Wall clock time and date at job start Tue Mar 9 2021 13:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86300 * 109.47151 * 2 1 4 4 C 1.50697 * 109.46650 * 119.99881 * 2 1 3 5 5 C 1.38845 * 120.34024 * 65.00295 * 4 2 1 6 6 C 1.38342 * 118.50810 * 179.72427 * 5 4 2 7 7 C 1.39093 * 119.10002 * 359.97438 * 6 5 4 8 8 N 1.39000 * 119.70654 * 180.02562 * 7 6 5 9 9 C 1.46497 * 120.00141 * 0.02562 * 8 7 6 10 10 H 1.09004 * 109.46700 * 35.00411 * 9 8 7 11 11 C 1.53000 * 109.47321 * 154.99858 * 9 8 7 12 12 C 1.53005 * 109.47284 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.46474 * 300.00213 * 12 11 9 14 14 H 1.08998 * 109.47055 * 299.99745 * 13 12 11 15 15 O 1.42903 * 109.46475 * 180.02562 * 13 12 11 16 16 C 1.52993 * 109.47394 * 60.00408 * 13 12 11 17 17 C 1.53000 * 109.47388 * 275.00412 * 9 8 7 18 18 N 1.32427 * 120.58771 * 0.03207 * 7 6 5 19 19 C 1.31942 * 121.62381 * 359.94604 * 18 7 6 20 20 H 0.96699 * 113.99992 * 300.00181 * 1 2 3 21 21 H 1.09000 * 109.46969 * 239.99288 * 2 1 3 22 22 H 1.48498 * 109.99622 * 178.68179 * 3 2 1 23 23 H 1.48493 * 109.99755 * 299.99525 * 3 2 1 24 24 H 1.08001 * 120.74237 * 359.74107 * 5 4 2 25 25 H 1.07993 * 120.44550 * 179.97438 * 6 5 4 26 26 H 0.97000 * 120.00055 * 180.02562 * 8 7 6 27 27 H 1.09001 * 109.46915 * 300.00464 * 11 9 8 28 28 H 1.08998 * 109.47110 * 60.00284 * 11 9 8 29 29 H 1.08998 * 109.47271 * 59.99825 * 12 11 9 30 30 H 1.08993 * 109.47124 * 180.02562 * 12 11 9 31 31 H 0.96700 * 113.99717 * 180.02562 * 15 13 12 32 32 H 1.08998 * 109.47561 * 59.99646 * 16 13 12 33 33 H 1.08998 * 109.46994 * 180.02562 * 16 13 12 34 34 H 1.08998 * 109.46775 * 299.99552 * 17 9 8 35 35 H 1.08993 * 109.47299 * 59.99680 * 17 9 8 36 36 H 1.08006 * 119.57016 * 180.02562 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7104 1.2305 5 6 1.6875 -2.0659 1.4063 6 6 2.1709 -2.6812 2.5472 7 6 2.8812 -1.9254 3.4741 8 7 3.3731 -2.5309 4.6245 9 6 3.1431 -3.9590 4.8563 10 1 3.1681 -4.4901 3.9048 11 6 4.2352 -4.5088 5.7760 12 6 3.9953 -6.0005 6.0176 13 6 2.6278 -6.1971 6.6752 14 1 2.6027 -5.6662 7.6269 15 8 2.4041 -7.5903 6.9014 16 6 1.5358 -5.6474 5.7555 17 6 1.7757 -4.1552 5.5141 18 7 3.0928 -0.6341 3.2703 19 6 2.6440 -0.0214 2.1914 20 1 -0.3933 0.4417 0.7650 21 1 1.7923 -0.5139 -0.8899 22 1 3.5346 1.7702 0.0321 23 1 1.5616 2.4678 -1.2085 24 1 1.1333 -2.6274 0.6688 25 1 1.9991 -3.7339 2.7158 26 1 3.8686 -2.0078 5.2739 27 1 5.2093 -4.3690 5.3073 28 1 4.2102 -3.9777 6.7276 29 1 4.0205 -6.5314 5.0660 30 1 4.7730 -6.3921 6.6732 31 1 1.5538 -7.7897 7.3166 32 1 1.5610 -6.1782 4.8039 33 1 0.5617 -5.7871 6.2242 34 1 1.7508 -3.6241 6.4657 35 1 0.9977 -3.7636 4.8589 36 1 2.8361 1.0331 2.0586 There are 46 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 46 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_7763798_13915762.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:37:35 Heat of formation + Delta-G solvation = -46.372993 kcal Electronic energy + Delta-G solvation = -18471.797996 eV Core-core repulsion = 15535.932530 eV Total energy + Delta-G solvation = -2935.865466 eV No. of doubly occupied orbitals = 46 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.52828 -40.13222 -38.09356 -37.22869 -35.00333 -33.42523 -31.94031 -31.55907 -29.10042 -26.16424 -24.94650 -23.71257 -23.35190 -22.16751 -21.01520 -18.69144 -18.50680 -18.18259 -17.67379 -16.55551 -16.50453 -16.16721 -15.79360 -15.54652 -15.41784 -15.10505 -14.61398 -14.35195 -14.14906 -14.05106 -13.48308 -13.34090 -13.22329 -12.98765 -12.49515 -12.29358 -12.20337 -12.13284 -11.80462 -11.42900 -11.02463 -10.76268 -10.74657 -10.44313 -10.38808 -8.71119 -4.99393 0.21565 0.38448 1.33945 1.64355 1.97484 2.05120 2.81969 3.26974 3.51924 3.57719 3.64724 3.70416 3.78665 3.94859 4.02366 4.06770 4.09995 4.18736 4.27564 4.33173 4.39472 4.42473 4.52557 4.68521 4.75217 4.84791 4.89826 5.00236 5.03538 5.08670 5.10430 5.22384 5.27957 5.37194 5.52984 6.01179 6.53932 6.79722 6.86412 7.13156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.054 4.054 3 Si 0.766 3.234 4 C -0.238 4.238 5 C -0.013 4.013 6 C -0.244 4.244 7 C 0.397 3.603 8 N -0.715 5.715 9 C 0.155 3.845 10 H 0.082 0.918 11 C -0.115 4.115 12 C -0.110 4.110 13 C 0.101 3.899 14 H 0.063 0.937 15 O -0.589 6.589 16 C -0.143 4.143 17 C -0.126 4.126 18 N -0.564 5.564 19 C 0.149 3.851 20 H 0.394 0.606 21 H 0.106 0.894 22 H -0.288 1.288 23 H -0.296 1.296 24 H 0.143 0.857 25 H 0.145 0.855 26 H 0.407 0.593 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.394 0.606 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.785 -0.316 3.463 3.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.165 4.165 3 Si 0.673 3.327 4 C -0.243 4.243 5 C -0.038 4.038 6 C -0.269 4.269 7 C 0.161 3.839 8 N -0.346 5.346 9 C 0.050 3.950 10 H 0.100 0.900 11 C -0.153 4.153 12 C -0.148 4.148 13 C 0.042 3.958 14 H 0.080 0.920 15 O -0.398 6.398 16 C -0.182 4.182 17 C -0.165 4.165 18 N -0.281 5.281 19 C -0.009 4.009 20 H 0.244 0.756 21 H 0.124 0.876 22 H -0.215 1.215 23 H -0.224 1.224 24 H 0.161 0.839 25 H 0.163 0.837 26 H 0.243 0.757 27 H 0.097 0.903 28 H 0.099 0.901 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.244 0.756 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -0.200 0.174 2.884 2.896 hybrid contribution -0.669 -0.810 -0.402 1.125 sum -0.869 -0.635 2.482 2.705 Atomic orbital electron populations 1.86455 1.17409 1.82126 1.50457 1.24856 0.85052 1.10167 0.96459 0.93889 0.77888 0.75781 0.85182 1.21042 1.06898 0.96214 1.00177 1.21397 0.93189 0.93674 0.95576 1.21636 1.06519 1.01903 0.96804 1.18610 0.89450 0.88398 0.87396 1.44646 1.59839 1.09521 1.20627 1.21101 0.95091 0.79438 0.99389 0.89985 1.21667 0.98398 0.95031 1.00235 1.21406 0.96235 0.95638 1.01509 1.21904 0.94896 0.81498 0.97489 0.91954 1.86484 1.43810 1.24889 1.84582 1.22186 0.99464 0.95467 1.01043 1.21925 0.96867 0.96118 1.01617 1.67156 1.26791 1.09697 1.24485 1.22474 0.91294 0.99508 0.87583 0.75620 0.87617 1.21503 1.22393 0.83873 0.83736 0.75659 0.90298 0.90079 0.91467 0.90910 0.75632 0.91304 0.90341 0.91046 0.91626 0.81351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.16 12.84 -148.98 -1.91 -2.07 16 2 C -0.05 0.01 2.82 71.23 0.20 0.21 16 3 Si 0.77 -1.16 29.83 68.60 2.05 0.89 16 4 C -0.24 -0.32 5.36 -19.76 -0.11 -0.43 16 5 C -0.01 -0.02 9.83 22.44 0.22 0.20 16 6 C -0.24 -0.37 8.83 22.50 0.20 -0.17 16 7 C 0.40 1.33 7.63 133.05 1.02 2.35 16 8 N -0.72 0.59 5.25 -324.56 -1.70 -1.11 16 9 C 0.15 -0.60 2.14 44.99 0.10 -0.51 16 10 H 0.08 -0.27 6.45 -2.39 -0.02 -0.28 16 11 C -0.12 0.59 5.39 30.60 0.16 0.76 16 12 C -0.11 0.32 5.57 30.60 0.17 0.49 16 13 C 0.10 -0.32 3.47 30.59 0.11 -0.21 16 14 H 0.06 -0.27 8.14 -2.39 -0.02 -0.29 16 15 O -0.59 0.10 13.32 -148.98 -1.98 -1.88 16 16 C -0.14 0.71 5.55 30.61 0.17 0.88 16 17 C -0.13 0.57 5.42 30.61 0.17 0.73 16 18 N -0.56 -3.15 10.39 -193.26 -2.01 -5.16 16 19 C 0.15 0.35 9.84 84.64 0.83 1.19 16 20 H 0.39 -2.92 8.70 -74.06 -0.64 -3.57 16 21 H 0.11 0.08 7.96 -2.39 -0.02 0.06 16 22 H -0.29 -1.09 7.11 99.48 0.71 -0.38 16 23 H -0.30 -1.68 7.11 99.48 0.71 -0.97 16 24 H 0.14 -0.11 8.06 -2.91 -0.02 -0.14 16 25 H 0.14 -0.24 6.07 -2.91 -0.02 -0.26 16 26 H 0.41 -0.70 8.73 -92.71 -0.81 -1.51 16 27 H 0.08 -0.37 8.14 -2.39 -0.02 -0.39 16 28 H 0.08 -0.51 8.14 -2.39 -0.02 -0.53 16 29 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 30 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 31 H 0.39 -3.06 9.08 -74.06 -0.67 -3.73 16 32 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 33 H 0.08 -0.50 8.14 -2.39 -0.02 -0.52 16 34 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 35 H 0.07 -0.18 7.65 -2.39 -0.02 -0.20 16 36 H 0.17 -0.37 4.91 -2.91 -0.01 -0.38 16 Total: 0.00 -14.50 290.44 -3.30 -17.80 By element: Atomic # 1 Polarization: -12.98 SS G_CDS: -0.98 Total: -13.95 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: 3.24 Total: 5.48 kcal Atomic # 7 Polarization: -2.56 SS G_CDS: -3.71 Total: -6.27 kcal Atomic # 8 Polarization: -0.06 SS G_CDS: -3.90 Total: -3.96 kcal Atomic # 14 Polarization: -1.16 SS G_CDS: 2.05 Total: 0.89 kcal Total: -14.50 -3.30 -17.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_7763798_13915762.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.572 kcal (2) G-P(sol) polarization free energy of solvation -14.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds