Wall clock time and date at job start Tue Mar 9 2021 13:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86301 * 109.47248 * 2 1 4 4 C 1.50706 * 109.46938 * 119.99896 * 2 1 3 5 5 C 1.37984 * 120.32596 * 245.02144 * 4 2 1 6 6 N 1.32004 * 120.90147 * 179.71888 * 5 4 2 7 7 C 1.32336 * 121.64548 * 0.52681 * 6 5 4 8 8 N 1.39145 * 119.72028 * 179.74990 * 7 6 5 9 9 C 1.46505 * 119.99738 * 359.72579 * 8 7 6 10 10 H 1.08992 * 109.47276 * 325.00192 * 9 8 7 11 11 C 1.53002 * 109.46958 * 85.00105 * 9 8 7 12 12 C 1.52997 * 109.46978 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.47164 * 299.99874 * 12 11 9 14 14 H 1.08998 * 109.46505 * 299.99708 * 13 12 11 15 15 C 1.52992 * 109.47223 * 180.02562 * 13 12 11 16 16 O 1.42905 * 109.47641 * 64.99686 * 15 13 12 17 17 C 1.52997 * 109.47127 * 59.99836 * 13 12 11 18 18 C 1.52996 * 109.46998 * 204.99645 * 9 8 7 19 19 C 1.39342 * 120.56205 * 359.47317 * 7 6 5 20 20 F 1.35105 * 120.47230 * 180.27397 * 19 7 6 21 21 C 1.38436 * 119.05814 * 0.25771 * 19 7 6 22 22 H 0.96696 * 113.99355 * 59.99839 * 1 2 3 23 23 H 1.08997 * 109.47094 * 239.99120 * 2 1 3 24 24 H 1.48494 * 110.00041 * 59.99917 * 3 2 1 25 25 H 1.48505 * 109.99810 * 181.31836 * 3 2 1 26 26 H 1.08004 * 119.55008 * 359.97438 * 5 4 2 27 27 H 0.97001 * 120.00516 * 179.72666 * 8 7 6 28 28 H 1.09002 * 109.47097 * 299.99818 * 11 9 8 29 29 H 1.09001 * 109.47142 * 59.99782 * 11 9 8 30 30 H 1.09001 * 109.47375 * 59.99908 * 12 11 9 31 31 H 1.09000 * 109.47140 * 179.97438 * 12 11 9 32 32 H 1.09001 * 109.47563 * 185.00049 * 15 13 12 33 33 H 1.09004 * 109.47313 * 304.99704 * 15 13 12 34 34 H 0.96695 * 114.00050 * 180.02562 * 16 15 13 35 35 H 1.09002 * 109.47153 * 180.02562 * 17 13 12 36 36 H 1.09001 * 109.46832 * 60.00321 * 17 13 12 37 37 H 1.09004 * 109.47368 * 60.00227 * 18 9 8 38 38 H 1.09001 * 109.47372 * 300.00383 * 18 9 8 39 39 H 1.08005 * 120.76067 * 179.97438 * 21 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.6377 -0.0200 2.1940 6 7 3.0782 -0.6297 3.2788 7 6 2.8716 -1.9210 3.4819 8 7 3.3584 -2.5241 4.6375 9 6 4.1013 -1.7313 5.6203 10 1 4.6956 -0.9773 5.1044 11 6 3.1176 -1.0438 6.5694 12 6 3.8934 -0.2153 7.5954 13 6 4.8189 -1.1329 8.3970 14 1 4.2247 -1.8868 8.9133 15 6 5.5942 -0.3046 9.4234 16 8 4.6839 0.2429 10.3794 17 6 5.8024 -1.8205 7.4480 18 6 5.0262 -2.6494 6.4219 19 6 2.1658 -2.6806 2.5510 20 9 1.9512 -3.9975 2.7628 21 6 1.6873 -2.0665 1.4063 22 1 -0.3932 0.4417 -0.7650 23 1 1.7923 -0.5140 -0.8899 24 1 1.5616 2.4679 1.2084 25 1 3.5347 1.7702 -0.0321 26 1 2.8294 1.0345 2.0608 27 1 3.2059 -3.4695 4.7924 28 1 2.4586 -0.3898 5.9983 29 1 2.5232 -1.7978 7.0853 30 1 4.4876 0.5387 7.0791 31 1 3.1927 0.2748 8.2712 32 1 6.3169 -0.9416 9.9333 33 1 6.1184 0.5051 8.9157 34 1 5.1072 0.7815 11.0619 35 1 6.4615 -2.4745 8.0190 36 1 6.3966 -1.0664 6.9317 37 1 5.7270 -3.1392 5.7458 38 1 4.4317 -3.4034 6.9378 39 1 1.1372 -2.6291 0.6664 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_7082252_17656566.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:37:20 Heat of formation + Delta-G solvation = -93.843577 kcal Electronic energy + Delta-G solvation = -22538.851587 eV Core-core repulsion = 18975.936048 eV Total energy + Delta-G solvation = -3562.915540 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 283.137 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.06865 -41.61318 -40.18736 -38.12691 -37.51032 -35.96631 -33.50272 -32.51774 -31.85297 -30.53071 -26.92803 -25.99439 -24.73113 -23.80554 -22.88883 -22.06507 -21.01482 -19.41049 -18.62750 -18.35023 -18.21161 -18.11573 -17.04988 -16.85333 -16.45376 -16.12279 -15.70371 -15.48644 -15.37150 -15.08317 -14.83347 -14.61932 -14.44304 -14.16080 -13.99993 -13.87992 -13.66738 -13.23751 -12.92923 -12.60891 -12.35552 -12.19230 -12.11740 -11.83510 -11.58084 -11.32920 -11.14541 -10.90641 -10.85359 -10.77667 -10.25563 -8.89290 -4.93690 -0.26684 -0.01505 1.30530 1.67449 1.84646 1.97959 2.36365 2.88678 3.07057 3.26671 3.32253 3.56307 3.61258 3.70939 3.74692 3.88437 3.97298 4.05802 4.24010 4.27448 4.31451 4.36389 4.37080 4.43346 4.48638 4.56503 4.59448 4.66526 4.79913 4.87330 4.90379 4.97768 5.03302 5.08137 5.14963 5.26757 5.32895 5.42207 5.85256 6.07052 6.81620 6.86428 6.94259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.566 6.566 2 C -0.064 4.064 3 Si 0.772 3.228 4 C -0.171 4.171 5 C 0.127 3.873 6 N -0.528 5.528 7 C 0.380 3.620 8 N -0.710 5.710 9 C 0.161 3.839 10 H 0.078 0.922 11 C -0.122 4.122 12 C -0.101 4.101 13 C -0.088 4.088 14 H 0.069 0.931 15 C 0.077 3.923 16 O -0.597 6.597 17 C -0.103 4.103 18 C -0.120 4.120 19 C -0.031 4.031 20 F -0.135 7.135 21 C -0.037 4.037 22 H 0.405 0.595 23 H 0.101 0.899 24 H -0.294 1.294 25 H -0.284 1.284 26 H 0.156 0.844 27 H 0.417 0.583 28 H 0.046 0.954 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.396 0.604 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.324 1.247 -3.242 4.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.376 6.376 2 C -0.175 4.175 3 Si 0.678 3.322 4 C -0.177 4.177 5 C -0.030 4.030 6 N -0.245 5.245 7 C 0.141 3.859 8 N -0.342 5.342 9 C 0.056 3.944 10 H 0.097 0.903 11 C -0.161 4.161 12 C -0.139 4.139 13 C -0.106 4.106 14 H 0.088 0.912 15 C -0.001 4.001 16 O -0.405 6.405 17 C -0.141 4.141 18 C -0.158 4.158 19 C -0.057 4.057 20 F -0.114 7.114 21 C -0.063 4.063 22 H 0.257 0.743 23 H 0.119 0.881 24 H -0.222 1.222 25 H -0.211 1.211 26 H 0.173 0.827 27 H 0.255 0.745 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.245 0.755 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 3.024 1.727 -1.876 3.955 hybrid contribution -0.263 -1.207 0.198 1.251 sum 2.760 0.521 -1.678 3.272 Atomic orbital electron populations 1.86447 1.17140 1.82445 1.51548 1.24605 0.85940 1.10796 0.96134 0.94193 0.77627 0.75363 0.85012 1.20257 1.04150 0.94087 0.99176 1.22374 0.93302 0.99263 0.88045 1.67265 1.25947 1.07900 1.23434 1.18589 0.90827 0.88839 0.87619 1.44747 1.59063 1.12297 1.18098 1.20978 0.91951 0.93526 0.87915 0.90349 1.21864 0.98182 0.99163 0.96909 1.21396 0.98295 0.97610 0.96589 1.21181 0.96984 0.97335 0.95145 0.91234 1.22292 0.91227 0.96617 0.89954 1.86435 1.38766 1.71595 1.43695 1.21433 0.97167 0.99343 0.96181 1.21768 0.98275 0.97935 0.97840 1.18113 1.09079 0.79590 0.98946 1.91479 1.93711 1.31205 1.94977 1.21504 0.94971 0.94542 0.95257 0.74315 0.88130 1.22209 1.21081 0.82714 0.74505 0.93526 0.92173 0.91971 0.92470 0.92316 0.92926 0.75489 0.89652 0.90992 0.90309 0.90652 0.81538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 0.84 12.82 -148.98 -1.91 -1.07 16 2 C -0.06 0.12 2.81 71.24 0.20 0.32 16 3 Si 0.77 -2.51 29.88 68.60 2.05 -0.46 16 4 C -0.17 -0.83 5.39 -19.76 -0.11 -0.93 16 5 C 0.13 0.97 9.84 84.61 0.83 1.80 16 6 N -0.53 -5.20 9.20 -193.03 -1.78 -6.97 16 7 C 0.38 3.11 7.47 133.08 0.99 4.10 16 8 N -0.71 -2.94 5.23 -324.29 -1.69 -4.64 16 9 C 0.16 0.43 2.47 44.99 0.11 0.54 16 10 H 0.08 0.43 7.54 -2.39 -0.02 0.41 16 11 C -0.12 -0.56 5.51 30.59 0.17 -0.39 16 12 C -0.10 -0.34 5.10 30.60 0.16 -0.19 16 13 C -0.09 -0.03 2.43 -10.79 -0.03 -0.06 16 14 H 0.07 0.16 8.14 -2.39 -0.02 0.14 16 15 C 0.08 -0.06 6.43 71.98 0.46 0.40 16 16 O -0.60 -1.40 13.20 -148.98 -1.97 -3.37 16 17 C -0.10 0.30 5.21 30.61 0.16 0.46 16 18 C -0.12 0.23 5.39 30.61 0.17 0.40 16 19 C -0.03 -0.23 7.35 22.58 0.17 -0.06 16 20 F -0.13 -0.97 16.65 44.97 0.75 -0.22 16 21 C -0.04 -0.18 9.82 22.48 0.22 0.04 16 22 H 0.41 -4.94 8.74 -74.06 -0.65 -5.59 16 23 H 0.10 -0.67 7.96 -2.39 -0.02 -0.69 16 24 H -0.29 -1.31 7.05 99.48 0.70 -0.61 16 25 H -0.28 -0.57 7.11 99.48 0.71 0.13 16 26 H 0.16 0.91 4.87 -2.91 -0.01 0.89 16 27 H 0.42 0.54 8.07 -92.71 -0.75 -0.21 16 28 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.06 0.21 8.14 -2.39 -0.02 0.20 16 31 H 0.06 0.38 7.82 -2.39 -0.02 0.36 16 32 H 0.06 -0.20 8.14 -2.39 -0.02 -0.22 16 33 H 0.05 -0.12 8.14 -2.39 -0.02 -0.14 16 34 H 0.40 -2.38 9.12 -74.06 -0.68 -3.06 16 35 H 0.08 -0.44 8.14 -2.39 -0.02 -0.46 16 36 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 37 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 38 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 39 H 0.17 0.16 8.06 -2.91 -0.02 0.14 16 Total: 0.00 -17.01 319.94 -2.00 -19.01 By element: Atomic # 1 Polarization: -7.77 SS G_CDS: -0.95 Total: -8.72 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: 3.50 Total: 6.44 kcal Atomic # 7 Polarization: -8.14 SS G_CDS: -3.47 Total: -11.61 kcal Atomic # 8 Polarization: -0.56 SS G_CDS: -3.88 Total: -4.43 kcal Atomic # 9 Polarization: -0.97 SS G_CDS: 0.75 Total: -0.22 kcal Atomic # 14 Polarization: -2.51 SS G_CDS: 2.05 Total: -0.46 kcal Total: -17.01 -2.00 -19.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_7082252_17656566.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.836 kcal (2) G-P(sol) polarization free energy of solvation -17.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds