Wall clock time and date at job start Tue Mar 9 2021 13:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46865 * 2 1 4 4 C 1.53002 * 109.47458 * 119.99823 * 2 1 3 5 5 C 1.53000 * 109.47085 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47104 * 299.99889 * 5 4 2 7 7 H 1.08990 * 109.47430 * 300.00262 * 6 5 4 8 8 N 1.46499 * 109.46833 * 179.97438 * 6 5 4 9 9 C 1.39005 * 120.00007 * 155.00010 * 8 6 5 10 10 N 1.32393 * 119.70921 * 179.72800 * 9 8 6 11 11 C 1.31972 * 121.62376 * 179.71508 * 10 9 8 12 12 C 1.38023 * 120.85708 * 0.56631 * 11 10 9 13 13 C 1.50700 * 120.33780 * 179.74805 * 12 11 10 14 14 O 1.42895 * 109.47120 * 244.97630 * 13 12 11 15 15 Si 1.86297 * 109.47063 * 4.97806 * 13 12 11 16 16 C 1.38888 * 119.32550 * 359.72463 * 12 11 10 17 17 C 1.38292 * 118.50598 * 359.97438 * 16 12 11 18 18 C 1.52998 * 109.47053 * 60.00471 * 6 5 4 19 19 C 1.53000 * 109.47154 * 299.99761 * 18 6 5 20 20 H 1.09006 * 109.46987 * 299.99911 * 1 2 3 21 21 H 1.09002 * 109.47099 * 59.99861 * 1 2 3 22 22 H 1.08996 * 109.46870 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.46559 * 59.99875 * 4 2 1 24 24 H 1.09005 * 109.47082 * 300.00640 * 4 2 1 25 25 H 1.09002 * 109.46726 * 180.02562 * 5 4 2 26 26 H 1.08995 * 109.46824 * 60.00579 * 5 4 2 27 27 H 0.97005 * 120.00261 * 335.00546 * 8 6 5 28 28 H 1.08002 * 119.57244 * 180.31425 * 11 10 9 29 29 H 1.08999 * 109.47021 * 124.97638 * 13 12 11 30 30 H 0.96695 * 114.00109 * 179.97438 * 14 13 12 31 31 H 1.48506 * 109.99955 * 300.00328 * 15 13 12 32 32 H 1.48506 * 110.00242 * 61.31781 * 15 13 12 33 33 H 1.08000 * 120.74354 * 179.97438 * 16 12 11 34 34 H 1.08003 * 120.44727 * 180.02562 * 17 16 12 35 35 H 1.09007 * 109.47248 * 59.99543 * 18 6 5 36 36 H 1.08997 * 109.47450 * 179.97438 * 18 6 5 37 37 H 1.09002 * 109.47232 * 300.00298 * 19 18 6 38 38 H 1.09002 * 109.47099 * 179.97438 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5701 -0.7206 1.2495 6 6 4.0806 -1.4415 0.0003 7 1 3.7177 -2.4692 0.0000 8 7 5.5455 -1.4404 0.0003 9 6 6.2413 -2.4259 -0.6902 10 7 7.5652 -2.4163 -0.6908 11 6 8.2636 -3.3365 -1.3289 12 6 7.6330 -4.3423 -2.0329 13 6 8.4420 -5.3838 -2.7620 14 8 8.2169 -5.2636 -4.1680 15 14 10.2517 -5.1307 -2.3990 16 6 6.2450 -4.3850 -2.0621 17 6 5.5402 -3.4109 -1.3789 18 6 3.5706 -0.7203 -1.2489 19 6 2.0406 -0.7208 -1.2493 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.6767 -1.7488 1.2492 24 1 1.6767 -0.2074 2.1393 25 1 3.9334 -1.2348 2.1393 26 1 3.9329 0.3072 1.2498 27 1 6.0301 -0.7519 0.4821 28 1 9.3427 -3.2997 -1.3033 29 1 8.1402 -6.3769 -2.4293 30 1 8.7075 -5.9041 -4.7010 31 1 10.6757 -3.7801 -2.8478 32 1 10.5042 -5.2847 -0.9436 33 1 5.7279 -5.1616 -2.6061 34 1 4.4602 -3.4144 -1.3803 35 1 3.9335 0.3076 -1.2487 36 1 3.9346 -1.2335 -2.1389 37 1 1.6776 -1.7486 -1.2494 38 1 1.6772 -0.2066 -2.1390 There are 46 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 46 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_4279156_13915762.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:35:45 Heat of formation + Delta-G solvation = -1.199503 kcal Electronic energy + Delta-G solvation = -18286.797532 eV Core-core repulsion = 15516.035509 eV Total energy + Delta-G solvation = -2770.762023 eV No. of doubly occupied orbitals = 46 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.62675 -40.00908 -37.86557 -36.42705 -33.77288 -32.77446 -31.79716 -30.93982 -27.26406 -25.71230 -25.04730 -23.63075 -22.80956 -21.86137 -20.82955 -18.76746 -18.48666 -18.15361 -16.77316 -16.46731 -16.08980 -15.75026 -15.23973 -15.22134 -15.14657 -15.07889 -14.41608 -14.16286 -13.98936 -13.87988 -13.59348 -13.23347 -13.15747 -12.67643 -12.43352 -12.16492 -12.09917 -11.98071 -11.58967 -11.46105 -11.23529 -10.95741 -10.85717 -10.72543 -10.19426 -8.81274 -4.96530 0.04261 0.27885 1.32106 1.64100 1.96329 1.99187 2.65772 3.33932 3.49568 3.59369 3.67813 3.75909 3.82808 3.93235 4.03261 4.05436 4.12743 4.26251 4.29093 4.41387 4.44395 4.48966 4.53316 4.63943 4.74020 4.82104 4.85988 4.93261 4.95063 5.04761 5.10581 5.15085 5.17960 5.20668 5.34706 5.38541 5.42038 5.53258 5.92828 6.41492 6.94797 6.99477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 H 0.066 0.934 4 C -0.107 4.107 5 C -0.121 4.121 6 C 0.157 3.843 7 H 0.087 0.913 8 N -0.717 5.717 9 C 0.395 3.605 10 N -0.571 5.571 11 C 0.126 3.874 12 C -0.203 4.203 13 C -0.059 4.059 14 O -0.565 6.565 15 Si 0.769 3.231 16 C -0.008 4.008 17 C -0.237 4.237 18 C -0.130 4.130 19 C -0.109 4.109 20 H 0.056 0.944 21 H 0.054 0.946 22 H 0.058 0.942 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.404 0.596 28 H 0.140 0.860 29 H 0.097 0.903 30 H 0.403 0.597 31 H -0.300 1.300 32 H -0.291 1.291 33 H 0.159 0.841 34 H 0.155 0.845 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.608 -3.706 -0.793 4.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.112 4.112 3 H 0.085 0.915 4 C -0.145 4.145 5 C -0.159 4.159 6 C 0.052 3.948 7 H 0.105 0.895 8 N -0.347 5.347 9 C 0.158 3.842 10 N -0.289 5.289 11 C -0.031 4.031 12 C -0.208 4.208 13 C -0.170 4.170 14 O -0.375 6.375 15 Si 0.676 3.324 16 C -0.034 4.034 17 C -0.261 4.261 18 C -0.169 4.169 19 C -0.147 4.147 20 H 0.075 0.925 21 H 0.073 0.927 22 H 0.077 0.923 23 H 0.089 0.911 24 H 0.091 0.909 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.240 0.760 28 H 0.157 0.843 29 H 0.115 0.885 30 H 0.254 0.746 31 H -0.228 1.228 32 H -0.218 1.218 33 H 0.177 0.823 34 H 0.173 0.827 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.188 -2.120 0.281 3.060 hybrid contribution -0.423 0.118 -0.028 0.440 sum -2.612 -2.002 0.252 3.300 Atomic orbital electron populations 1.21826 0.94755 1.02127 1.01878 1.21165 0.95839 0.99512 0.94675 0.91543 1.21535 0.93425 1.01484 0.98104 1.21748 0.96828 1.00967 0.96358 1.21143 0.77119 1.00668 0.95846 0.89526 1.44767 1.05931 1.29223 1.54823 1.18675 0.87723 0.88444 0.89344 1.67065 1.07555 1.28513 1.25757 1.22144 0.98674 0.89461 0.92783 1.20355 0.95711 1.00167 1.04583 1.24497 1.09274 0.99042 0.84149 1.86441 1.73205 1.62244 1.15622 0.94517 0.76231 0.82159 0.79462 1.21503 0.92636 0.96523 0.92699 1.21747 1.02062 0.97802 1.04533 1.21991 0.96557 1.00853 0.97540 1.21549 0.93635 1.01425 0.98058 0.92495 0.92714 0.92336 0.91147 0.90875 0.91098 0.91205 0.76022 0.84302 0.88524 0.74557 1.22797 1.21827 0.82339 0.82743 0.92177 0.92463 0.91086 0.91570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.51 9.19 71.98 0.66 1.17 16 2 C -0.09 0.31 2.72 -10.79 -0.03 0.28 16 3 H 0.07 -0.14 8.14 -2.38 -0.02 -0.16 16 4 C -0.11 0.44 5.20 30.59 0.16 0.60 16 5 C -0.12 0.37 5.39 30.59 0.16 0.54 16 6 C 0.16 -0.18 2.14 44.99 0.10 -0.08 16 7 H 0.09 -0.16 6.45 -2.39 -0.02 -0.17 16 8 N -0.72 -2.49 5.24 -324.56 -1.70 -4.19 16 9 C 0.39 3.27 7.63 133.07 1.02 4.29 16 10 N -0.57 -7.29 10.39 -193.26 -2.01 -9.30 16 11 C 0.13 1.39 9.84 84.62 0.83 2.22 16 12 C -0.20 -1.41 5.39 -19.76 -0.11 -1.51 16 13 C -0.06 -0.02 2.81 71.24 0.20 0.18 16 14 O -0.57 -0.07 12.82 -148.98 -1.91 -1.98 16 15 Si 0.77 -0.33 29.88 68.60 2.05 1.72 16 16 C -0.01 -0.04 9.84 22.44 0.22 0.18 16 17 C -0.24 -1.14 8.83 22.50 0.20 -0.94 16 18 C -0.13 0.11 5.42 30.59 0.17 0.27 16 19 C -0.11 0.32 5.21 30.59 0.16 0.48 16 20 H 0.06 -0.19 8.14 -2.38 -0.02 -0.21 16 21 H 0.05 -0.16 8.14 -2.39 -0.02 -0.18 16 22 H 0.06 -0.22 8.14 -2.39 -0.02 -0.24 16 23 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 24 H 0.07 -0.32 8.14 -2.38 -0.02 -0.34 16 25 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 26 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 27 H 0.40 1.27 8.73 -92.70 -0.81 0.46 16 28 H 0.14 1.43 4.87 -2.91 -0.01 1.41 16 29 H 0.10 -0.44 7.96 -2.39 -0.02 -0.46 16 30 H 0.40 -4.29 8.74 -74.06 -0.65 -4.94 16 31 H -0.30 -2.32 7.05 99.48 0.70 -1.62 16 32 H -0.29 -1.60 7.11 99.48 0.71 -0.89 16 33 H 0.16 -0.07 8.06 -2.91 -0.02 -0.09 16 34 H 0.16 0.00 6.08 -2.91 -0.02 -0.01 16 35 H 0.06 0.05 8.14 -2.38 -0.02 0.03 16 36 H 0.06 0.08 7.66 -2.39 -0.02 0.06 16 37 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 38 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 Total: 0.00 -14.43 300.21 -0.20 -14.63 By element: Atomic # 1 Polarization: -8.21 SS G_CDS: -0.37 Total: -8.58 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: 3.74 Total: 7.69 kcal Atomic # 7 Polarization: -9.78 SS G_CDS: -3.71 Total: -13.49 kcal Atomic # 8 Polarization: -0.07 SS G_CDS: -1.91 Total: -1.98 kcal Atomic # 14 Polarization: -0.33 SS G_CDS: 2.05 Total: 1.72 kcal Total: -14.43 -0.20 -14.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_4279156_13915762.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.435 kcal (2) G-P(sol) polarization free energy of solvation -14.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds