 -3.22 8.06 -2.91 -0.02 -3.24 16 38 H 0.15 -5.73 6.65 -2.91 -0.02 -5.75 16 39 H 0.10 -5.13 6.30 -2.39 -0.02 -5.15 16 40 H 0.11 -6.45 8.14 -2.39 -0.02 -6.47 16 Total: 1.00 -94.50 322.73 -0.77 -95.26 By element: Atomic # 1 Polarization: -181.99 SS G_CDS: -1.84 Total: -183.82 kcal Atomic # 6 Polarization: 37.51 SS G_CDS: 2.92 Total: 40.43 kcal Atomic # 7 Polarization: 53.29 SS G_CDS: -2.28 Total: 51.01 kcal Atomic # 8 Polarization: 5.70 SS G_CDS: -1.76 Total: 3.94 kcal Atomic # 14 Polarization: -9.01 SS G_CDS: 2.19 Total: -6.83 kcal Total: -94.50 -0.77 -95.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081524_14315888.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 237.187 kcal (2) G-P(sol) polarization free energy of solvation -94.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds