Wall clock time and date at job start Tue Mar 9 2021 13:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00907 * 1 3 3 H 1.00893 * 109.47224 * 1 2 4 4 H 1.00898 * 109.46729 * 240.00049 * 1 2 3 5 5 C 1.46901 * 109.46862 * 120.00370 * 1 2 3 6 6 C 1.53002 * 109.47071 * 59.99803 * 5 1 2 7 7 H 1.08997 * 109.47317 * 55.00096 * 6 5 1 8 8 C 1.53004 * 109.46924 * 175.00007 * 6 5 1 9 9 C 1.53002 * 109.46924 * 179.97438 * 8 6 5 10 10 C 1.52992 * 109.47177 * 299.99678 * 9 8 6 11 11 H 1.09002 * 109.47792 * 300.00419 * 10 9 8 12 12 C 1.50706 * 109.47323 * 179.97438 * 10 9 8 13 13 C 1.35348 * 126.75485 * 275.01191 * 12 10 9 14 14 N 1.35306 * 106.17456 * 180.02562 * 13 12 10 15 15 C 1.46504 * 125.86748 * 179.97438 * 14 13 12 16 16 C 1.52999 * 109.47335 * 124.99706 * 15 14 13 17 17 C 1.53004 * 112.99712 * 309.66450 * 16 15 14 18 18 O 1.42892 * 109.47402 * 300.00216 * 17 16 15 19 19 Si 1.86298 * 109.46808 * 179.97438 * 17 16 15 20 20 C 1.54033 * 113.81463 * 81.49224 * 16 15 14 21 21 O 1.44448 * 85.42693 * 91.81145 * 20 16 15 22 22 C 1.44178 * 93.37662 * 24.08344 * 21 20 16 23 23 N 1.28714 * 108.26341 * 0.25626 * 14 13 12 24 24 N 1.28629 * 110.18010 * 359.56097 * 23 14 13 25 25 C 1.53004 * 109.46931 * 60.00326 * 10 9 8 26 26 C 1.52992 * 109.47250 * 299.99629 * 25 10 9 27 27 H 1.08997 * 109.46870 * 299.99884 * 5 1 2 28 28 H 1.08996 * 109.47095 * 180.02562 * 5 1 2 29 29 H 1.08997 * 109.47051 * 59.99926 * 8 6 5 30 30 H 1.09003 * 109.46797 * 300.00368 * 8 6 5 31 31 H 1.09004 * 109.46506 * 179.97438 * 9 8 6 32 32 H 1.09002 * 109.47102 * 60.00520 * 9 8 6 33 33 H 1.08004 * 126.91244 * 0.02562 * 13 12 10 34 34 H 1.08996 * 109.47107 * 4.99495 * 15 14 13 35 35 H 1.08999 * 109.46988 * 244.99442 * 15 14 13 36 36 H 1.09004 * 109.46524 * 60.00422 * 17 16 15 37 37 H 0.96703 * 114.00176 * 299.99929 * 18 17 16 38 38 H 1.48506 * 109.99834 * 58.68815 * 19 17 16 39 39 H 1.48502 * 110.00011 * 180.02562 * 19 17 16 40 40 H 1.09009 * 113.86060 * 205.91370 * 20 16 15 41 41 H 1.08999 * 113.86871 * 337.61773 * 20 16 15 42 42 H 1.08999 * 113.86448 * 221.76557 * 22 21 20 43 43 H 1.09009 * 113.97986 * 90.08186 * 22 21 20 44 44 H 1.08997 * 109.47051 * 59.99903 * 25 10 9 45 45 H 1.09003 * 109.47315 * 179.97438 * 25 10 9 46 46 H 1.08997 * 109.47317 * 300.00111 * 26 25 10 47 47 H 1.08999 * 109.47477 * 179.97438 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0091 0.0000 0.0000 3 1 -0.3363 0.9512 0.0000 4 1 -0.3363 -0.4756 0.8239 5 6 -0.4896 -0.6926 -1.1994 6 6 0.0205 -2.1351 -1.1993 7 1 -0.2679 -2.6224 -0.2680 8 6 -0.5896 -2.8918 -2.3810 9 6 -0.0790 -4.3341 -2.3812 10 6 1.4457 -4.3353 -2.5073 11 1 1.7338 -3.8477 -3.4387 12 6 1.9488 -5.7560 -2.5070 13 6 2.2191 -6.5191 -1.4224 14 7 2.6424 -7.7131 -1.8977 15 6 3.0507 -8.8636 -1.0877 16 6 2.2319 -10.0902 -1.4947 17 6 0.7261 -9.8205 -1.5252 18 8 0.2879 -9.4177 -0.2262 19 14 -0.1725 -11.3721 -2.0311 20 6 2.7620 -10.8022 -2.7535 21 8 3.5262 -11.6116 -1.8330 22 6 2.6184 -11.3750 -0.7381 23 7 2.6305 -7.6625 -3.1838 24 7 2.2162 -6.5106 -3.5787 25 6 2.0558 -3.5786 -1.3257 26 6 1.5453 -2.1364 -1.3254 27 1 -0.1263 -0.1788 -2.0894 28 1 -1.5796 -0.6922 -1.1997 29 1 -0.3012 -2.4045 -3.3123 30 1 -1.6759 -2.8904 -2.2914 31 1 -0.5140 -4.8733 -3.2228 32 1 -0.3670 -4.8217 -1.4499 33 1 2.1175 -6.2327 -0.3860 34 1 2.8787 -8.6452 -0.0337 35 1 4.1099 -9.0640 -1.2490 36 1 0.5136 -9.0278 -2.2425 37 1 0.4458 -10.0764 0.4640 38 1 0.1344 -12.4700 -1.0792 39 1 -1.6361 -11.1232 -2.0652 40 1 1.9995 -11.3570 -3.3004 41 1 3.3722 -10.1669 -3.3955 42 1 3.1150 -11.1932 0.2150 43 1 1.8114 -12.1043 -0.6662 44 1 1.7678 -4.0662 -0.3943 45 1 3.1421 -3.5798 -1.4152 46 1 1.8333 -1.6488 -2.2567 47 1 1.9795 -1.5974 -0.4833 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_273910_16762298_17850172.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:28:53 Heat of formation + Delta-G solvation = 132.640692 kcal Electronic energy + Delta-G solvation = -27262.154493 eV Core-core repulsion = 23567.393606 eV Total energy + Delta-G solvation = -3694.760887 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 310.192 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.36447 -42.07341 -40.64949 -38.21296 -37.99442 -35.82509 -33.65873 -32.31184 -31.71262 -30.61847 -28.32306 -27.78141 -26.68915 -26.06428 -24.02859 -23.50455 -23.01915 -21.78098 -20.73171 -20.36226 -18.97124 -18.73253 -18.49400 -18.17415 -17.77174 -17.29441 -16.81956 -16.78302 -16.65271 -16.22773 -15.89759 -15.62453 -15.23713 -15.09361 -14.88128 -14.76548 -14.35366 -13.96617 -13.85589 -13.65405 -13.55832 -13.31448 -13.15007 -12.84194 -12.63636 -12.38726 -12.26280 -12.06808 -12.03890 -11.75207 -11.54850 -11.51347 -11.34057 -11.21495 -11.04873 -10.70552 -10.67488 -10.08005 -5.08583 0.62271 1.06408 1.32534 1.33705 1.53187 1.74023 1.77311 2.47068 2.66879 3.13978 3.20265 3.30380 3.36446 3.46042 3.56253 3.62753 3.76326 3.85762 3.95810 3.96798 4.07255 4.11921 4.16882 4.24382 4.25381 4.28676 4.34218 4.36343 4.42314 4.50741 4.51413 4.57666 4.61014 4.64351 4.74233 4.80103 4.82283 4.85007 4.88300 4.96392 5.03102 5.13060 5.22520 5.25524 5.28947 5.34222 5.41186 5.55350 5.60557 6.34063 7.52294 Molecular weight = 310.19amu Principal moments of inertia in cm(-1) A = 0.023493 B = 0.003514 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.541586 B = 7966.336478 C = 8322.809563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 H 0.439 0.561 3 H 0.452 0.548 4 H 0.445 0.555 5 C 0.011 3.989 6 C -0.108 4.108 7 H 0.112 0.888 8 C -0.112 4.112 9 C -0.109 4.109 10 C 0.001 3.999 11 H 0.070 0.930 12 C -0.033 4.033 13 C -0.029 4.029 14 N -0.280 5.280 15 C 0.144 3.856 16 C -0.161 4.161 17 C -0.084 4.084 18 O -0.536 6.536 19 Si 0.708 3.292 20 C 0.045 3.955 21 O -0.391 6.391 22 C 0.035 3.965 23 N -0.117 5.117 24 N -0.312 5.312 25 C -0.112 4.112 26 C -0.127 4.127 27 H 0.135 0.865 28 H 0.141 0.859 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.031 0.969 32 H 0.068 0.932 33 H 0.221 0.779 34 H 0.147 0.853 35 H 0.111 0.889 36 H 0.093 0.907 37 H 0.391 0.609 38 H -0.255 1.255 39 H -0.304 1.304 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.126 0.874 43 H 0.095 0.905 44 H 0.082 0.918 45 H 0.055 0.945 46 H 0.073 0.927 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.614 33.262 13.960 36.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.025 5.025 2 H 0.270 0.730 3 H 0.283 0.717 4 H 0.275 0.725 5 C -0.114 4.114 6 C -0.127 4.127 7 H 0.130 0.870 8 C -0.150 4.150 9 C -0.148 4.148 10 C -0.019 4.019 11 H 0.088 0.912 12 C -0.173 4.173 13 C -0.181 4.181 14 N -0.073 5.073 15 C 0.024 3.976 16 C -0.163 4.163 17 C -0.196 4.196 18 O -0.344 6.344 19 Si 0.613 3.387 20 C -0.031 4.031 21 O -0.310 6.310 22 C -0.041 4.041 23 N -0.095 5.095 24 N -0.177 5.177 25 C -0.150 4.150 26 C -0.164 4.164 27 H 0.153 0.847 28 H 0.159 0.841 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.050 0.950 32 H 0.087 0.913 33 H 0.238 0.762 34 H 0.164 0.836 35 H 0.129 0.871 36 H 0.111 0.889 37 H 0.241 0.759 38 H -0.180 1.180 39 H -0.232 1.232 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.144 0.856 43 H 0.113 0.887 44 H 0.101 0.899 45 H 0.074 0.926 46 H 0.092 0.908 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.908 32.081 12.295 35.044 hybrid contribution -0.060 -0.146 1.612 1.620 sum -6.968 31.936 13.907 35.522 Atomic orbital electron populations 1.42155 1.21768 1.21136 1.17429 0.73037 0.71696 0.72485 1.23437 1.05310 0.93396 0.89258 1.21612 0.95335 0.94651 1.01061 0.87025 1.21476 1.00977 0.93441 0.99153 1.21513 0.93118 0.98617 1.01525 1.19584 0.95457 0.85924 1.00972 0.91208 1.22589 1.06071 1.00135 0.88457 1.23850 1.05680 0.85597 1.02936 1.47433 1.41510 1.12536 1.05805 1.22002 0.99813 0.80026 0.95800 1.24437 0.96349 0.96496 0.98982 1.25870 0.95208 1.10067 0.88444 1.86536 1.84400 1.46370 1.17102 0.94125 0.77811 0.75858 0.90860 1.24237 0.94871 0.91312 0.92672 1.89823 1.43986 1.74061 1.23163 1.24465 0.93757 0.92285 0.93632 1.78270 1.20788 1.16655 0.93818 1.75067 1.15535 0.98843 1.28299 1.21576 0.99909 0.96748 0.96794 1.21849 0.94421 0.95658 1.04504 0.84716 0.84119 0.91355 0.90297 0.94972 0.91295 0.76235 0.83554 0.87138 0.88860 0.75922 1.18011 1.23210 0.87635 0.87825 0.85604 0.88686 0.89915 0.92632 0.90780 0.87330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 48.82 4.48 -186.72 -0.84 47.99 16 2 H 0.44 -34.93 7.26 -89.69 -0.65 -35.58 16 3 H 0.45 -36.95 9.02 -89.70 -0.81 -37.75 16 4 H 0.44 -36.03 8.96 -89.70 -0.80 -36.83 16 5 C 0.01 -0.75 6.01 86.30 0.52 -0.23 16 6 C -0.11 5.97 2.35 -10.79 -0.03 5.94 16 7 H 0.11 -6.45 8.14 -2.39 -0.02 -6.47 16 8 C -0.11 4.75 5.20 30.60 0.16 4.90 16 9 C -0.11 3.41 5.19 30.59 0.16 3.56 16 10 C 0.00 -0.03 2.65 -11.54 -0.03 -0.06 16 11 H 0.07 -1.72 8.14 -2.39 -0.02 -1.74 16 12 C -0.03 0.64 6.16 41.60 0.26 0.89 16 13 C -0.03 0.66 10.75 83.49 0.90 1.56 16 14 N -0.28 5.08 2.61 -347.74 -0.91 4.18 16 15 C 0.14 -3.29 5.64 86.38 0.49 -2.80 16 16 C -0.16 3.30 0.70 -51.48 -0.04 3.26 16 17 C -0.08 1.57 2.20 71.98 0.16 1.73 16 18 O -0.54 11.00 12.66 -148.98 -1.89 9.11 16 19 Si 0.71 -11.15 28.46 68.60 1.95 -9.20 16 20 C 0.05 -0.73 7.69 72.29 0.56 -0.18 16 21 O -0.39 5.13 12.39 -148.98 -1.85 3.29 16 22 C 0.04 -0.72 7.67 72.29 0.55 -0.17 16 23 N -0.12 1.21 12.03 37.02 0.45 1.66 16 24 N -0.31 2.89 12.41 -48.60 -0.60 2.28 16 25 C -0.11 4.34 4.80 30.59 0.15 4.49 16 26 C -0.13 6.48 4.95 30.59 0.15 6.64 16 27 H 0.13 -8.88 8.14 -2.39 -0.02 -8.90 16 28 H 0.14 -9.42 8.14 -2.39 -0.02 -9.44 16 29 H 0.07 -2.73 8.14 -2.39 -0.02 -2.74 16 30 H 0.08 -3.32 8.14 -2.39 -0.02 -3.34 16 31 H 0.03 -0.70 8.14 -2.38 -0.02 -0.72 16 32 H 0.07 -2.16 8.14 -2.39 -0.02 -2.18 16 33 H 0.22 -6.98 7.48 -2.91 -0.02 -7.01 16 34 H 0.15 -4.33 8.07 -2.39 -0.02 -4.35 16 35 H 0.11 -2.44 8.06 -2.39 -0.02 -2.46 16 36 H 0.09 -1.35 7.29 -2.38 -0.02 -1.37 16 37 H 0.39 -10.57 8.44 -74.06 -0.62 -11.20 16 38 H -0.25 3.62 6.00 99.48 0.60 4.22 16 39 H -0.30 2.03 7.11 99.48 0.71 2.74 16 40 H 0.11 -1.99 5.55 -2.38 -0.01 -2.00 16 41 H 0.10 -1.47 7.59 -2.39 -0.02 -1.49 16 42 H 0.13 -3.22 8.10 -2.39 -0.02 -3.24 16 43 H 0.10 -1.92 4.93 -2.38 -0.01 -1.93 16 44 H 0.08 -3.39 7.37 -2.39 -0.02 -3.41 16 45 H 0.05 -1.87 8.14 -2.39 -0.02 -1.89 16 46 H 0.07 -3.56 8.14 -2.39 -0.02 -3.58 16 47 H 0.11 -6.51 6.74 -2.39 -0.02 -6.53 16 Total: 1.00 -98.66 356.39 -1.68 -100.34 By element: Atomic # 1 Polarization: -187.24 SS G_CDS: -1.95 Total: -189.19 kcal Atomic # 6 Polarization: 25.59 SS G_CDS: 3.95 Total: 29.54 kcal Atomic # 7 Polarization: 58.01 SS G_CDS: -1.90 Total: 56.11 kcal Atomic # 8 Polarization: 16.13 SS G_CDS: -3.73 Total: 12.40 kcal Atomic # 14 Polarization: -11.15 SS G_CDS: 1.95 Total: -9.20 kcal Total: -98.66 -1.68 -100.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273910_16762298_17850172.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 232.985 kcal (2) G-P(sol) polarization free energy of solvation -98.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds