Wall clock time and date at job start Tue Mar 9 2021 13:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.46876 * 2 1 4 4 C 1.53000 * 109.47411 * 239.99316 * 2 1 3 5 5 O 1.45205 * 109.46600 * 119.99339 * 2 1 3 6 6 C 1.34630 * 116.99931 * 60.00759 * 5 2 1 7 7 O 1.21517 * 120.00508 * 359.97438 * 6 5 2 8 8 N 1.34778 * 120.00053 * 179.97438 * 6 5 2 9 9 C 1.46504 * 119.99966 * 179.97438 * 8 6 5 10 10 H 1.08997 * 112.85092 * 336.19726 * 9 8 6 11 11 C 1.53774 * 113.61288 * 107.50751 * 9 8 6 12 12 C 1.53782 * 87.08554 * 89.11378 * 11 9 8 13 13 H 1.08998 * 113.68789 * 270.86972 * 12 11 9 14 14 C 1.53005 * 113.61459 * 139.98006 * 12 11 9 15 15 N 1.46501 * 109.47141 * 87.50302 * 14 12 11 16 16 C 1.35208 * 125.74829 * 124.99604 * 15 14 12 17 17 C 1.36489 * 106.04132 * 180.02562 * 16 15 14 18 18 C 1.48446 * 126.90409 * 180.02562 * 17 16 15 19 19 C 1.39288 * 120.11730 * 179.97438 * 18 17 16 20 20 C 1.38050 * 119.87820 * 180.02562 * 19 18 17 21 21 C 1.50703 * 119.94027 * 179.97438 * 20 19 18 22 22 O 1.42905 * 109.47264 * 300.00081 * 21 20 19 23 23 Si 1.86299 * 109.47187 * 180.02562 * 21 20 19 24 24 C 1.38299 * 120.12139 * 0.25922 * 20 19 18 25 25 C 1.38336 * 120.23466 * 359.48997 * 24 20 19 26 26 C 1.38009 * 120.12000 * 0.50393 * 25 24 20 27 27 N 1.34503 * 106.19333 * 0.25876 * 17 16 15 28 28 N 1.28615 * 108.77690 * 359.57118 * 27 17 16 29 29 C 1.53777 * 87.07958 * 25.43127 * 12 11 9 30 30 H 1.08996 * 109.47344 * 300.00412 * 1 2 3 31 31 H 1.09004 * 109.47381 * 60.00877 * 1 2 3 32 32 H 1.09000 * 109.46871 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47047 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47164 * 299.99279 * 3 2 1 35 35 H 1.08996 * 109.47471 * 59.99665 * 3 2 1 36 36 H 1.08991 * 109.47087 * 300.00517 * 4 2 1 37 37 H 1.09007 * 109.46758 * 60.00300 * 4 2 1 38 38 H 1.08995 * 109.47079 * 179.97438 * 4 2 1 39 39 H 0.97001 * 120.00025 * 0.02562 * 8 6 5 40 40 H 1.09004 * 113.61557 * 334.55931 * 11 9 8 41 41 H 1.09005 * 113.61386 * 203.66260 * 11 9 8 42 42 H 1.09003 * 109.47179 * 327.50219 * 14 12 11 43 43 H 1.09003 * 109.46475 * 207.50363 * 14 12 11 44 44 H 1.07997 * 126.98346 * 0.02562 * 16 15 14 45 45 H 1.07998 * 120.06384 * 0.02562 * 19 18 17 46 46 H 1.09004 * 109.47113 * 60.00080 * 21 20 19 47 47 H 0.96702 * 113.99404 * 300.00033 * 22 21 20 48 48 H 1.48504 * 109.99873 * 180.02562 * 23 21 20 49 49 H 1.48505 * 109.99870 * 301.31580 * 23 21 20 50 50 H 1.08001 * 119.87801 * 179.72261 * 24 20 19 51 51 H 1.08000 * 119.93928 * 180.23414 * 25 24 20 52 52 H 1.08002 * 120.05986 * 179.76653 * 26 25 24 53 53 H 1.09007 * 113.61705 * 89.11767 * 29 12 11 54 54 H 1.08997 * 113.61548 * 219.93684 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7214 -1.2491 5 8 2.0139 -0.6844 1.1857 6 6 1.6522 -1.9722 1.3385 7 8 0.9509 -2.5095 0.5041 8 7 2.0679 -2.6655 2.4169 9 6 1.6738 -4.0667 2.5835 10 1 0.7591 -4.3159 2.0456 11 6 2.8216 -5.0618 2.3449 12 6 3.1499 -4.9209 3.8406 13 1 3.8467 -4.1125 4.0617 14 6 3.5395 -6.2407 4.5096 15 7 4.9803 -6.4582 4.3583 16 6 5.8552 -6.6832 5.3643 17 6 7.0779 -6.8283 4.7754 18 6 8.3698 -7.0928 5.4571 19 6 9.5404 -7.2169 4.7124 20 6 10.7391 -7.4634 5.3514 21 6 12.0063 -7.5984 4.5470 22 8 11.8740 -8.6851 3.6284 23 14 13.4377 -7.9261 5.6936 24 6 10.7781 -7.5925 6.7278 25 6 9.6194 -7.4650 7.4725 26 6 8.4157 -7.2185 6.8440 27 7 6.8779 -6.6783 3.4538 28 7 5.6265 -6.4669 3.2459 29 6 1.6753 -4.5371 4.0476 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5137 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 3.1299 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.6767 -1.7489 -1.2491 37 1 1.6767 -0.2076 -2.1392 38 1 3.1300 -0.7210 -1.2493 39 1 2.6274 -2.2365 3.0832 40 1 3.6026 -4.6784 1.6883 41 1 2.4834 -6.0594 2.0642 42 1 2.9968 -7.0606 4.0391 43 1 3.2876 -6.1989 5.5693 44 1 5.6319 -6.7371 6.4196 45 1 9.5104 -7.1204 3.6372 46 1 12.1863 -6.6759 3.9950 47 1 11.7118 -9.5396 4.0510 48 1 14.6935 -8.0607 4.9125 49 1 13.5664 -6.8187 6.6746 50 1 11.7173 -7.7898 7.2232 51 1 9.6560 -7.5630 8.5475 52 1 7.5110 -7.1229 7.4261 53 1 1.0235 -5.3911 4.2325 54 1 1.5307 -3.7309 4.7668 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_274090_15734088_14928536.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:29:27 Heat of formation + Delta-G solvation = 39.795312 kcal Electronic energy + Delta-G solvation = -34874.788523 eV Core-core repulsion = 30202.532924 eV Total energy + Delta-G solvation = -4672.255599 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 387.199 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -44.25518 -42.00235 -40.57461 -40.38565 -38.05658 -37.64203 -35.95953 -35.28115 -34.00386 -33.63567 -32.24227 -30.67640 -29.48811 -28.43317 -28.36390 -26.80860 -26.76084 -25.30945 -24.75108 -23.67985 -23.25406 -21.93485 -21.55336 -21.19634 -20.38551 -19.41682 -18.77106 -18.10256 -17.70945 -17.40554 -17.26376 -17.20471 -16.66370 -16.63791 -16.22128 -15.90947 -15.80403 -15.63011 -15.50383 -15.30097 -15.18823 -14.83967 -14.62656 -14.51009 -14.20503 -14.05373 -13.68733 -13.54399 -13.42008 -13.29509 -13.09194 -12.99102 -12.96921 -12.93309 -12.89117 -12.58129 -12.44797 -12.37565 -12.29924 -12.03521 -11.95976 -11.78574 -11.63027 -11.46551 -11.33028 -11.21147 -11.18420 -10.83865 -10.45385 -10.24421 -9.80291 -9.26819 -5.00174 -0.05516 0.37626 0.67303 1.07308 1.30663 1.41732 1.62501 1.65603 1.65770 1.96869 2.87054 3.04315 3.15691 3.30442 3.39790 3.46908 3.57663 3.67669 3.68457 3.70920 3.74868 3.80703 3.87968 3.97268 4.07438 4.12716 4.16620 4.19197 4.34480 4.35101 4.43244 4.45364 4.54880 4.56189 4.60672 4.68822 4.70006 4.73862 4.77593 4.78578 4.81201 4.81293 4.85259 4.90468 5.01596 5.02200 5.06121 5.09184 5.10878 5.20721 5.25497 5.41792 5.47792 5.51834 5.54700 5.57413 5.64158 5.98340 6.29555 6.75172 7.25739 7.44986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.181 4.181 5 O -0.371 6.371 6 C 0.645 3.355 7 O -0.592 6.592 8 N -0.685 5.685 9 C 0.125 3.875 10 H 0.097 0.903 11 C -0.145 4.145 12 C -0.116 4.116 13 H 0.089 0.911 14 C 0.114 3.886 15 N -0.278 5.278 16 C -0.016 4.016 17 C -0.010 4.010 18 C -0.021 4.021 19 C -0.093 4.093 20 C -0.125 4.125 21 C -0.087 4.087 22 O -0.560 6.560 23 Si 0.796 3.204 24 C -0.116 4.116 25 C -0.107 4.107 26 C -0.096 4.096 27 N -0.308 5.308 28 N -0.109 5.109 29 C -0.107 4.107 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.100 0.900 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.088 0.912 38 H 0.057 0.943 39 H 0.415 0.585 40 H 0.045 0.955 41 H 0.104 0.896 42 H 0.117 0.883 43 H 0.155 0.845 44 H 0.242 0.758 45 H 0.101 0.899 46 H 0.095 0.905 47 H 0.394 0.606 48 H -0.303 1.303 49 H -0.278 1.278 50 H 0.149 0.851 51 H 0.165 0.835 52 H 0.160 0.840 53 H 0.132 0.868 54 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.376 -0.993 12.066 12.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.238 4.238 5 O -0.286 6.286 6 C 0.398 3.602 7 O -0.483 6.483 8 N -0.344 5.344 9 C 0.021 3.979 10 H 0.115 0.885 11 C -0.184 4.184 12 C -0.135 4.135 13 H 0.107 0.893 14 C -0.005 4.005 15 N -0.070 5.070 16 C -0.168 4.168 17 C -0.147 4.147 18 C -0.023 4.023 19 C -0.112 4.112 20 C -0.126 4.126 21 C -0.196 4.196 22 O -0.368 6.368 23 Si 0.701 3.299 24 C -0.134 4.134 25 C -0.124 4.124 26 C -0.115 4.115 27 N -0.174 5.174 28 N -0.087 5.087 29 C -0.145 4.145 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.118 0.882 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.107 0.893 38 H 0.076 0.924 39 H 0.251 0.749 40 H 0.064 0.936 41 H 0.122 0.878 42 H 0.135 0.865 43 H 0.172 0.828 44 H 0.258 0.742 45 H 0.120 0.880 46 H 0.112 0.888 47 H 0.244 0.756 48 H -0.232 1.232 49 H -0.205 1.205 50 H 0.166 0.834 51 H 0.182 0.818 52 H 0.178 0.822 53 H 0.150 0.850 54 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.073 -0.261 9.872 10.682 hybrid contribution 0.118 0.647 -0.095 0.665 sum -3.955 0.386 9.778 10.554 Atomic orbital electron populations 1.22462 0.93676 1.03765 1.03659 1.22370 0.94715 0.92526 0.81322 1.21893 1.02298 0.90874 1.04403 1.22478 1.01407 1.02291 0.97626 1.86307 1.71588 1.23344 1.47326 1.18346 0.78610 0.80728 0.82483 1.90906 1.42302 1.71018 1.44057 1.44403 1.54901 1.12047 1.23064 1.21951 0.98347 0.77815 0.99820 0.88518 1.23536 0.97870 1.00452 0.96528 1.22832 0.98495 0.96522 0.95693 0.89298 1.22743 0.71792 0.99321 1.06644 1.47698 1.11392 1.43626 1.04308 1.24218 0.88013 1.06363 0.98249 1.20772 0.95020 1.08785 0.90168 1.17890 0.88841 1.01941 0.93629 1.20957 0.92088 0.98657 0.99507 1.20317 0.95118 1.02272 0.94874 1.25423 1.03101 0.92418 0.98631 1.86477 1.95151 1.19298 1.35905 0.93604 0.72466 0.86911 0.76918 1.21364 1.00040 0.99683 0.92305 1.21440 0.91138 0.98104 1.01747 1.21469 1.00142 0.98233 0.91626 1.75288 1.07846 1.17345 1.16933 1.78223 0.99532 1.20570 1.10414 1.23308 0.94030 1.03322 0.93877 0.91696 0.89394 0.91740 0.91490 0.88185 0.90953 0.91858 0.89284 0.92379 0.74884 0.93618 0.87808 0.86495 0.82755 0.74227 0.88032 0.88753 0.75583 1.23155 1.20451 0.83430 0.81756 0.82237 0.85019 0.88458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.67 8.37 71.98 0.60 -0.07 16 2 C 0.13 0.54 1.13 -10.80 -0.01 0.53 16 3 C -0.14 0.11 8.85 71.98 0.64 0.75 16 4 C -0.18 -0.97 8.37 71.98 0.60 -0.37 16 5 O -0.37 -2.57 9.94 -55.40 -0.55 -3.12 16 6 C 0.64 5.05 8.06 129.79 1.05 6.10 16 7 O -0.59 -7.78 11.48 19.79 0.23 -7.56 16 8 N -0.69 -0.54 5.27 -567.60 -2.99 -3.53 16 9 C 0.12 -0.32 4.32 45.52 0.20 -0.12 16 10 H 0.10 0.08 7.46 -2.39 -0.02 0.06 16 11 C -0.15 0.24 7.43 31.12 0.23 0.48 16 12 C -0.12 0.93 3.63 -10.27 -0.04 0.89 16 13 H 0.09 -0.48 8.14 -2.39 -0.02 -0.50 16 14 C 0.11 -1.19 6.28 86.38 0.54 -0.65 16 15 N -0.28 0.24 3.43 -346.85 -1.19 -0.95 16 16 C -0.02 0.05 10.96 83.76 0.92 0.96 16 17 C -0.01 -0.06 6.99 41.05 0.29 0.23 16 18 C -0.02 -0.09 5.88 -20.04 -0.12 -0.21 16 19 C -0.09 -0.74 9.27 22.48 0.21 -0.53 16 20 C -0.13 -0.41 5.39 -19.89 -0.11 -0.52 16 21 C -0.09 -0.30 2.82 71.24 0.20 -0.10 16 22 O -0.56 -2.89 12.77 -148.98 -1.90 -4.80 16 23 Si 0.80 -0.93 29.78 68.60 2.04 1.12 16 24 C -0.12 0.24 8.67 22.31 0.19 0.44 16 25 C -0.11 0.52 10.03 22.24 0.22 0.74 16 26 C -0.10 0.32 9.58 22.48 0.22 0.53 16 27 N -0.31 -4.14 12.16 -49.31 -0.60 -4.74 16 28 N -0.11 -1.02 12.90 37.02 0.48 -0.54 16 29 C -0.11 1.22 7.39 31.12 0.23 1.45 16 30 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 31 H 0.09 0.03 8.14 -2.39 -0.02 0.01 16 32 H 0.06 0.58 5.88 -2.39 -0.01 0.56 16 33 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 34 H 0.10 -0.43 8.14 -2.39 -0.02 -0.45 16 35 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 36 H 0.06 0.68 5.88 -2.39 -0.01 0.67 16 37 H 0.09 0.14 8.14 -2.38 -0.02 0.12 16 38 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 39 H 0.41 -1.36 8.81 -92.71 -0.82 -2.18 16 40 H 0.04 0.26 8.14 -2.38 -0.02 0.24 16 41 H 0.10 -0.31 7.90 -2.38 -0.02 -0.33 16 42 H 0.12 -1.41 7.84 -2.39 -0.02 -1.43 16 43 H 0.15 -2.91 8.06 -2.39 -0.02 -2.93 16 44 H 0.24 -3.39 7.41 -2.91 -0.02 -3.41 16 45 H 0.10 1.37 7.90 -2.91 -0.02 1.35 16 46 H 0.09 0.59 7.96 -2.38 -0.02 0.57 16 47 H 0.39 -1.42 8.70 -74.06 -0.64 -2.07 16 48 H -0.30 -2.05 7.11 99.48 0.71 -1.34 16 49 H -0.28 -0.58 7.11 99.48 0.71 0.13 16 50 H 0.15 -1.00 4.86 -2.91 -0.01 -1.02 16 51 H 0.16 -1.87 8.06 -2.91 -0.02 -1.90 16 52 H 0.16 -1.74 7.12 -2.91 -0.02 -1.76 16 53 H 0.13 -2.08 8.10 -2.38 -0.02 -2.10 16 54 H 0.10 -1.27 8.14 -2.39 -0.02 -1.29 16 Total: 0.00 -33.40 438.74 1.09 -32.31 By element: Atomic # 1 Polarization: -18.25 SS G_CDS: -0.49 Total: -18.73 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: 6.06 Total: 10.54 kcal Atomic # 7 Polarization: -5.46 SS G_CDS: -4.30 Total: -9.76 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: -2.22 Total: -15.47 kcal Atomic # 14 Polarization: -0.93 SS G_CDS: 2.04 Total: 1.12 kcal Total: -33.40 1.09 -32.31 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_274090_15734088_14928536.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.107 kcal (2) G-P(sol) polarization free energy of solvation -33.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds