Wall clock time and date at job start Tue Mar 9 2021 13:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86301 * 109.47248 * 2 1 4 4 C 1.50706 * 109.46938 * 119.99896 * 2 1 3 5 5 C 1.37984 * 120.32596 * 245.02144 * 4 2 1 6 6 N 1.32004 * 120.90147 * 179.71888 * 5 4 2 7 7 C 1.32336 * 121.64548 * 0.52681 * 6 5 4 8 8 N 1.39145 * 119.72028 * 179.74990 * 7 6 5 9 9 C 1.46505 * 119.99738 * 359.72579 * 8 7 6 10 10 H 1.08992 * 109.47276 * 325.00192 * 9 8 7 11 11 C 1.53002 * 109.46958 * 85.00105 * 9 8 7 12 12 C 1.52997 * 109.46978 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.47164 * 299.99874 * 12 11 9 14 14 H 1.08998 * 109.46505 * 299.99708 * 13 12 11 15 15 C 1.52992 * 109.47223 * 180.02562 * 13 12 11 16 16 O 1.42905 * 109.47641 * 64.99686 * 15 13 12 17 17 C 1.52997 * 109.47127 * 59.99836 * 13 12 11 18 18 C 1.52996 * 109.46998 * 204.99645 * 9 8 7 19 19 C 1.39342 * 120.56205 * 359.47317 * 7 6 5 20 20 F 1.35105 * 120.47230 * 180.27397 * 19 7 6 21 21 C 1.38436 * 119.05814 * 0.25771 * 19 7 6 22 22 H 0.96696 * 113.99355 * 59.99839 * 1 2 3 23 23 H 1.08997 * 109.47094 * 239.99120 * 2 1 3 24 24 H 1.48494 * 110.00041 * 59.99917 * 3 2 1 25 25 H 1.48505 * 109.99810 * 181.31836 * 3 2 1 26 26 H 1.08004 * 119.55008 * 359.97438 * 5 4 2 27 27 H 0.97001 * 120.00516 * 179.72666 * 8 7 6 28 28 H 1.09002 * 109.47097 * 299.99818 * 11 9 8 29 29 H 1.09001 * 109.47142 * 59.99782 * 11 9 8 30 30 H 1.09001 * 109.47375 * 59.99908 * 12 11 9 31 31 H 1.09000 * 109.47140 * 179.97438 * 12 11 9 32 32 H 1.09001 * 109.47563 * 185.00049 * 15 13 12 33 33 H 1.09004 * 109.47313 * 304.99704 * 15 13 12 34 34 H 0.96695 * 114.00050 * 180.02562 * 16 15 13 35 35 H 1.09002 * 109.47153 * 180.02562 * 17 13 12 36 36 H 1.09001 * 109.46832 * 60.00321 * 17 13 12 37 37 H 1.09004 * 109.47368 * 60.00227 * 18 9 8 38 38 H 1.09001 * 109.47372 * 300.00383 * 18 9 8 39 39 H 1.08005 * 120.76067 * 179.97438 * 21 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.6377 -0.0200 2.1940 6 7 3.0782 -0.6297 3.2788 7 6 2.8716 -1.9210 3.4819 8 7 3.3584 -2.5241 4.6375 9 6 4.1013 -1.7313 5.6203 10 1 4.6956 -0.9773 5.1044 11 6 3.1176 -1.0438 6.5694 12 6 3.8934 -0.2153 7.5954 13 6 4.8189 -1.1329 8.3970 14 1 4.2247 -1.8868 8.9133 15 6 5.5942 -0.3046 9.4234 16 8 4.6839 0.2429 10.3794 17 6 5.8024 -1.8205 7.4480 18 6 5.0262 -2.6494 6.4219 19 6 2.1658 -2.6806 2.5510 20 9 1.9512 -3.9975 2.7628 21 6 1.6873 -2.0665 1.4063 22 1 -0.3932 0.4417 -0.7650 23 1 1.7923 -0.5140 -0.8899 24 1 1.5616 2.4679 1.2084 25 1 3.5347 1.7702 -0.0321 26 1 2.8294 1.0345 2.0608 27 1 3.2059 -3.4695 4.7924 28 1 2.4586 -0.3898 5.9983 29 1 2.5232 -1.7978 7.0853 30 1 4.4876 0.5387 7.0791 31 1 3.1927 0.2748 8.2712 32 1 6.3169 -0.9416 9.9333 33 1 6.1184 0.5051 8.9157 34 1 5.1072 0.7815 11.0619 35 1 6.4615 -2.4745 8.0190 36 1 6.3966 -1.0664 6.9317 37 1 5.7270 -3.1392 5.7458 38 1 4.4317 -3.4034 6.9378 39 1 1.1372 -2.6291 0.6664 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_7082252_17656566.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:37:21 Heat of formation + Delta-G solvation = -93.990496 kcal Electronic energy + Delta-G solvation = -22538.857958 eV Core-core repulsion = 18975.936048 eV Total energy + Delta-G solvation = -3562.921911 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 283.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.83428 -41.44288 -40.13081 -38.12240 -37.51727 -35.89298 -33.34388 -32.39718 -31.80294 -30.45101 -26.88487 -25.89691 -24.59662 -23.76191 -22.77073 -21.98809 -20.96176 -19.26299 -18.55630 -18.29108 -18.20775 -17.96613 -16.85735 -16.75347 -16.33854 -16.10001 -15.65581 -15.45049 -15.29344 -15.01214 -14.69457 -14.54615 -14.35417 -14.08348 -13.92161 -13.75558 -13.59688 -13.18368 -12.92213 -12.57316 -12.27971 -12.16404 -12.06879 -11.77594 -11.55268 -11.26781 -11.06156 -10.86254 -10.68970 -10.61038 -10.31846 -8.72463 -5.03363 -0.05233 0.16060 1.22083 1.60220 1.90973 1.97671 2.55217 3.07607 3.17557 3.22988 3.35757 3.60668 3.66965 3.76167 3.85586 3.91106 3.99020 4.10831 4.23950 4.26638 4.32987 4.42989 4.45270 4.48343 4.52310 4.58540 4.61440 4.69442 4.81079 4.92536 4.99910 5.00780 5.06477 5.12645 5.27850 5.38017 5.40163 5.49941 5.99654 6.21270 6.58319 6.67176 6.98431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.059 4.059 3 Si 0.681 3.319 4 C -0.165 4.165 5 C 0.143 3.857 6 N -0.510 5.510 7 C 0.392 3.608 8 N -0.713 5.713 9 C 0.156 3.844 10 H 0.091 0.909 11 C -0.129 4.129 12 C -0.106 4.106 13 C -0.090 4.090 14 H 0.078 0.922 15 C 0.079 3.921 16 O -0.573 6.573 17 C -0.108 4.108 18 C -0.126 4.126 19 C -0.020 4.020 20 F -0.133 7.133 21 C -0.035 4.035 22 H 0.383 0.617 23 H 0.076 0.924 24 H -0.247 1.247 25 H -0.251 1.251 26 H 0.154 0.846 27 H 0.411 0.589 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.045 0.955 33 H 0.046 0.954 34 H 0.380 0.620 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.967 1.685 -2.552 3.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.170 4.170 3 Si 0.582 3.418 4 C -0.170 4.170 5 C -0.014 4.014 6 N -0.227 5.227 7 C 0.153 3.847 8 N -0.345 5.345 9 C 0.052 3.948 10 H 0.109 0.891 11 C -0.168 4.168 12 C -0.144 4.144 13 C -0.108 4.108 14 H 0.097 0.903 15 C 0.001 3.999 16 O -0.379 6.379 17 C -0.146 4.146 18 C -0.164 4.164 19 C -0.046 4.046 20 F -0.111 7.111 21 C -0.061 4.061 22 H 0.231 0.769 23 H 0.094 0.906 24 H -0.172 1.172 25 H -0.176 1.176 26 H 0.171 0.829 27 H 0.248 0.752 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.227 0.773 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.680 2.173 -1.164 3.641 hybrid contribution -0.126 -1.396 -0.047 1.403 sum 2.553 0.776 -1.211 2.931 Atomic orbital electron populations 1.86503 1.17216 1.81833 1.49769 1.24464 0.85727 1.10214 0.96590 0.95130 0.80980 0.78011 0.87697 1.19911 1.04783 0.93922 0.98429 1.22157 0.92691 0.98892 0.87685 1.67286 1.25220 1.07415 1.22763 1.18422 0.90448 0.88837 0.86945 1.44702 1.59305 1.12022 1.18497 1.21016 0.92157 0.93394 0.88241 0.89069 1.21952 0.98288 0.99583 0.96960 1.21470 0.98462 0.97501 0.96979 1.21199 0.96960 0.97722 0.94959 0.90321 1.22224 0.91340 0.96250 0.90078 1.86476 1.37488 1.71048 1.42854 1.21451 0.97452 0.99200 0.96508 1.21800 0.98518 0.98221 0.97897 1.17976 1.08599 0.79600 0.98424 1.91492 1.93646 1.31105 1.94901 1.21254 0.95266 0.94323 0.95266 0.76899 0.90649 1.17165 1.17591 0.82938 0.75162 0.91325 0.91948 0.91867 0.90871 0.93635 0.93574 0.77289 0.91075 0.91289 0.90994 0.91199 0.83173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.12 12.82 -35.23 -0.45 -0.33 16 2 C -0.06 0.03 2.81 36.01 0.10 0.13 16 3 Si 0.68 -1.12 29.88 -169.99 -5.08 -6.20 16 4 C -0.17 -0.37 5.39 -104.47 -0.56 -0.94 16 5 C 0.14 0.45 9.84 -17.57 -0.17 0.28 16 6 N -0.51 -2.07 9.20 -12.37 -0.11 -2.18 16 7 C 0.39 1.34 7.47 -154.86 -1.16 0.19 16 8 N -0.71 -1.09 5.23 -53.85 -0.28 -1.38 16 9 C 0.16 0.13 2.47 -67.93 -0.17 -0.04 16 10 H 0.09 0.19 7.54 -51.93 -0.39 -0.20 16 11 C -0.13 -0.18 5.51 -26.73 -0.15 -0.33 16 12 C -0.11 -0.11 5.10 -26.73 -0.14 -0.24 16 13 C -0.09 0.00 2.43 -90.62 -0.22 -0.22 16 14 H 0.08 0.08 8.14 -51.93 -0.42 -0.35 16 15 C 0.08 -0.02 6.43 37.15 0.24 0.22 16 16 O -0.57 -0.59 13.20 -35.23 -0.46 -1.06 16 17 C -0.11 0.13 5.21 -26.71 -0.14 -0.01 16 18 C -0.13 0.11 5.39 -26.71 -0.14 -0.03 16 19 C -0.02 -0.06 7.35 -39.10 -0.29 -0.35 16 20 F -0.13 -0.44 16.65 2.25 0.04 -0.41 16 21 C -0.03 -0.08 9.82 -39.26 -0.39 -0.47 16 22 H 0.38 -2.03 8.74 45.56 0.40 -1.63 16 23 H 0.08 -0.18 7.96 -51.93 -0.41 -0.59 16 24 H -0.25 -0.36 7.05 56.52 0.40 0.04 16 25 H -0.25 -0.18 7.11 56.52 0.40 0.23 16 26 H 0.15 0.31 4.87 -52.48 -0.26 0.05 16 27 H 0.41 0.11 8.07 -40.82 -0.33 -0.21 16 28 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.10 8.14 -51.93 -0.42 -0.32 16 30 H 0.06 0.07 8.14 -51.93 -0.42 -0.36 16 31 H 0.07 0.17 7.82 -51.93 -0.41 -0.24 16 32 H 0.05 -0.06 8.14 -51.93 -0.42 -0.48 16 33 H 0.05 -0.04 8.14 -51.93 -0.42 -0.47 16 34 H 0.38 -1.16 9.12 45.56 0.42 -0.75 16 35 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 36 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 37 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 38 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 39 H 0.15 0.12 8.06 -52.48 -0.42 -0.30 16 LS Contribution 319.94 15.07 4.82 4.82 Total: 0.00 -6.85 319.94 -9.54 -16.40 By element: Atomic # 1 Polarization: -3.01 SS G_CDS: -4.83 Total: -7.84 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -3.18 Total: -1.83 kcal Atomic # 7 Polarization: -3.16 SS G_CDS: -0.40 Total: -3.56 kcal Atomic # 8 Polarization: -0.47 SS G_CDS: -0.92 Total: -1.39 kcal Atomic # 9 Polarization: -0.44 SS G_CDS: 0.04 Total: -0.41 kcal Atomic # 14 Polarization: -1.12 SS G_CDS: -5.08 Total: -6.20 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -6.85 -9.54 -16.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_7082252_17656566.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.593 kcal (2) G-P(sol) polarization free energy of solvation -6.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds