Wall clock time and date at job start Tue Mar 9 2021 13:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86299 * 109.46878 * 2 1 4 4 C 1.50697 * 109.47139 * 119.99944 * 2 1 3 5 5 C 1.37982 * 120.32645 * 245.02265 * 4 2 1 6 6 N 1.32007 * 120.90207 * 179.97438 * 5 4 2 7 7 C 1.32341 * 121.64629 * 359.72225 * 6 5 4 8 8 N 1.39140 * 119.71829 * 180.27154 * 7 6 5 9 9 C 1.46495 * 120.00119 * 0.26510 * 8 7 6 10 10 H 1.08997 * 109.47574 * 324.99995 * 9 8 7 11 11 C 1.53002 * 109.47146 * 85.00650 * 9 8 7 12 12 C 1.52994 * 109.47442 * 59.99472 * 11 9 8 13 13 C 1.53000 * 109.46900 * 60.00323 * 12 11 9 14 14 H 1.08997 * 109.47239 * 60.00357 * 13 12 11 15 15 C 1.53004 * 109.47291 * 179.97438 * 13 12 11 16 16 O 1.42900 * 109.47168 * 295.00314 * 15 13 12 17 17 C 1.53002 * 109.47324 * 299.99932 * 13 12 11 18 18 C 1.53002 * 109.46871 * 60.00153 * 17 13 12 19 19 C 1.39348 * 120.55873 * 0.53561 * 7 6 5 20 20 F 1.35104 * 120.46812 * 179.75154 * 19 7 6 21 21 C 1.38439 * 119.05915 * 359.48391 * 19 7 6 22 22 H 0.96700 * 113.99930 * 59.99599 * 1 2 3 23 23 H 1.08993 * 109.46677 * 240.00426 * 2 1 3 24 24 H 1.48507 * 110.00303 * 298.68150 * 3 2 1 25 25 H 1.48499 * 110.00232 * 60.00327 * 3 2 1 26 26 H 1.08007 * 119.55024 * 359.95738 * 5 4 2 27 27 H 0.97006 * 119.99496 * 180.26662 * 8 7 6 28 28 H 1.09002 * 109.46977 * 180.02562 * 11 9 8 29 29 H 1.09005 * 109.46458 * 299.99367 * 11 9 8 30 30 H 1.09002 * 109.47559 * 300.00287 * 12 11 9 31 31 H 1.08999 * 109.47428 * 180.02562 * 12 11 9 32 32 H 1.08996 * 109.47028 * 54.99609 * 15 13 12 33 33 H 1.08993 * 109.47339 * 175.00264 * 15 13 12 34 34 H 0.96700 * 114.00625 * 179.97438 * 16 15 13 35 35 H 1.09002 * 109.46828 * 299.99848 * 17 13 12 36 36 H 1.08999 * 109.46947 * 179.97438 * 17 13 12 37 37 H 1.09004 * 109.46717 * 180.02562 * 18 17 13 38 38 H 1.08997 * 109.46968 * 60.00018 * 18 17 13 39 39 H 1.08001 * 120.75662 * 180.22632 * 21 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.6378 -0.0200 2.1939 6 7 3.0826 -0.6308 3.2763 7 6 2.8670 -1.9198 3.4844 8 7 3.3494 -2.5218 4.6423 9 6 4.0875 -1.7279 5.6278 10 1 4.6834 -0.9736 5.1140 11 6 3.0993 -1.0407 6.5724 12 6 2.2628 -2.0994 7.2936 13 6 3.1853 -3.0162 8.0995 14 1 3.7343 -2.4255 8.8328 15 6 2.3487 -4.0746 8.8214 16 8 1.5083 -3.4401 9.7873 17 6 4.1734 -3.7034 7.1550 18 6 5.0100 -2.6446 6.4338 19 6 2.1657 -2.6805 2.5510 20 9 1.9509 -3.9975 2.7628 21 6 1.6873 -2.0665 1.4061 22 1 -0.3933 0.4418 -0.7650 23 1 1.7923 -0.5137 -0.8900 24 1 1.5878 2.4586 -1.2243 25 1 1.5615 2.4679 1.2085 26 1 2.8296 1.0345 2.0605 27 1 3.1970 -3.4672 4.7971 28 1 3.6484 -0.4496 7.3053 29 1 2.4422 -0.3875 5.9982 30 1 1.7136 -2.6902 6.5604 31 1 1.5585 -1.6099 7.9663 32 1 1.7321 -4.6065 8.0969 33 1 3.0104 -4.7805 9.3232 34 1 0.9480 -4.0522 10.2839 35 1 3.6243 -4.2942 6.4218 36 1 4.8309 -4.3562 7.7293 37 1 5.7137 -3.1342 5.7605 38 1 5.5590 -2.0539 7.1670 39 1 1.1371 -2.6291 0.6664 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_7044652_17656566.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:37:07 Heat of formation + Delta-G solvation = -89.806146 kcal Electronic energy + Delta-G solvation = -22907.238112 eV Core-core repulsion = 19344.497649 eV Total energy + Delta-G solvation = -3562.740463 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 283.137 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.95992 -41.52336 -40.27556 -38.12532 -37.57760 -35.57511 -33.32991 -32.42491 -31.80767 -30.51198 -26.73906 -26.22362 -24.80469 -23.66011 -22.87839 -22.09315 -20.43877 -19.45803 -18.60601 -18.32485 -18.06899 -17.96502 -16.97967 -16.79479 -16.26412 -16.19869 -15.71349 -15.55305 -15.38845 -15.08980 -14.69938 -14.60197 -14.23014 -14.04621 -13.91165 -13.82943 -13.52517 -13.16832 -12.94172 -12.62959 -12.42855 -12.17863 -12.07578 -11.72372 -11.52348 -11.13004 -11.01580 -10.84798 -10.72531 -10.65454 -10.41938 -8.74338 -4.90075 -0.08395 0.11900 1.30645 1.62344 1.97325 2.00910 2.51560 3.03335 3.23145 3.29014 3.41316 3.65539 3.67772 3.74328 3.86689 3.92642 4.05084 4.09777 4.28132 4.36117 4.39212 4.43561 4.45274 4.49716 4.52957 4.64770 4.70792 4.71520 4.80591 4.99537 5.01963 5.04331 5.10428 5.14917 5.23643 5.38186 5.41064 5.45644 6.01549 6.20614 6.61567 6.84662 6.96972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.070 4.070 3 Si 0.761 3.239 4 C -0.169 4.169 5 C 0.145 3.855 6 N -0.524 5.524 7 C 0.384 3.616 8 N -0.704 5.704 9 C 0.160 3.840 10 H 0.088 0.912 11 C -0.126 4.126 12 C -0.102 4.102 13 C -0.085 4.085 14 H 0.073 0.927 15 C 0.075 3.925 16 O -0.596 6.596 17 C -0.111 4.111 18 C -0.121 4.121 19 C -0.040 4.040 20 F -0.140 7.140 21 C -0.041 4.041 22 H 0.396 0.604 23 H 0.100 0.900 24 H -0.282 1.282 25 H -0.295 1.295 26 H 0.178 0.822 27 H 0.412 0.588 28 H 0.078 0.922 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.058 0.942 34 H 0.395 0.605 35 H 0.063 0.937 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.626 -1.229 -1.698 4.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.371 6.371 2 C -0.180 4.180 3 Si 0.666 3.334 4 C -0.175 4.175 5 C -0.012 4.012 6 N -0.242 5.242 7 C 0.145 3.855 8 N -0.338 5.338 9 C 0.056 3.944 10 H 0.106 0.894 11 C -0.165 4.165 12 C -0.140 4.140 13 C -0.104 4.104 14 H 0.092 0.908 15 C -0.002 4.002 16 O -0.404 6.404 17 C -0.148 4.148 18 C -0.159 4.159 19 C -0.067 4.067 20 F -0.120 7.120 21 C -0.067 4.067 22 H 0.247 0.753 23 H 0.118 0.882 24 H -0.208 1.208 25 H -0.222 1.222 26 H 0.195 0.805 27 H 0.251 0.749 28 H 0.096 0.904 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.244 0.756 35 H 0.081 0.919 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.109 0.891 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 4.383 0.329 -0.600 4.436 hybrid contribution -2.385 -1.708 -0.764 3.031 sum 1.998 -1.378 -1.364 2.784 Atomic orbital electron populations 1.86553 1.18614 1.80708 1.51200 1.24773 0.83970 1.11659 0.97561 0.94224 0.90244 0.72033 0.76931 1.20003 1.04684 0.93589 0.99182 1.22656 0.91566 1.00042 0.86930 1.67367 1.25793 1.07468 1.23538 1.18598 0.90493 0.89094 0.87312 1.44802 1.59195 1.12118 1.17689 1.20952 0.91983 0.93494 0.88018 0.89427 1.21894 0.98481 0.97745 0.98347 1.21376 0.97602 0.97102 0.97887 1.21159 0.95946 0.96387 0.96889 0.90812 1.22320 0.92685 0.94595 0.90627 1.86436 1.58731 1.40103 1.55121 1.21495 0.97435 0.97865 0.98025 1.21805 0.97297 0.97417 0.99360 1.18122 1.09925 0.79463 0.99164 1.91458 1.93840 1.31624 1.95029 1.21437 0.95123 0.94943 0.95212 0.75297 0.88171 1.20846 1.22218 0.80537 0.74868 0.90378 0.93255 0.93205 0.93220 0.93525 0.92363 0.75601 0.91884 0.89923 0.90209 0.89098 0.82651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.68 12.82 -148.98 -1.91 -2.59 16 2 C -0.07 0.13 2.81 71.24 0.20 0.33 16 3 Si 0.76 -2.58 29.87 68.60 2.05 -0.53 16 4 C -0.17 -0.40 5.39 -19.77 -0.11 -0.50 16 5 C 0.15 0.42 9.84 84.61 0.83 1.26 16 6 N -0.52 -3.03 9.20 -193.03 -1.78 -4.81 16 7 C 0.38 2.14 7.47 133.09 0.99 3.13 16 8 N -0.70 -1.36 4.38 -324.28 -1.42 -2.78 16 9 C 0.16 0.01 2.80 45.00 0.13 0.14 16 10 H 0.09 0.15 7.54 -2.39 -0.02 0.13 16 11 C -0.13 -0.28 5.62 30.59 0.17 -0.11 16 12 C -0.10 -0.31 4.94 30.59 0.15 -0.16 16 13 C -0.09 0.03 2.43 -10.79 -0.03 0.00 16 14 H 0.07 0.09 8.14 -2.39 -0.02 0.07 16 15 C 0.08 -0.04 6.43 71.98 0.46 0.43 16 16 O -0.60 -1.60 13.19 -148.98 -1.97 -3.56 16 17 C -0.11 0.44 5.03 30.60 0.15 0.60 16 18 C -0.12 0.48 5.61 30.60 0.17 0.65 16 19 C -0.04 -0.24 7.35 22.58 0.17 -0.07 16 20 F -0.14 -0.93 16.65 44.97 0.75 -0.18 16 21 C -0.04 -0.16 9.82 22.48 0.22 0.06 16 22 H 0.40 -2.75 8.74 -74.06 -0.65 -3.39 16 23 H 0.10 -0.63 7.96 -2.39 -0.02 -0.65 16 24 H -0.28 -0.16 7.11 99.48 0.71 0.55 16 25 H -0.29 -1.13 7.05 99.48 0.70 -0.43 16 26 H 0.18 -0.26 4.87 -2.91 -0.01 -0.27 16 27 H 0.41 0.12 6.34 -92.70 -0.59 -0.47 16 28 H 0.08 0.07 8.14 -2.39 -0.02 0.05 16 29 H 0.05 0.32 8.14 -2.38 -0.02 0.30 16 30 H 0.05 0.23 7.60 -2.39 -0.02 0.21 16 31 H 0.05 0.34 7.82 -2.39 -0.02 0.32 16 32 H 0.05 -0.06 8.14 -2.39 -0.02 -0.08 16 33 H 0.06 -0.18 8.14 -2.39 -0.02 -0.20 16 34 H 0.39 -2.16 9.12 -74.06 -0.68 -2.83 16 35 H 0.06 -0.26 6.51 -2.39 -0.02 -0.27 16 36 H 0.08 -0.48 8.14 -2.39 -0.02 -0.50 16 37 H 0.08 -0.38 8.14 -2.38 -0.02 -0.40 16 38 H 0.09 -0.47 8.14 -2.39 -0.02 -0.49 16 39 H 0.16 0.19 8.06 -2.91 -0.02 0.17 16 Total: 0.00 -15.35 315.50 -1.54 -16.89 By element: Atomic # 1 Polarization: -7.40 SS G_CDS: -0.78 Total: -8.19 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: 3.52 Total: 5.74 kcal Atomic # 7 Polarization: -4.39 SS G_CDS: -3.20 Total: -7.58 kcal Atomic # 8 Polarization: -2.28 SS G_CDS: -3.88 Total: -6.15 kcal Atomic # 9 Polarization: -0.93 SS G_CDS: 0.75 Total: -0.18 kcal Atomic # 14 Polarization: -2.58 SS G_CDS: 2.05 Total: -0.53 kcal Total: -15.35 -1.54 -16.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_7044652_17656566.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.920 kcal (2) G-P(sol) polarization free energy of solvation -15.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds