Wall clock time and date at job start Tue Mar 9 2021 13:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86298 * 109.47605 * 2 1 4 4 C 1.53004 * 109.47295 * 119.99967 * 2 1 3 5 5 C 1.53010 * 112.99751 * 59.99834 * 4 2 1 6 6 N 1.46494 * 109.46950 * 309.66939 * 5 4 2 7 7 C 1.35314 * 125.86603 * 124.71514 * 6 5 4 8 8 C 1.35357 * 106.17409 * 179.90142 * 7 6 5 9 9 C 1.50698 * 126.75112 * 180.12067 * 8 7 6 10 10 H 1.08999 * 109.47594 * 205.29891 * 9 8 7 11 11 C 1.52999 * 109.47253 * 325.30399 * 9 8 7 12 12 C 1.53005 * 109.47165 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47078 * 300.00340 * 12 11 9 14 14 H 1.09007 * 109.46594 * 299.99491 * 13 12 11 15 15 C 1.53005 * 109.47078 * 179.97438 * 13 12 11 16 16 O 1.42899 * 109.47299 * 64.99397 * 15 13 12 17 17 C 1.52992 * 109.47611 * 59.99662 * 13 12 11 18 18 C 1.53005 * 109.47175 * 300.00278 * 17 13 12 19 19 N 1.33774 * 106.49652 * 0.35485 * 8 7 6 20 20 N 1.28633 * 108.88310 * 359.77513 * 19 8 7 21 21 C 1.54033 * 113.81397 * 288.17488 * 4 2 1 22 22 O 1.44445 * 85.42595 * 223.22950 * 21 4 2 23 23 C 1.44180 * 93.37742 * 24.09167 * 22 21 4 24 24 H 0.96703 * 114.00176 * 60.00012 * 1 2 3 25 25 H 1.09000 * 109.47224 * 239.99764 * 2 1 3 26 26 H 1.48506 * 109.99834 * 298.68369 * 3 2 1 27 27 H 1.48502 * 110.00011 * 59.99633 * 3 2 1 28 28 H 1.09000 * 109.46799 * 69.67104 * 5 4 2 29 29 H 1.08993 * 109.46781 * 189.66893 * 5 4 2 30 30 H 1.08000 * 126.91463 * 0.02562 * 7 6 5 31 31 H 1.08996 * 109.47232 * 299.99414 * 11 9 8 32 32 H 1.08996 * 109.47201 * 59.99798 * 11 9 8 33 33 H 1.08992 * 109.47533 * 179.97438 * 12 11 9 34 34 H 1.09007 * 109.46992 * 59.99587 * 12 11 9 35 35 H 1.08996 * 109.46807 * 184.99458 * 15 13 12 36 36 H 1.08996 * 109.46739 * 304.99693 * 15 13 12 37 37 H 0.96699 * 114.00263 * 180.02562 * 16 15 13 38 38 H 1.08996 * 109.47443 * 180.02562 * 17 13 12 39 39 H 1.09004 * 109.47248 * 59.99723 * 17 13 12 40 40 H 1.09004 * 109.46579 * 299.99854 * 18 17 13 41 41 H 1.08999 * 109.47518 * 179.97438 * 18 17 13 42 42 H 1.08999 * 113.86741 * 337.34295 * 21 4 2 43 43 H 1.09005 * 113.86121 * 109.04781 * 21 4 2 44 44 H 1.08998 * 113.86426 * 221.76601 * 23 22 21 45 45 H 1.08999 * 113.98675 * 90.07429 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9390 -0.7213 1.2493 5 6 1.4743 -2.1768 1.3308 6 7 0.0250 -2.2388 1.1263 7 6 -0.6130 -2.9841 0.1944 8 6 -1.9348 -2.7437 0.3595 9 6 -3.0662 -3.3401 -0.4374 10 1 -3.9254 -2.6702 -0.4061 11 6 -2.6219 -3.5322 -1.8888 12 6 -3.7705 -4.1384 -2.6978 13 6 -4.1569 -5.4924 -2.0992 14 1 -3.2974 -6.1620 -2.1306 15 6 -5.3059 -6.0982 -2.9078 16 8 -4.8560 -6.3854 -4.2334 17 6 -4.6012 -5.3003 -0.6479 18 6 -3.4526 -4.6942 0.1611 19 7 -2.0389 -1.8686 1.3660 20 7 -0.8600 -1.5895 1.7986 21 6 1.7319 0.0718 2.5534 22 8 3.0753 -0.3439 2.8834 23 6 3.4467 -0.5345 1.5034 24 1 -0.3934 0.4417 -0.7651 25 1 1.7923 -0.5139 -0.8900 26 1 1.5879 2.4585 -1.2243 27 1 1.5615 2.4679 1.2085 28 1 1.9754 -2.7619 0.5597 29 1 1.7205 -2.5823 2.3121 30 1 -0.1591 -3.6403 -0.5334 31 1 -2.3463 -2.5677 -2.3151 32 1 -1.7627 -4.2022 -1.9202 33 1 -3.4542 -4.2748 -3.7319 34 1 -4.6300 -3.4687 -2.6665 35 1 -5.6402 -7.0191 -2.4301 36 1 -6.1332 -5.3898 -2.9504 37 1 -5.5342 -6.7723 -4.8038 38 1 -4.8760 -6.2650 -0.2213 39 1 -5.4606 -4.6306 -0.6165 40 1 -2.5932 -5.3639 0.1298 41 1 -3.7692 -4.5569 1.1951 42 1 1.6268 1.1464 2.4041 43 1 0.9664 -0.3465 3.2070 44 1 4.0383 -1.4326 1.3260 45 1 3.8669 0.3533 1.0309 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273910_16762298_14775216.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:28:37 Heat of formation + Delta-G solvation = 9.694079 kcal Electronic energy + Delta-G solvation = -27198.231968 eV Core-core repulsion = 23414.076793 eV Total energy + Delta-G solvation = -3784.155175 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 310.173 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.09906 -41.89649 -39.95475 -37.87674 -37.41878 -35.67353 -33.70972 -32.30942 -31.67339 -30.55346 -28.07794 -27.70293 -26.54018 -25.80423 -23.80586 -23.34594 -22.76649 -21.51914 -20.53406 -20.11695 -18.80855 -18.17852 -18.15358 -17.65490 -17.18604 -16.75075 -16.50172 -16.36069 -15.93272 -15.75072 -15.61790 -15.20286 -14.90844 -14.77811 -14.43572 -14.31778 -14.06284 -13.72639 -13.66335 -13.27590 -13.08298 -13.02109 -12.76911 -12.37890 -12.31298 -12.19143 -12.08793 -12.02072 -11.60713 -11.57428 -11.36741 -11.19199 -11.12204 -10.91385 -10.75174 -10.66579 -10.39079 -9.85949 -5.06507 0.87523 1.18806 1.46991 1.56006 1.74247 1.88888 2.59006 2.67222 3.24405 3.29238 3.42325 3.58279 3.67378 3.76737 3.78384 3.95902 4.06072 4.11113 4.18065 4.23208 4.25065 4.33621 4.37487 4.42680 4.47523 4.48111 4.53781 4.60096 4.62286 4.64024 4.71366 4.74558 4.79715 4.89140 4.94329 5.00195 5.06837 5.08605 5.18307 5.22353 5.25099 5.35957 5.43701 5.48828 5.57647 5.85318 6.40426 6.91060 7.76405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.101 4.101 3 Si 0.740 3.260 4 C -0.125 4.125 5 C 0.136 3.864 6 N -0.263 5.263 7 C -0.035 4.035 8 C -0.026 4.026 9 C 0.006 3.994 10 H 0.067 0.933 11 C -0.099 4.099 12 C -0.106 4.106 13 C -0.085 4.085 14 H 0.074 0.926 15 C 0.075 3.925 16 O -0.593 6.593 17 C -0.108 4.108 18 C -0.101 4.101 19 N -0.317 5.317 20 N -0.091 5.091 21 C 0.032 3.968 22 O -0.395 6.395 23 C 0.062 3.938 24 H 0.382 0.618 25 H 0.105 0.895 26 H -0.298 1.298 27 H -0.307 1.307 28 H 0.156 0.844 29 H 0.107 0.893 30 H 0.215 0.785 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.049 0.951 37 H 0.395 0.605 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.051 0.949 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.142 0.858 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.514 -4.380 -6.163 9.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.212 4.212 3 Si 0.649 3.351 4 C -0.126 4.126 5 C 0.015 3.985 6 N -0.056 5.056 7 C -0.186 4.186 8 C -0.165 4.165 9 C -0.014 4.014 10 H 0.086 0.914 11 C -0.137 4.137 12 C -0.144 4.144 13 C -0.103 4.103 14 H 0.092 0.908 15 C -0.002 4.002 16 O -0.402 6.402 17 C -0.146 4.146 18 C -0.139 4.139 19 N -0.183 5.183 20 N -0.070 5.070 21 C -0.045 4.045 22 O -0.314 6.314 23 C -0.014 4.014 24 H 0.231 0.769 25 H 0.123 0.877 26 H -0.226 1.226 27 H -0.236 1.236 28 H 0.174 0.826 29 H 0.125 0.875 30 H 0.232 0.768 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.244 0.756 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.070 0.930 42 H 0.096 0.904 43 H 0.102 0.898 44 H 0.160 0.840 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.893 -2.635 -3.945 7.566 hybrid contribution -1.993 -0.413 -1.363 2.450 sum 3.900 -3.048 -5.308 7.258 Atomic orbital electron populations 1.86720 1.18395 1.79739 1.50264 1.26068 0.84372 1.10069 1.00666 0.95019 0.90348 0.74303 0.75464 1.23858 0.98795 0.95340 0.94580 1.22140 0.73144 0.96145 1.07025 1.47159 1.09058 1.27516 1.21912 1.23590 0.92750 1.03071 0.99185 1.22080 0.95154 1.00419 0.98858 1.19383 0.93168 0.95721 0.93146 0.91427 1.21500 0.98612 1.01126 0.92436 1.21465 0.98241 0.95533 0.99116 1.21138 0.98124 0.97108 0.93963 0.90759 1.22296 0.96228 0.98888 0.82797 1.86417 1.43750 1.85848 1.24137 1.21478 0.98009 1.01395 0.93686 1.21467 0.98835 0.95145 0.98451 1.74991 1.15120 1.15372 1.12798 1.78102 0.92541 1.16926 1.19471 1.24234 0.85617 0.99309 0.95345 1.89783 1.27641 1.87632 1.26344 1.24380 0.91464 1.05002 0.80514 0.76931 0.87675 1.22565 1.23604 0.82632 0.87506 0.76819 0.91899 0.90465 0.91725 0.92492 0.92915 0.93259 0.75592 0.90854 0.91714 0.91100 0.93029 0.90416 0.89827 0.84008 0.86386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.86 9.36 -148.98 -1.39 -2.25 16 2 C -0.10 0.52 2.42 71.98 0.17 0.70 16 3 Si 0.74 -1.96 28.41 68.60 1.95 -0.01 16 4 C -0.12 0.60 0.81 -51.48 -0.04 0.56 16 5 C 0.14 -0.83 5.87 86.38 0.51 -0.32 16 6 N -0.26 -0.42 2.09 -347.73 -0.73 -1.15 16 7 C -0.04 0.02 10.49 83.49 0.88 0.89 16 8 C -0.03 -0.14 6.16 41.60 0.26 0.12 16 9 C 0.01 0.01 2.65 -11.54 -0.03 -0.02 16 10 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 11 C -0.10 0.18 4.80 30.60 0.15 0.33 16 12 C -0.11 0.06 5.10 30.60 0.16 0.22 16 13 C -0.08 0.10 2.43 -10.79 -0.03 0.07 16 14 H 0.07 -0.01 8.14 -2.38 -0.02 -0.03 16 15 C 0.08 -0.11 6.43 71.98 0.46 0.35 16 16 O -0.59 -0.32 13.20 -148.98 -1.97 -2.28 16 17 C -0.11 0.16 5.20 30.59 0.16 0.32 16 18 C -0.10 -0.05 5.18 30.60 0.16 0.10 16 19 N -0.32 -4.11 12.41 -48.60 -0.60 -4.72 16 20 N -0.09 -0.97 10.54 37.02 0.39 -0.58 16 21 C 0.03 0.10 7.68 72.29 0.55 0.65 16 22 O -0.39 -0.56 12.39 -148.98 -1.85 -2.41 16 23 C 0.06 -0.57 7.95 72.29 0.57 0.00 16 24 H 0.38 -0.88 8.74 -74.06 -0.65 -1.53 16 25 H 0.11 -1.19 7.96 -2.39 -0.02 -1.21 16 26 H -0.30 -1.05 7.11 99.48 0.71 -0.34 16 27 H -0.31 -2.22 6.05 99.48 0.60 -1.62 16 28 H 0.16 -2.34 8.07 -2.39 -0.02 -2.36 16 29 H 0.11 -0.57 8.06 -2.39 -0.02 -0.59 16 30 H 0.22 -1.85 7.48 -2.91 -0.02 -1.87 16 31 H 0.06 -0.08 8.14 -2.39 -0.02 -0.09 16 32 H 0.08 -0.34 7.37 -2.39 -0.02 -0.36 16 33 H 0.06 0.08 7.82 -2.39 -0.02 0.07 16 34 H 0.06 0.02 8.14 -2.38 -0.02 0.00 16 35 H 0.05 -0.17 8.14 -2.39 -0.02 -0.19 16 36 H 0.05 -0.12 8.14 -2.39 -0.02 -0.14 16 37 H 0.39 -2.92 9.12 -74.06 -0.68 -3.59 16 38 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 39 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 40 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 41 H 0.05 0.20 8.14 -2.39 -0.02 0.18 16 42 H 0.08 0.42 4.96 -2.39 -0.01 0.41 16 43 H 0.08 0.63 7.59 -2.38 -0.02 0.61 16 44 H 0.14 -2.25 8.10 -2.39 -0.02 -2.27 16 45 H 0.12 -1.56 5.56 -2.39 -0.01 -1.57 16 Total: 0.00 -25.31 346.97 -0.65 -25.96 By element: Atomic # 1 Polarization: -16.14 SS G_CDS: -0.39 Total: -16.53 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: 3.93 Total: 3.97 kcal Atomic # 7 Polarization: -5.50 SS G_CDS: -0.94 Total: -6.44 kcal Atomic # 8 Polarization: -1.74 SS G_CDS: -5.21 Total: -6.94 kcal Atomic # 14 Polarization: -1.96 SS G_CDS: 1.95 Total: -0.01 kcal Total: -25.31 -0.65 -25.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273910_16762298_14775216.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.658 kcal (2) G-P(sol) polarization free energy of solvation -25.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds