Wall clock time and date at job start Tue Mar 9 2021 13:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.39010 * 119.99850 * 2 1 4 4 N 1.32397 * 119.70403 * 11.24220 * 3 2 1 5 5 C 1.31977 * 121.61810 * 179.97438 * 4 3 2 6 6 C 1.38021 * 120.85839 * 0.28498 * 5 4 3 7 7 C 1.50691 * 120.33737 * 179.71674 * 6 5 4 8 8 O 1.42900 * 109.47412 * 244.99871 * 7 6 5 9 9 Si 1.86306 * 109.46996 * 4.99851 * 7 6 5 10 10 C 1.38893 * 119.32607 * 359.42700 * 6 5 4 11 11 C 1.38295 * 118.50585 * 0.55400 * 10 6 5 12 12 C 1.46497 * 119.99922 * 180.02562 * 2 1 3 13 13 H 1.08998 * 109.47258 * 185.32495 * 12 2 1 14 14 C 1.52997 * 109.47026 * 305.32908 * 12 2 1 15 15 C 1.53009 * 109.46744 * 180.02562 * 14 12 2 16 16 C 1.53002 * 109.46752 * 299.99492 * 15 14 12 17 17 H 1.08995 * 109.47410 * 299.99878 * 16 15 14 18 18 O 1.42905 * 109.46797 * 180.02562 * 16 15 14 19 19 C 1.52997 * 109.47081 * 60.00714 * 16 15 14 20 20 C 1.52999 * 109.46969 * 299.99621 * 19 16 15 21 21 H 1.08998 * 109.47263 * 89.99438 * 1 2 3 22 22 H 1.08996 * 109.46970 * 209.99844 * 1 2 3 23 23 H 1.09000 * 109.47069 * 330.00271 * 1 2 3 24 24 H 1.07998 * 119.56644 * 180.02562 * 5 4 3 25 25 H 1.09003 * 109.47239 * 124.99612 * 7 6 5 26 26 H 0.96703 * 113.99563 * 179.97438 * 8 7 6 27 27 H 1.48496 * 110.00029 * 299.99627 * 9 7 6 28 28 H 1.48503 * 109.99788 * 61.32042 * 9 7 6 29 29 H 1.08001 * 120.74387 * 180.27031 * 10 6 5 30 30 H 1.08000 * 120.45388 * 179.71079 * 11 10 6 31 31 H 1.09002 * 109.47110 * 299.99620 * 14 12 2 32 32 H 1.08995 * 109.47681 * 60.00151 * 14 12 2 33 33 H 1.08995 * 109.47063 * 59.99583 * 15 14 12 34 34 H 1.08999 * 109.46551 * 179.97438 * 15 14 12 35 35 H 0.96698 * 113.99622 * 180.02562 * 18 16 15 36 36 H 1.08995 * 109.47681 * 59.99330 * 19 16 15 37 37 H 1.09002 * 109.47110 * 179.97438 * 19 16 15 38 38 H 1.08999 * 109.47157 * 299.99770 * 20 19 16 39 39 H 1.09002 * 109.47275 * 180.02562 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1600 1.2039 0.0000 4 7 1.5112 2.3360 0.2242 5 6 2.1333 3.4999 0.2333 6 6 3.4917 3.5783 0.0018 7 6 4.1891 4.9142 0.0086 8 8 4.6939 5.1947 -1.2985 9 14 2.9813 6.2426 0.5061 10 6 4.2105 2.4130 -0.2315 11 6 3.5314 1.2082 -0.2348 12 6 2.1975 -1.2687 -0.0006 13 1 3.2653 -1.0718 0.0949 14 6 1.7300 -2.1279 1.1759 15 6 2.4956 -3.4528 1.1756 16 6 2.2295 -4.1951 -0.1355 17 1 1.1619 -4.3924 -0.2312 18 8 2.9440 -5.4327 -0.1356 19 6 2.6970 -3.3359 -1.3120 20 6 1.9316 -2.0111 -1.3117 21 1 -0.3634 0.0001 -1.0276 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 1.5714 4.4030 0.4202 25 1 5.0150 4.8893 0.7195 26 1 5.1558 6.0414 -1.3683 27 1 1.8505 6.2869 -0.4553 28 1 2.4731 5.9796 1.8765 29 1 5.2749 2.4474 -0.4109 30 1 4.0584 0.2833 -0.4174 31 1 1.9199 -1.5992 2.1100 32 1 0.6623 -2.3249 1.0804 33 1 3.5632 -3.2555 1.2713 34 1 2.1629 -4.0647 2.0140 35 1 2.8219 -5.9573 -0.9387 36 1 3.7646 -3.1386 -1.2163 37 1 2.5078 -3.8650 -2.2461 38 1 0.8639 -2.2083 -1.4075 39 1 2.2642 -1.3991 -2.1501 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_9156392_13915762.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:40:33 Heat of formation + Delta-G solvation = -30.800117 kcal Electronic energy + Delta-G solvation = -20557.195657 eV Core-core repulsion = 17466.467862 eV Total energy + Delta-G solvation = -3090.727794 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 265.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.73086 -40.28256 -38.22265 -37.40994 -35.43777 -33.60540 -32.28234 -31.93259 -29.84373 -28.03126 -26.00928 -24.27641 -23.85167 -23.35771 -21.89931 -20.70664 -18.86537 -18.40963 -18.23621 -17.91666 -16.89435 -16.39880 -16.28901 -16.05220 -15.60421 -15.23484 -15.09738 -14.81786 -14.39685 -14.24835 -14.17195 -13.97575 -13.85229 -13.39686 -13.29269 -13.07312 -12.80057 -12.50904 -12.29334 -12.21462 -12.06233 -11.66884 -11.38731 -11.03304 -10.88397 -10.75596 -10.68837 -10.17276 -8.65794 -4.96767 0.02350 0.26411 1.31601 1.63724 1.73387 1.97302 2.63044 3.22324 3.23233 3.48077 3.52354 3.63493 3.73405 3.82872 3.93859 3.97355 4.04785 4.11611 4.19409 4.21121 4.29588 4.32194 4.42455 4.44294 4.57544 4.61403 4.66239 4.75236 4.79843 4.86742 4.94841 4.99233 5.04876 5.05869 5.17074 5.20966 5.30717 5.41825 5.85791 6.22032 6.84919 6.91762 6.96080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.606 5.606 3 C 0.391 3.609 4 N -0.563 5.563 5 C 0.126 3.874 6 C -0.201 4.201 7 C -0.059 4.059 8 O -0.565 6.565 9 Si 0.769 3.231 10 C -0.008 4.008 11 C -0.237 4.237 12 C 0.150 3.850 13 H 0.096 0.904 14 C -0.119 4.119 15 C -0.109 4.109 16 C 0.103 3.897 17 H 0.062 0.938 18 O -0.588 6.588 19 C -0.142 4.142 20 C -0.121 4.121 21 H 0.048 0.952 22 H 0.085 0.915 23 H 0.063 0.937 24 H 0.140 0.860 25 H 0.096 0.904 26 H 0.403 0.597 27 H -0.299 1.299 28 H -0.291 1.291 29 H 0.159 0.841 30 H 0.156 0.844 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.394 0.606 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.822 0.364 -0.663 2.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.319 5.319 3 C 0.157 3.843 4 N -0.280 5.280 5 C -0.031 4.031 6 C -0.206 4.206 7 C -0.170 4.170 8 O -0.375 6.375 9 Si 0.676 3.324 10 C -0.033 4.033 11 C -0.262 4.262 12 C 0.047 3.953 13 H 0.114 0.886 14 C -0.157 4.157 15 C -0.147 4.147 16 C 0.044 3.956 17 H 0.080 0.920 18 O -0.396 6.396 19 C -0.180 4.180 20 C -0.160 4.160 21 H 0.067 0.933 22 H 0.104 0.896 23 H 0.082 0.918 24 H 0.157 0.843 25 H 0.114 0.886 26 H 0.254 0.746 27 H -0.227 1.227 28 H -0.218 1.218 29 H 0.176 0.824 30 H 0.173 0.827 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.244 0.756 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.922 -0.011 0.190 0.941 hybrid contribution 0.398 -0.578 -0.685 0.981 sum 1.320 -0.588 -0.495 1.528 Atomic orbital electron populations 1.21615 0.78650 1.03256 1.01424 1.46556 1.05951 1.01574 1.77786 1.18659 0.89077 0.86340 0.90253 1.67074 1.40857 0.98279 1.21806 1.22161 0.91811 0.94295 0.94794 1.20363 0.94317 0.96645 1.09322 1.24503 1.04983 0.98394 0.89114 1.86445 1.77579 1.45122 1.28372 0.94491 0.77794 0.84555 0.75549 1.21492 1.01258 0.90209 0.90390 1.21785 0.93449 1.00581 1.10345 1.21305 0.96934 0.81428 0.95594 0.88640 1.21798 1.01185 0.94771 0.97971 1.21405 1.01198 0.94989 0.97078 1.21866 0.95126 0.83643 0.94970 0.91982 1.86485 1.73651 1.33255 1.46241 1.22175 1.00931 0.95670 0.99222 1.21809 1.01539 0.95884 0.96749 0.93348 0.89631 0.91793 0.84280 0.88581 0.74560 1.22708 1.21826 0.82369 0.82701 0.91363 0.90390 0.91337 0.91050 0.75576 0.91109 0.90038 0.90919 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.21 9.82 127.77 1.26 1.47 16 2 N -0.61 -2.22 2.88 -704.68 -2.03 -4.25 16 3 C 0.39 3.23 7.33 133.06 0.98 4.21 16 4 N -0.56 -6.85 9.08 -193.26 -1.75 -8.61 16 5 C 0.13 1.33 9.84 84.62 0.83 2.16 16 6 C -0.20 -1.33 5.39 -19.76 -0.11 -1.44 16 7 C -0.06 -0.01 2.81 71.23 0.20 0.19 16 8 O -0.57 0.01 12.82 -148.98 -1.91 -1.90 16 9 Si 0.77 -0.52 29.88 68.60 2.05 1.53 16 10 C -0.01 -0.04 9.84 22.44 0.22 0.19 16 11 C -0.24 -1.12 9.24 22.50 0.21 -0.91 16 12 C 0.15 -0.16 2.37 44.99 0.11 -0.05 16 13 H 0.10 -0.14 5.51 -2.39 -0.01 -0.15 16 14 C -0.12 0.25 5.07 30.60 0.16 0.40 16 15 C -0.11 0.15 5.57 30.60 0.17 0.32 16 16 C 0.10 -0.24 3.47 30.59 0.11 -0.14 16 17 H 0.06 -0.22 8.14 -2.39 -0.02 -0.24 16 18 O -0.59 -0.13 13.32 -148.98 -1.98 -2.12 16 19 C -0.14 0.59 5.55 30.59 0.17 0.76 16 20 C -0.12 0.35 5.28 30.59 0.16 0.51 16 21 H 0.05 0.10 8.14 -2.39 -0.02 0.08 16 22 H 0.09 -0.17 6.16 -2.39 -0.01 -0.18 16 23 H 0.06 0.38 7.24 -2.39 -0.02 0.36 16 24 H 0.14 1.36 4.87 -2.91 -0.01 1.34 16 25 H 0.10 -0.44 7.96 -2.39 -0.02 -0.46 16 26 H 0.40 -4.34 8.74 -74.06 -0.65 -4.98 16 27 H -0.30 -2.20 7.05 99.48 0.70 -1.50 16 28 H -0.29 -1.53 7.11 99.48 0.71 -0.82 16 29 H 0.16 -0.08 8.06 -2.91 -0.02 -0.10 16 30 H 0.16 -0.02 5.98 -2.91 -0.02 -0.04 16 31 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 32 H 0.08 -0.24 6.51 -2.39 -0.02 -0.26 16 33 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 34 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 35 H 0.39 -2.96 9.08 -74.06 -0.67 -3.64 16 36 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 37 H 0.08 -0.49 8.14 -2.39 -0.02 -0.50 16 38 H 0.07 -0.23 7.81 -2.39 -0.02 -0.24 16 39 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 Total: 0.00 -18.07 306.78 -1.39 -19.47 By element: Atomic # 1 Polarization: -11.58 SS G_CDS: -0.22 Total: -11.80 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: 4.45 Total: 7.67 kcal Atomic # 7 Polarization: -9.07 SS G_CDS: -3.78 Total: -12.85 kcal Atomic # 8 Polarization: -0.12 SS G_CDS: -3.89 Total: -4.01 kcal Atomic # 14 Polarization: -0.52 SS G_CDS: 2.05 Total: 1.53 kcal Total: -18.07 -1.39 -19.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_9156392_13915762.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.335 kcal (2) G-P(sol) polarization free energy of solvation -18.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds