Wall clock time and date at job start Tue Mar 9 2021 13:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00900 * 1 3 3 H 1.00898 * 109.47935 * 1 2 4 4 H 1.00901 * 109.47089 * 239.99796 * 1 2 3 5 5 C 1.46902 * 109.46895 * 120.00400 * 1 2 3 6 6 H 1.09005 * 109.47325 * 180.02562 * 5 1 2 7 7 C 1.52999 * 109.47005 * 299.99402 * 5 1 2 8 8 C 1.53000 * 109.47062 * 60.00055 * 7 5 1 9 9 C 1.53006 * 109.47134 * 59.99953 * 8 7 5 10 10 H 1.08996 * 109.47061 * 60.00045 * 9 8 7 11 11 C 1.50698 * 109.47142 * 180.02562 * 9 8 7 12 12 C 1.35371 * 126.73287 * 35.28604 * 11 9 8 13 13 N 1.36123 * 106.04756 * 180.11811 * 12 11 9 14 14 C 1.40250 * 125.93947 * 179.88428 * 13 12 11 15 15 C 1.38813 * 120.06270 * 179.70808 * 14 13 12 16 16 C 1.38125 * 119.93542 * 180.02562 * 15 14 13 17 17 C 1.38282 * 120.06295 * 359.97438 * 16 15 14 18 18 C 1.50701 * 119.93426 * 179.97438 * 17 16 15 19 19 O 1.42904 * 109.47094 * 299.99925 * 18 17 16 20 20 Si 1.86307 * 109.46865 * 180.02562 * 18 17 16 21 21 C 1.38276 * 120.12882 * 0.02562 * 17 16 15 22 22 C 1.38125 * 120.06543 * 359.97438 * 21 17 16 23 23 N 1.28727 * 108.11380 * 359.61501 * 13 12 11 24 24 N 1.28603 * 110.23853 * 0.24640 * 23 13 12 25 25 C 1.53001 * 109.46822 * 299.99984 * 9 8 7 26 26 C 1.52993 * 109.47315 * 59.99409 * 5 1 2 27 27 H 1.08996 * 109.47181 * 180.02562 * 7 5 1 28 28 H 1.09002 * 109.47373 * 300.00534 * 7 5 1 29 29 H 1.08996 * 109.47110 * 300.00027 * 8 7 5 30 30 H 1.09004 * 109.47392 * 180.02562 * 8 7 5 31 31 H 1.07990 * 126.97455 * 359.97112 * 12 11 9 32 32 H 1.08005 * 120.03638 * 0.02562 * 15 14 13 33 33 H 1.07997 * 119.97122 * 179.72282 * 16 15 14 34 34 H 1.08997 * 109.47308 * 60.00366 * 18 17 16 35 35 H 0.96705 * 114.00014 * 300.00348 * 19 18 17 36 36 H 1.48495 * 109.99541 * 179.97438 * 20 18 17 37 37 H 1.48493 * 109.99956 * 301.31778 * 20 18 17 38 38 H 1.08006 * 119.96626 * 180.02562 * 21 17 16 39 39 H 1.07998 * 120.02930 * 180.02562 * 22 21 17 40 40 H 1.09002 * 109.47010 * 179.97438 * 25 9 8 41 41 H 1.08996 * 109.47352 * 299.99883 * 25 9 8 42 42 H 1.09004 * 109.47142 * 179.97438 * 26 5 1 43 43 H 1.09004 * 109.46978 * 60.00381 * 26 5 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3365 0.9512 0.0000 4 1 -0.3363 -0.4757 0.8238 5 6 -0.4896 -0.6926 -1.1994 6 1 -1.5797 -0.6922 -1.1997 7 6 0.0203 0.0287 -2.4487 8 6 1.5503 0.0288 -2.4487 9 6 2.0605 -1.4137 -2.4486 10 1 1.6972 -1.9275 -3.3386 11 6 3.5674 -1.4136 -2.4480 12 6 4.3767 -0.5280 -1.8208 13 7 5.6504 -0.9188 -2.1003 14 6 6.8213 -0.2870 -1.6567 15 6 8.0631 -0.7956 -2.0119 16 6 9.2146 -0.1717 -1.5731 17 6 9.1312 0.9589 -0.7812 18 6 10.3895 1.6370 -0.3036 19 8 11.1560 0.7209 0.4807 20 14 9.9412 3.1180 0.7340 21 6 7.8956 1.4678 -0.4258 22 6 6.7407 0.8480 -0.8616 23 7 5.5930 -1.9723 -2.8378 24 7 4.3678 -2.2919 -3.0624 25 6 1.5505 -2.1349 -1.1993 26 6 0.0205 -2.1350 -1.1994 27 1 -0.3433 -0.4849 -3.3386 28 1 -0.3431 1.0564 -2.4487 29 1 1.9136 0.5427 -1.5587 30 1 1.9136 0.5431 -3.3384 31 1 4.0734 0.3183 -1.2224 32 1 8.1289 -1.6784 -2.6307 33 1 10.1811 -0.5694 -1.8454 34 1 10.9770 1.9596 -1.1631 35 1 10.6943 0.3916 1.2641 36 1 11.1734 3.7951 1.2116 37 1 9.1166 4.0637 -0.0602 38 1 7.8335 2.3512 0.1924 39 1 5.7759 1.2462 -0.5841 40 1 1.9135 -3.1627 -1.1995 41 1 1.9138 -1.6210 -0.3094 42 1 -0.3432 -2.6490 -2.0892 43 1 -0.3429 -2.6488 -0.3094 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273910_12385126_17761092.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:04:15 Heat of formation + Delta-G solvation = 175.704927 kcal Electronic energy + Delta-G solvation = -24452.538817 eV Core-core repulsion = 21004.724344 eV Total energy + Delta-G solvation = -3447.814473 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 302.161 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.63431 -41.49632 -40.80864 -37.96452 -36.82038 -35.47189 -32.99661 -32.30949 -32.03227 -31.63478 -29.84560 -27.25990 -25.27256 -24.47240 -23.81698 -23.73568 -22.30556 -21.72050 -20.63493 -19.65740 -18.98699 -18.52015 -18.41506 -17.66623 -16.99993 -16.72165 -16.45410 -16.39567 -16.15371 -15.86085 -15.50860 -15.09283 -14.96842 -14.82692 -14.39339 -14.19232 -13.94303 -13.65557 -13.62440 -13.36576 -13.34422 -12.96035 -12.53017 -12.27180 -12.23686 -12.11064 -12.06691 -11.88420 -11.60993 -11.50227 -11.32309 -10.52887 -10.35526 -10.25864 -9.69883 -5.03939 -0.60024 0.09469 0.83013 1.15584 1.26605 1.36095 1.60706 1.70602 2.02766 2.43913 3.00818 3.19784 3.35023 3.38438 3.43682 3.55040 3.56826 3.64512 3.66321 3.85504 3.91795 3.96921 4.03213 4.07830 4.10635 4.20766 4.28762 4.31148 4.32770 4.40546 4.45341 4.56196 4.71204 4.71654 4.76605 4.88809 4.89673 4.94618 4.97729 5.04723 5.18055 5.23506 5.25565 5.29465 5.37492 5.37635 5.40293 5.74444 6.72856 7.31948 Molecular weight = 302.16amu Principal moments of inertia in cm(-1) A = 0.022628 B = 0.003330 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.131929 B = 8405.766117 C = 9212.482525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 H 0.432 0.568 3 H 0.453 0.547 4 H 0.451 0.549 5 C 0.061 3.939 6 H 0.167 0.833 7 C -0.142 4.142 8 C -0.126 4.126 9 C -0.007 4.007 10 H 0.068 0.932 11 C -0.023 4.023 12 C -0.030 4.030 13 N -0.241 5.241 14 C 0.103 3.897 15 C -0.118 4.118 16 C -0.087 4.087 17 C -0.107 4.107 18 C -0.088 4.088 19 O -0.559 6.559 20 Si 0.796 3.204 21 C -0.092 4.092 22 C -0.089 4.089 23 N -0.135 5.135 24 N -0.307 5.307 25 C -0.124 4.124 26 C -0.142 4.142 27 H 0.082 0.918 28 H 0.118 0.882 29 H 0.113 0.887 30 H 0.064 0.936 31 H 0.256 0.744 32 H 0.122 0.878 33 H 0.129 0.871 34 H 0.103 0.897 35 H 0.397 0.603 36 H -0.317 1.317 37 H -0.267 1.267 38 H 0.172 0.828 39 H 0.192 0.808 40 H 0.046 0.954 41 H 0.105 0.895 42 H 0.083 0.917 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.494 6.696 12.593 33.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.031 5.031 2 H 0.264 0.736 3 H 0.285 0.715 4 H 0.283 0.717 5 C -0.044 4.044 6 H 0.184 0.816 7 C -0.179 4.179 8 C -0.164 4.164 9 C -0.027 4.027 10 H 0.087 0.913 11 C -0.162 4.162 12 C -0.178 4.178 13 N -0.027 5.027 14 C 0.012 3.988 15 C -0.138 4.138 16 C -0.105 4.105 17 C -0.108 4.108 18 C -0.197 4.197 19 O -0.367 6.367 20 Si 0.701 3.299 21 C -0.109 4.109 22 C -0.109 4.109 23 N -0.111 5.111 24 N -0.172 5.172 25 C -0.162 4.162 26 C -0.180 4.180 27 H 0.101 0.899 28 H 0.136 0.864 29 H 0.131 0.869 30 H 0.082 0.918 31 H 0.272 0.728 32 H 0.140 0.860 33 H 0.147 0.853 34 H 0.120 0.880 35 H 0.247 0.753 36 H -0.246 1.246 37 H -0.194 1.194 38 H 0.189 0.811 39 H 0.209 0.791 40 H 0.065 0.935 41 H 0.124 0.876 42 H 0.101 0.899 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -29.306 6.382 11.185 32.011 hybrid contribution 1.096 -0.318 -0.922 1.468 sum -28.210 6.064 10.263 30.625 Atomic orbital electron populations 1.42545 1.21605 1.21518 1.17392 0.73645 0.71472 0.71683 1.22819 1.04573 0.92493 0.84507 0.81588 1.22069 0.94188 1.03854 0.97824 1.21842 0.96229 0.93039 1.05274 1.19743 0.83010 0.99322 1.00640 0.91306 1.22733 0.99304 0.94087 1.00040 1.24405 0.81008 1.05404 1.07016 1.44874 1.07297 1.18567 1.31972 1.17934 0.82800 0.96355 1.01720 1.21023 0.91315 1.00859 1.00621 1.20995 0.98087 0.95177 0.96268 1.20662 0.96254 0.96120 0.97808 1.25425 0.92267 1.01894 1.00131 1.86529 1.43892 1.64184 1.42102 0.93913 0.79793 0.73597 0.82561 1.21246 0.90201 1.00217 0.99267 1.21230 1.02014 0.91923 0.95755 1.78522 1.16530 1.03097 1.12970 1.75109 0.96107 1.25059 1.20887 1.21763 0.96225 1.01347 0.96842 1.22058 0.93918 0.95305 1.06681 0.89904 0.86381 0.86864 0.91760 0.72837 0.85975 0.85312 0.87965 0.75280 1.24586 1.19358 0.81078 0.79132 0.93488 0.87634 0.89879 0.87116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 48.80 4.05 -168.68 -0.68 48.11 16 2 H 0.43 -33.92 5.25 -89.69 -0.47 -34.40 16 3 H 0.45 -37.67 8.96 -89.70 -0.80 -38.47 16 4 H 0.45 -37.01 8.96 -89.69 -0.80 -37.81 16 5 C 0.06 -4.06 3.50 44.91 0.16 -3.90 16 6 H 0.17 -11.40 8.14 -2.38 -0.02 -11.42 16 7 C -0.14 8.14 5.59 30.59 0.17 8.31 16 8 C -0.13 6.49 4.54 30.60 0.14 6.63 16 9 C -0.01 0.27 2.65 -11.54 -0.03 0.24 16 10 H 0.07 -2.28 8.14 -2.39 -0.02 -2.30 16 11 C -0.02 0.65 6.16 41.60 0.26 0.91 16 12 C -0.03 0.99 10.10 83.36 0.84 1.83 16 13 N -0.24 5.05 3.56 -187.06 -0.67 4.38 16 14 C 0.10 -2.23 6.68 38.07 0.25 -1.98 16 15 C -0.12 1.89 9.62 22.38 0.22 2.11 16 16 C -0.09 1.46 9.60 22.25 0.21 1.68 16 17 C -0.11 2.28 5.39 -19.84 -0.11 2.17 16 18 C -0.09 1.69 2.82 71.24 0.20 1.89 16 19 O -0.56 9.13 12.77 -148.98 -1.90 7.23 16 20 Si 0.80 -17.68 29.78 68.60 2.04 -15.64 16 21 C -0.09 2.57 8.66 22.25 0.19 2.76 16 22 C -0.09 2.72 9.46 22.38 0.21 2.93 16 23 N -0.13 1.50 12.42 37.02 0.46 1.96 16 24 N -0.31 4.18 12.39 -48.59 -0.60 3.58 16 25 C -0.12 5.91 4.92 30.59 0.15 6.06 16 26 C -0.14 7.84 5.59 30.59 0.17 8.01 16 27 H 0.08 -4.12 8.14 -2.39 -0.02 -4.13 16 28 H 0.12 -7.20 8.14 -2.39 -0.02 -7.22 16 29 H 0.11 -7.08 5.89 -2.39 -0.01 -7.10 16 30 H 0.06 -2.78 8.14 -2.39 -0.02 -2.80 16 31 H 0.26 -12.48 6.54 -2.92 -0.02 -12.50 16 32 H 0.12 -1.49 7.69 -2.91 -0.02 -1.51 16 33 H 0.13 -1.95 8.06 -2.91 -0.02 -1.97 16 34 H 0.10 -1.66 7.96 -2.39 -0.02 -1.68 16 35 H 0.40 -10.05 8.70 -74.05 -0.64 -10.69 16 36 H -0.32 3.43 7.11 99.48 0.71 4.13 16 37 H -0.27 5.41 7.11 99.48 0.71 6.12 16 38 H 0.17 -5.82 4.87 -2.91 -0.01 -5.83 16 39 H 0.19 -8.08 6.77 -2.91 -0.02 -8.10 16 40 H 0.05 -1.70 8.14 -2.39 -0.02 -1.72 16 41 H 0.11 -6.05 6.65 -2.39 -0.02 -6.06 16 42 H 0.08 -3.97 8.14 -2.39 -0.02 -3.99 16 43 H 0.11 -6.39 8.14 -2.39 -0.02 -6.41 16 Total: 1.00 -106.65 335.89 0.07 -106.57 By element: Atomic # 1 Polarization: -194.25 SS G_CDS: -1.61 Total: -195.86 kcal Atomic # 6 Polarization: 36.62 SS G_CDS: 3.04 Total: 39.66 kcal Atomic # 7 Polarization: 59.53 SS G_CDS: -1.49 Total: 58.03 kcal Atomic # 8 Polarization: 9.13 SS G_CDS: -1.90 Total: 7.23 kcal Atomic # 14 Polarization: -17.68 SS G_CDS: 2.04 Total: -15.64 kcal Total: -106.65 0.07 -106.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273910_12385126_17761092.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 282.278 kcal (2) G-P(sol) polarization free energy of solvation -106.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 175.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -106.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 175.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds