Wall clock time and date at job start Tue Mar 9 2021 13:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42907 * 114.00025 * 2 1 4 4 C 1.52995 * 112.84833 * 66.01439 * 3 2 1 5 5 F 1.39897 * 109.47588 * 283.56405 * 4 3 2 6 6 F 1.39906 * 109.47211 * 43.56923 * 4 3 2 7 7 F 1.39903 * 109.47284 * 163.56324 * 4 3 2 8 8 C 1.53778 * 113.61249 * 294.81768 * 3 2 1 9 9 C 1.53785 * 87.08270 * 270.79830 * 8 3 2 10 10 H 1.08990 * 113.61335 * 219.93236 * 9 8 3 11 11 C 1.53008 * 113.60969 * 89.11682 * 9 8 3 12 12 N 1.46492 * 109.46729 * 175.00070 * 11 9 8 13 13 C 1.35215 * 125.75140 * 124.99976 * 12 11 9 14 14 C 1.36490 * 106.04662 * 179.97438 * 13 12 11 15 15 C 1.48444 * 126.90883 * 179.97438 * 14 13 12 16 16 C 1.39294 * 120.12012 * 184.72260 * 15 14 13 17 17 C 1.38046 * 119.87498 * 179.79211 * 16 15 14 18 18 C 1.50703 * 119.93553 * 180.21005 * 17 16 15 19 19 O 1.42909 * 109.47095 * 65.27581 * 18 17 16 20 20 Si 1.86301 * 109.46903 * 185.27594 * 18 17 16 21 21 C 1.38292 * 120.12091 * 0.48191 * 17 16 15 22 22 C 1.38337 * 120.24213 * 359.75105 * 21 17 16 23 23 C 1.38002 * 120.11764 * 0.02562 * 22 21 17 24 24 N 1.34509 * 106.18863 * 0.24315 * 14 13 12 25 25 N 1.28613 * 108.78222 * 359.59378 * 24 14 13 26 26 C 1.53780 * 87.08115 * 334.57096 * 9 8 3 27 27 H 1.09000 * 109.47255 * 302.48696 * 1 2 3 28 28 H 1.09009 * 109.47102 * 62.48524 * 1 2 3 29 29 H 1.08999 * 109.47309 * 182.48146 * 1 2 3 30 30 H 1.09003 * 113.61170 * 156.24966 * 8 3 2 31 31 H 1.09001 * 113.69507 * 25.36038 * 8 3 2 32 32 H 1.09002 * 109.46899 * 54.99997 * 11 9 8 33 33 H 1.08996 * 109.47145 * 295.00091 * 11 9 8 34 34 H 1.08000 * 126.97799 * 359.96097 * 13 12 11 35 35 H 1.07999 * 120.05619 * 0.02562 * 16 15 14 36 36 H 1.08994 * 109.47159 * 305.27713 * 18 17 16 37 37 H 0.96694 * 113.99552 * 59.99752 * 19 18 17 38 38 H 1.48497 * 110.00071 * 179.97438 * 20 18 17 39 39 H 1.48500 * 109.99863 * 301.31954 * 20 18 17 40 40 H 1.08004 * 119.87784 * 179.76660 * 21 17 16 41 41 H 1.07993 * 119.94632 * 179.97438 * 22 21 17 42 42 H 1.07997 * 120.06403 * 179.97438 * 23 22 21 43 43 H 1.08996 * 113.61770 * 139.97812 * 26 9 8 44 44 H 1.09005 * 113.61107 * 270.88331 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7283 2.0813 1.2882 5 9 0.4116 2.5538 1.2694 6 9 1.9051 1.2368 2.3894 7 9 2.6104 3.1630 1.3837 8 6 1.7205 2.1088 -1.2789 9 6 2.9973 1.4845 -1.8662 10 1 3.5925 2.1813 -2.4562 11 6 2.7554 0.1546 -2.5832 12 7 4.0015 -0.2975 -3.2068 13 6 4.5935 -1.4971 -3.0098 14 6 5.7197 -1.4931 -3.7809 15 6 6.7147 -2.5870 -3.9114 16 6 7.8695 -2.3952 -4.6663 17 6 8.7935 -3.4144 -4.7807 18 6 10.0456 -3.2067 -5.5932 19 8 10.8541 -2.2039 -4.9744 20 14 10.9992 -4.8046 -5.6837 21 6 8.5694 -4.6276 -4.1558 22 6 7.4219 -4.8251 -3.4088 23 6 6.4938 -3.8114 -3.2840 24 7 5.7500 -0.2964 -4.3943 25 7 4.7167 0.3796 -4.0346 26 6 3.4899 1.3230 -0.4184 27 1 -0.3634 0.5520 0.8668 28 1 -0.3634 0.4748 -0.9115 29 1 -0.3634 -1.0267 0.0445 30 1 1.7858 3.1880 -1.1408 31 1 0.8088 1.8021 -1.7917 32 1 1.9929 0.2890 -3.3505 33 1 2.4184 -0.5906 -1.8627 34 1 4.2460 -2.2961 -2.3718 35 1 8.0434 -1.4495 -5.1580 36 1 9.7767 -2.8866 -6.5997 37 1 11.1310 -2.4223 -4.0741 38 1 12.2361 -4.6133 -6.4829 39 1 11.3443 -5.2683 -4.3159 40 1 9.2931 -5.4236 -4.2510 41 1 7.2516 -5.7745 -2.9232 42 1 5.5981 -3.9667 -2.7010 43 1 4.0066 0.3809 -0.2354 44 1 4.0390 2.1875 -0.0451 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_274090_17321614_14928536.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:35:13 Heat of formation + Delta-G solvation = -58.748223 kcal Electronic energy + Delta-G solvation = -33598.938145 eV Core-core repulsion = 28492.994552 eV Total energy + Delta-G solvation = -5105.943593 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.129 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -51.28924 -48.83019 -48.75353 -44.29237 -41.47871 -40.44523 -37.80141 -37.47135 -35.43494 -33.72750 -32.27393 -30.92463 -30.19034 -28.23773 -27.70823 -26.83365 -26.75453 -24.91565 -23.95036 -23.36827 -22.10950 -21.63854 -20.51399 -19.84055 -19.57580 -19.33442 -18.73946 -18.15516 -17.52090 -17.27693 -17.20901 -16.65817 -16.46611 -16.25200 -15.99704 -15.75669 -15.71200 -15.63348 -15.57841 -15.31941 -15.16272 -14.93762 -14.88539 -14.82082 -14.66842 -14.52208 -14.20452 -14.06449 -13.68047 -13.31556 -13.14838 -13.04080 -12.99830 -12.71945 -12.42888 -12.40251 -12.21464 -12.02167 -11.86899 -11.71251 -11.55499 -11.31484 -10.87417 -10.82941 -10.59671 -9.81528 -9.27382 -4.90366 -0.05402 0.38590 0.63989 1.30511 1.33718 1.50250 1.61321 1.63389 1.97578 2.02757 2.51604 2.57767 2.81951 2.86143 3.08946 3.21803 3.26356 3.35569 3.40945 3.52625 3.64831 3.79793 3.93362 4.02951 4.13481 4.16403 4.20198 4.29449 4.33869 4.35287 4.37319 4.43523 4.45751 4.53389 4.61583 4.66006 4.69793 4.79450 4.81396 4.85302 4.93544 5.05730 5.10220 5.48840 5.52477 5.55908 5.59023 5.67134 5.98871 6.48874 7.41948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 O -0.340 6.340 3 C 0.044 3.956 4 C 0.431 3.569 5 F -0.183 7.183 6 F -0.187 7.187 7 F -0.180 7.180 8 C -0.131 4.131 9 C -0.112 4.112 10 H 0.101 0.899 11 C 0.122 3.878 12 N -0.277 5.277 13 C -0.016 4.016 14 C -0.005 4.005 15 C -0.020 4.020 16 C -0.090 4.090 17 C -0.122 4.122 18 C -0.094 4.094 19 O -0.552 6.552 20 Si 0.783 3.217 21 C -0.117 4.117 22 C -0.108 4.108 23 C -0.096 4.096 24 N -0.299 5.299 25 N -0.108 5.108 26 C -0.116 4.116 27 H 0.042 0.958 28 H 0.074 0.926 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.123 0.877 33 H 0.144 0.856 34 H 0.235 0.765 35 H 0.106 0.894 36 H 0.114 0.886 37 H 0.385 0.615 38 H -0.307 1.307 39 H -0.273 1.273 40 H 0.147 0.853 41 H 0.162 0.838 42 H 0.157 0.843 43 H 0.094 0.906 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.991 -6.445 1.956 9.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 O -0.258 6.258 3 C 0.002 3.998 4 C 0.376 3.624 5 F -0.165 7.165 6 F -0.168 7.168 7 F -0.162 7.162 8 C -0.168 4.168 9 C -0.132 4.132 10 H 0.119 0.881 11 C 0.003 3.997 12 N -0.069 5.069 13 C -0.167 4.167 14 C -0.143 4.143 15 C -0.022 4.022 16 C -0.109 4.109 17 C -0.122 4.122 18 C -0.201 4.201 19 O -0.360 6.360 20 Si 0.687 3.313 21 C -0.134 4.134 22 C -0.125 4.125 23 C -0.115 4.115 24 N -0.165 5.165 25 N -0.087 5.087 26 C -0.153 4.153 27 H 0.061 0.939 28 H 0.093 0.907 29 H 0.136 0.864 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.141 0.859 33 H 0.161 0.839 34 H 0.251 0.749 35 H 0.124 0.876 36 H 0.132 0.868 37 H 0.234 0.766 38 H -0.236 1.236 39 H -0.199 1.199 40 H 0.164 0.836 41 H 0.180 0.820 42 H 0.175 0.825 43 H 0.112 0.888 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.195 -5.300 0.849 8.197 hybrid contribution 0.012 0.844 1.819 2.005 sum -6.183 -4.456 2.668 8.074 Atomic orbital electron populations 1.23355 0.78353 1.05569 1.02086 1.88025 1.22287 1.21645 1.93822 1.24039 0.99793 0.86584 0.89402 1.21567 0.74119 0.78698 0.87988 1.93183 1.37045 1.89393 1.96843 1.93195 1.95003 1.70973 1.57666 1.93176 1.69028 1.57353 1.96623 1.23602 0.99652 1.01412 0.92167 1.22388 0.98695 0.96702 0.95373 0.88106 1.22478 0.80468 0.97932 0.98782 1.47520 1.19672 1.11033 1.28673 1.24138 0.95311 0.92181 1.05116 1.20720 0.97827 0.94472 1.01267 1.17858 0.92661 0.92017 0.99695 1.20993 0.93195 0.98741 0.97984 1.20224 0.96838 0.94741 1.00386 1.25428 0.92528 1.03749 0.98442 1.86585 1.70271 1.45044 1.34134 0.93939 0.79216 0.77922 0.80189 1.21390 0.98954 0.96065 0.97036 1.21409 0.92886 1.00161 0.98082 1.21460 1.00683 0.90905 0.98456 1.75276 1.14188 1.04818 1.22260 1.78165 1.01055 1.21181 1.08312 1.23314 0.91180 1.05611 0.95234 0.93933 0.90713 0.86396 0.86505 0.86409 0.85869 0.83868 0.74882 0.87588 0.86814 0.76565 1.23568 1.19945 0.83610 0.82009 0.82541 0.88752 0.86679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 10.43 113.37 1.18 1.17 16 2 O -0.34 2.12 8.36 -148.98 -1.25 0.87 16 3 C 0.04 -0.23 0.85 -10.27 -0.01 -0.24 16 4 C 0.43 -0.06 2.51 71.98 0.18 0.12 16 5 F -0.18 -0.06 15.24 44.97 0.69 0.62 16 6 F -0.19 -0.70 17.09 44.97 0.77 0.07 16 7 F -0.18 -0.26 15.82 44.97 0.71 0.45 16 8 C -0.13 1.17 6.52 31.12 0.20 1.37 16 9 C -0.11 0.77 4.02 -10.26 -0.04 0.73 16 10 H 0.10 -0.35 7.90 -2.39 -0.02 -0.37 16 11 C 0.12 -0.98 6.03 86.38 0.52 -0.46 16 12 N -0.28 0.08 3.43 -346.87 -1.19 -1.11 16 13 C -0.02 0.03 10.96 83.76 0.92 0.95 16 14 C -0.01 -0.03 6.98 41.05 0.29 0.25 16 15 C -0.02 -0.08 5.88 -20.04 -0.12 -0.20 16 16 C -0.09 -0.63 9.35 22.48 0.21 -0.42 16 17 C -0.12 -0.33 5.34 -19.90 -0.11 -0.44 16 18 C -0.09 -0.25 2.80 71.24 0.20 -0.05 16 19 O -0.55 -3.65 12.84 -148.98 -1.91 -5.56 16 20 Si 0.78 -0.96 29.88 68.60 2.05 1.09 16 21 C -0.12 0.23 8.66 22.31 0.19 0.42 16 22 C -0.11 0.47 10.03 22.24 0.22 0.70 16 23 C -0.10 0.27 9.58 22.48 0.22 0.49 16 24 N -0.30 -3.64 12.17 -49.31 -0.60 -4.24 16 25 N -0.11 -0.91 12.73 37.02 0.47 -0.44 16 26 C -0.12 0.60 6.89 31.12 0.21 0.82 16 27 H 0.04 -0.25 6.25 -2.39 -0.01 -0.26 16 28 H 0.07 -0.95 6.76 -2.38 -0.02 -0.97 16 29 H 0.12 -1.41 8.14 -2.39 -0.02 -1.43 16 30 H 0.12 -1.05 8.06 -2.39 -0.02 -1.07 16 31 H 0.12 -1.51 6.70 -2.39 -0.02 -1.52 16 32 H 0.12 -1.34 8.14 -2.39 -0.02 -1.36 16 33 H 0.14 -1.67 6.05 -2.39 -0.01 -1.68 16 34 H 0.23 -2.71 7.43 -2.91 -0.02 -2.73 16 35 H 0.11 1.25 7.91 -2.91 -0.02 1.23 16 36 H 0.11 0.30 7.96 -2.39 -0.02 0.28 16 37 H 0.39 0.11 8.70 -74.06 -0.64 -0.53 16 38 H -0.31 -2.14 7.11 99.48 0.71 -1.43 16 39 H -0.27 -0.25 7.00 99.48 0.70 0.45 16 40 H 0.15 -0.89 4.82 -2.91 -0.01 -0.90 16 41 H 0.16 -1.70 8.06 -2.91 -0.02 -1.72 16 42 H 0.16 -1.52 7.14 -2.91 -0.02 -1.54 16 43 H 0.09 -0.47 8.10 -2.39 -0.02 -0.48 16 44 H 0.11 -0.51 7.01 -2.38 -0.02 -0.53 16 Total: 0.00 -24.11 373.64 4.47 -19.64 By element: Atomic # 1 Polarization: -17.04 SS G_CDS: 0.46 Total: -16.58 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: 4.27 Total: 5.19 kcal Atomic # 7 Polarization: -4.47 SS G_CDS: -1.32 Total: -5.79 kcal Atomic # 8 Polarization: -1.53 SS G_CDS: -3.16 Total: -4.69 kcal Atomic # 9 Polarization: -1.02 SS G_CDS: 2.17 Total: 1.14 kcal Atomic # 14 Polarization: -0.96 SS G_CDS: 2.05 Total: 1.09 kcal Total: -24.11 4.47 -19.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_274090_17321614_14928536.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.113 kcal (2) G-P(sol) polarization free energy of solvation -24.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds