Wall clock time and date at job start Tue Mar 9 2021 13:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33332 * 125.94954 * 2 1 4 4 C 1.50699 * 122.71213 * 0.02562 * 3 2 1 5 5 O 1.42900 * 109.46763 * 330.00371 * 4 3 2 6 6 Si 1.86301 * 109.47112 * 210.00203 * 4 3 2 7 7 N 1.32115 * 114.57580 * 180.02562 * 3 2 1 8 8 C 1.29688 * 116.87094 * 359.97438 * 7 3 2 9 9 N 1.38609 * 124.95101 * 179.97438 * 8 7 3 10 10 C 1.46501 * 119.99947 * 179.97438 * 9 8 7 11 11 H 1.08996 * 109.47594 * 325.00623 * 10 9 8 12 12 C 1.53002 * 109.47151 * 85.00454 * 10 9 8 13 13 C 1.53008 * 109.46881 * 59.99828 * 12 10 9 14 14 C 1.53002 * 109.46714 * 60.00177 * 13 12 10 15 15 H 1.09000 * 109.47154 * 60.00522 * 14 13 12 16 16 C 1.52998 * 109.46625 * 179.97438 * 14 13 12 17 17 O 1.42903 * 109.47533 * 294.99970 * 16 14 13 18 18 C 1.52997 * 109.47562 * 299.99794 * 14 13 12 19 19 C 1.52995 * 109.47384 * 205.00523 * 10 9 8 20 20 S 1.70966 * 110.09929 * 359.73162 * 8 7 3 21 21 H 1.09002 * 109.47152 * 90.00172 * 1 2 3 22 22 H 1.09001 * 109.46980 * 330.00272 * 1 2 3 23 23 H 1.09004 * 109.47113 * 210.00253 * 1 2 3 24 24 H 1.08995 * 109.47264 * 89.99891 * 4 3 2 25 25 H 0.96708 * 113.99587 * 180.02562 * 5 4 3 26 26 H 1.48501 * 109.99858 * 298.68363 * 6 4 3 27 27 H 1.48500 * 109.99690 * 59.99835 * 6 4 3 28 28 H 0.96999 * 120.00058 * 0.02562 * 9 8 7 29 29 H 1.08990 * 109.47732 * 179.97438 * 12 10 9 30 30 H 1.08999 * 109.46955 * 300.00234 * 12 10 9 31 31 H 1.09000 * 109.47032 * 300.00000 * 13 12 10 32 32 H 1.08995 * 109.46716 * 179.97438 * 13 12 10 33 33 H 1.08998 * 109.47698 * 55.00065 * 16 14 13 34 34 H 1.09001 * 109.46927 * 175.00238 * 16 14 13 35 35 H 0.96701 * 114.00530 * 180.02562 * 17 16 14 36 36 H 1.09000 * 109.46970 * 300.00659 * 18 14 13 37 37 H 1.08994 * 109.47550 * 180.02562 * 18 14 13 38 38 H 1.09004 * 109.47263 * 59.99785 * 19 10 9 39 39 H 1.09000 * 109.47584 * 180.02562 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0794 0.0000 4 6 1.7414 2.4831 0.0006 5 8 0.4810 2.5022 -0.6725 6 14 2.9320 3.6152 -0.8779 7 7 3.5850 0.8188 -0.0005 8 6 3.9315 -0.4309 -0.0005 9 7 5.2385 -0.8925 -0.0015 10 6 5.5066 -2.3328 -0.0007 11 1 4.7461 -2.8437 0.5897 12 6 5.4750 -2.8582 -1.4374 13 6 6.5426 -2.1411 -2.2663 14 6 7.9217 -2.4028 -1.6577 15 1 8.1212 -3.4744 -1.6572 16 6 8.9893 -1.6862 -2.4869 17 8 9.0390 -2.2576 -3.7958 18 6 7.9534 -1.8775 -0.2211 19 6 6.8857 -2.5946 0.6078 20 16 2.5413 -1.4260 0.0078 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 0.8900 0.5138 23 1 -0.3633 -0.8900 0.5139 24 1 1.6096 2.8212 1.0283 25 1 0.0688 3.3762 -0.7107 26 1 4.2369 3.6285 -0.1692 27 1 3.1202 3.1648 -2.2803 28 1 5.9756 -0.2620 -0.0019 29 1 5.6749 -3.9296 -1.4369 30 1 4.4924 -2.6717 -1.8708 31 1 6.3430 -1.0695 -2.2668 32 1 6.5203 -2.5157 -3.2896 33 1 8.7412 -0.6275 -2.5620 34 1 9.9602 -1.7985 -2.0044 35 1 9.6959 -1.8514 -4.3777 36 1 7.7538 -0.8059 -0.2216 37 1 8.9360 -2.0635 0.2123 38 1 6.9083 -2.2202 1.6313 39 1 7.0854 -3.6661 0.6079 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_7044652_15704122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:37:04 Heat of formation + Delta-G solvation = -44.110924 kcal Electronic energy + Delta-G solvation = -21104.832076 eV Core-core repulsion = 17947.141709 eV Total energy + Delta-G solvation = -3157.690367 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 285.119 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.27681 -40.48867 -38.04302 -37.49665 -35.57287 -33.09326 -31.94841 -31.38838 -29.16241 -26.51407 -25.64420 -24.55727 -23.71724 -22.42080 -20.80275 -20.46740 -19.18395 -18.32895 -18.03491 -17.47906 -16.89337 -16.58500 -16.24841 -15.87259 -15.65810 -15.49077 -15.07725 -14.79076 -14.32314 -14.10808 -14.03126 -13.93611 -13.58900 -13.48056 -13.29788 -13.09360 -12.93045 -12.61430 -12.36914 -12.29243 -11.89683 -11.70782 -11.53939 -11.27018 -11.03449 -10.90449 -10.78338 -10.37514 -10.08756 -8.70905 -4.99086 -0.10848 0.03871 0.64846 1.25528 1.65778 1.75266 1.83626 2.18744 3.10697 3.19076 3.52739 3.56926 3.73515 3.90945 3.94736 4.08197 4.14382 4.22218 4.29033 4.30135 4.37299 4.39170 4.40639 4.52940 4.57355 4.66929 4.77747 4.83342 4.88124 4.92217 4.98585 5.04331 5.06365 5.12700 5.26542 5.30654 5.34962 5.58055 6.17255 6.76409 6.78686 6.93547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C -0.246 4.246 3 C 0.073 3.927 4 C -0.034 4.034 5 O -0.552 6.552 6 Si 0.810 3.190 7 N -0.587 5.587 8 C 0.310 3.690 9 N -0.681 5.681 10 C 0.150 3.850 11 H 0.088 0.912 12 C -0.135 4.135 13 C -0.103 4.103 14 C -0.085 4.085 15 H 0.080 0.920 16 C 0.075 3.925 17 O -0.594 6.594 18 C -0.112 4.112 19 C -0.117 4.117 20 S 0.121 5.879 21 H 0.069 0.931 22 H 0.094 0.906 23 H 0.065 0.935 24 H 0.102 0.898 25 H 0.408 0.592 26 H -0.303 1.303 27 H -0.325 1.325 28 H 0.410 0.590 29 H 0.094 0.906 30 H 0.054 0.946 31 H 0.044 0.956 32 H 0.055 0.945 33 H 0.042 0.958 34 H 0.059 0.941 35 H 0.395 0.605 36 H 0.058 0.942 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.374 0.669 2.499 2.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.369 4.369 3 C -0.055 4.055 4 C -0.147 4.147 5 O -0.362 6.362 6 Si 0.719 3.281 7 N -0.316 5.316 8 C -0.061 4.061 9 N -0.322 5.322 10 C 0.046 3.954 11 H 0.106 0.894 12 C -0.174 4.174 13 C -0.141 4.141 14 C -0.103 4.103 15 H 0.099 0.901 16 C -0.003 4.003 17 O -0.403 6.403 18 C -0.150 4.150 19 C -0.154 4.154 20 S 0.370 5.630 21 H 0.088 0.912 22 H 0.113 0.887 23 H 0.084 0.916 24 H 0.119 0.881 25 H 0.260 0.740 26 H -0.231 1.231 27 H -0.255 1.255 28 H 0.249 0.751 29 H 0.112 0.888 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.244 0.756 36 H 0.077 0.923 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.055 -1.145 2.300 2.777 hybrid contribution 0.714 0.927 -0.339 1.218 sum 1.769 -0.218 1.961 2.650 Atomic orbital electron populations 1.20114 0.84957 1.03210 1.02794 1.25524 1.02604 0.92737 1.16026 1.19456 0.86496 0.96707 1.02848 1.23962 0.93554 0.94519 1.02630 1.86428 1.32907 1.37902 1.78930 0.95436 0.76245 0.82650 0.73778 1.65771 1.18059 1.18066 1.29748 1.23550 0.93136 0.91256 0.98153 1.44334 1.00730 1.07957 1.79199 1.21308 0.99492 0.77813 0.96789 0.89420 1.22050 0.98983 1.01515 0.94868 1.21373 0.94227 0.99545 0.98926 1.21160 0.93732 1.01106 0.94317 0.90139 1.22308 0.98707 0.95947 0.83291 1.86429 1.64328 1.64380 1.25133 1.21504 1.00263 0.99712 0.93497 1.21771 0.91125 1.03159 0.99388 1.83731 0.95597 1.09768 1.73919 0.91221 0.88708 0.91614 0.88079 0.74016 1.23131 1.25490 0.75110 0.88798 0.92735 0.93704 0.92654 0.94000 0.92229 0.75564 0.92310 0.89570 0.89965 0.88009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.18 8.96 71.24 0.64 0.45 16 2 C -0.25 -2.08 6.50 24.58 0.16 -1.92 16 3 C 0.07 0.77 5.95 41.41 0.25 1.02 16 4 C -0.03 -0.12 2.82 71.24 0.20 0.08 16 5 O -0.55 0.12 9.86 -148.98 -1.47 -1.35 16 6 Si 0.81 3.57 32.08 68.60 2.20 5.77 16 7 N -0.59 -7.62 8.95 -189.86 -1.70 -9.32 16 8 C 0.31 2.72 8.22 179.32 1.47 4.19 16 9 N -0.68 -2.29 4.38 -330.41 -1.45 -3.74 16 10 C 0.15 -0.22 2.73 44.99 0.12 -0.10 16 11 H 0.09 -0.18 7.25 -2.39 -0.02 -0.20 16 12 C -0.14 0.00 5.62 30.60 0.17 0.18 16 13 C -0.10 -0.23 4.94 30.60 0.15 -0.08 16 14 C -0.08 0.09 2.43 -10.79 -0.03 0.07 16 15 H 0.08 -0.05 8.14 -2.39 -0.02 -0.07 16 16 C 0.08 -0.04 6.43 71.98 0.46 0.42 16 17 O -0.59 -1.43 13.19 -148.98 -1.97 -3.40 16 18 C -0.11 0.50 5.03 30.60 0.15 0.65 16 19 C -0.12 0.62 5.61 30.59 0.17 0.80 16 20 S 0.12 0.73 21.70 -56.49 -1.23 -0.49 16 21 H 0.07 0.28 8.14 -2.39 -0.02 0.26 16 22 H 0.09 0.19 6.61 -2.39 -0.02 0.17 16 23 H 0.07 0.09 8.14 -2.38 -0.02 0.07 16 24 H 0.10 -0.08 7.96 -2.39 -0.02 -0.10 16 25 H 0.41 -4.61 8.74 -74.05 -0.65 -5.26 16 26 H -0.30 -3.78 7.11 99.48 0.71 -3.07 16 27 H -0.33 -4.74 7.11 99.48 0.71 -4.03 16 28 H 0.41 1.24 6.99 -92.71 -0.65 0.59 16 29 H 0.09 -0.25 8.14 -2.39 -0.02 -0.27 16 30 H 0.05 0.16 8.06 -2.39 -0.02 0.14 16 31 H 0.04 0.24 7.60 -2.39 -0.02 0.22 16 32 H 0.05 0.32 7.82 -2.39 -0.02 0.30 16 33 H 0.04 -0.01 8.14 -2.39 -0.02 -0.03 16 34 H 0.06 -0.19 8.14 -2.39 -0.02 -0.21 16 35 H 0.39 -2.17 9.12 -74.06 -0.68 -2.84 16 36 H 0.06 -0.19 6.51 -2.39 -0.02 -0.21 16 37 H 0.09 -0.55 8.14 -2.39 -0.02 -0.57 16 38 H 0.08 -0.47 8.14 -2.38 -0.02 -0.49 16 39 H 0.10 -0.78 8.14 -2.39 -0.02 -0.80 16 Total: 0.00 -20.65 319.56 -2.54 -23.18 By element: Atomic # 1 Polarization: -15.55 SS G_CDS: -0.86 Total: -16.40 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: 3.93 Total: 5.75 kcal Atomic # 7 Polarization: -9.91 SS G_CDS: -3.15 Total: -13.06 kcal Atomic # 8 Polarization: -1.32 SS G_CDS: -3.43 Total: -4.75 kcal Atomic # 14 Polarization: 3.57 SS G_CDS: 2.20 Total: 5.77 kcal Atomic # 16 Polarization: 0.73 SS G_CDS: -1.23 Total: -0.49 kcal Total: -20.65 -2.54 -23.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_7044652_15704122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.930 kcal (2) G-P(sol) polarization free energy of solvation -20.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds