Wall clock time and date at job start Tue Mar 9 2021 13:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.38612 * 119.99834 * 2 1 4 4 N 1.29689 * 124.94621 * 179.69345 * 3 2 1 5 5 C 1.32125 * 116.86303 * 179.81362 * 4 3 2 6 6 C 1.33331 * 114.57880 * 0.47111 * 5 4 3 7 7 C 1.50697 * 125.94755 * 179.75229 * 6 5 4 8 8 O 1.42904 * 109.47010 * 120.00420 * 7 6 5 9 9 Si 1.86292 * 109.47680 * 0.02562 * 7 6 5 10 10 S 1.70963 * 124.94964 * 359.97438 * 3 2 1 11 11 C 1.46499 * 120.00271 * 179.97438 * 2 1 3 12 12 H 1.09002 * 109.47391 * 180.02562 * 11 2 1 13 13 C 1.53000 * 109.46840 * 300.00476 * 11 2 1 14 14 C 1.53001 * 109.46886 * 180.02562 * 13 11 2 15 15 C 1.53002 * 109.46963 * 299.99499 * 14 13 11 16 16 H 1.09002 * 109.47067 * 300.00341 * 15 14 13 17 17 O 1.42900 * 109.47442 * 180.02562 * 15 14 13 18 18 C 1.52997 * 109.47092 * 60.00194 * 15 14 13 19 19 C 1.53002 * 109.46799 * 60.00241 * 11 2 1 20 20 H 1.08994 * 109.47057 * 270.00052 * 1 2 3 21 21 H 1.09006 * 109.46711 * 30.00213 * 1 2 3 22 22 H 1.08998 * 109.46853 * 150.00007 * 1 2 3 23 23 H 1.07997 * 122.71090 * 180.22353 * 5 4 3 24 24 H 1.09008 * 109.46818 * 239.99802 * 7 6 5 25 25 H 0.96694 * 113.99920 * 299.99833 * 8 7 6 26 26 H 1.48502 * 109.99811 * 58.68056 * 9 7 6 27 27 H 1.48499 * 110.00280 * 179.97438 * 9 7 6 28 28 H 1.09001 * 109.47194 * 299.99493 * 13 11 2 29 29 H 1.08992 * 109.47399 * 59.99666 * 13 11 2 30 30 H 1.09000 * 109.47437 * 180.02562 * 14 13 11 31 31 H 1.09002 * 109.47508 * 59.99571 * 14 13 11 32 32 H 0.96697 * 113.99983 * 59.99480 * 17 15 14 33 33 H 1.09001 * 109.47375 * 180.02562 * 18 15 14 34 34 H 1.09002 * 109.47497 * 59.99850 * 18 15 14 35 35 H 1.09002 * 109.47075 * 299.99543 * 19 11 2 36 36 H 1.08996 * 109.47407 * 60.00500 * 19 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1580 1.2004 0.0000 4 7 3.4501 1.3123 0.0057 5 6 3.9432 2.5380 0.0009 6 6 3.0253 3.5051 0.0006 7 6 3.3012 4.9866 0.0009 8 8 2.7265 5.5784 -1.1660 9 14 5.1415 5.2758 0.0009 10 16 1.4341 2.7492 -0.0006 11 6 2.1975 -1.2687 0.0006 12 1 3.2692 -1.0695 0.0009 13 6 1.8278 -2.0704 1.2501 14 6 2.5934 -3.3951 1.2511 15 6 2.2243 -4.1983 0.0022 16 1 1.1527 -4.3978 0.0020 17 8 2.9388 -5.4358 0.0032 18 6 2.5940 -3.3965 -1.2474 19 6 1.8280 -2.0715 -1.2484 20 1 -0.3633 0.0000 1.0276 21 1 -0.3633 0.8900 -0.5139 22 1 -0.3633 -0.8900 -0.5138 23 1 5.0041 2.7403 0.0013 24 1 2.8621 5.4378 0.8908 25 1 3.0713 5.2241 -1.9971 26 1 5.7558 4.6383 -1.1913 27 1 5.4268 6.7331 0.0006 28 1 2.0911 -1.4985 2.1399 29 1 0.7563 -2.2696 1.2502 30 1 2.3297 -3.9666 2.1410 31 1 3.6650 -3.1956 1.2512 32 1 2.7527 -5.9968 0.7685 33 1 2.3307 -3.9685 -2.1372 34 1 3.6655 -3.1969 -1.2473 35 1 0.7563 -2.2707 -1.2483 36 1 2.0913 -1.5003 -2.1386 There are 47 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 47 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_9156392_15704118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:40:36 Heat of formation + Delta-G solvation = -27.822763 kcal Electronic energy + Delta-G solvation = -19117.453729 eV Core-core repulsion = 16116.007289 eV Total energy + Delta-G solvation = -3001.446440 eV No. of doubly occupied orbitals = 47 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.09684 -40.10487 -38.28467 -37.59781 -35.41582 -31.90456 -31.86202 -29.95999 -28.32609 -25.75080 -24.75580 -23.83225 -22.82365 -21.00275 -20.28893 -19.65691 -18.22389 -17.80460 -17.52191 -16.75014 -16.60038 -15.97800 -15.92437 -15.61241 -15.42323 -14.91848 -14.80260 -14.31799 -14.14001 -13.85702 -13.56440 -13.36955 -13.21645 -12.92561 -12.81142 -12.39194 -12.35746 -12.21880 -11.96705 -11.67354 -11.36427 -10.98578 -10.74858 -10.66892 -10.52275 -10.16763 -8.62243 -4.92229 -0.09758 0.05319 0.70617 1.43976 1.62131 1.79651 1.89549 1.97366 3.24338 3.35932 3.49824 3.58405 3.67838 3.84890 3.97942 4.09790 4.15718 4.18716 4.28304 4.37149 4.39906 4.40784 4.49915 4.60213 4.66007 4.72566 4.84781 4.89249 4.99703 5.06453 5.09151 5.10007 5.24626 5.33871 5.71899 5.96156 6.42068 6.87779 6.88411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.575 5.575 3 C 0.308 3.692 4 N -0.579 5.579 5 C 0.090 3.910 6 C -0.310 4.310 7 C -0.039 4.039 8 O -0.549 6.549 9 Si 0.783 3.217 10 S 0.124 5.876 11 C 0.156 3.844 12 H 0.083 0.917 13 C -0.117 4.117 14 C -0.143 4.143 15 C 0.104 3.896 16 H 0.070 0.930 17 O -0.590 6.590 18 C -0.110 4.110 19 C -0.116 4.116 20 H 0.073 0.927 21 H 0.070 0.930 22 H 0.102 0.898 23 H 0.189 0.811 24 H 0.124 0.876 25 H 0.386 0.614 26 H -0.281 1.281 27 H -0.293 1.293 28 H 0.062 0.938 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.059 0.941 32 H 0.395 0.605 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.086 0.914 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.974 -2.640 2.799 4.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.293 5.293 3 C -0.061 4.061 4 N -0.305 5.305 5 C -0.061 4.061 6 C -0.433 4.433 7 C -0.149 4.149 8 O -0.357 6.357 9 Si 0.686 3.314 10 S 0.375 5.625 11 C 0.050 3.950 12 H 0.101 0.899 13 C -0.156 4.156 14 C -0.181 4.181 15 C 0.046 3.954 16 H 0.088 0.912 17 O -0.398 6.398 18 C -0.148 4.148 19 C -0.155 4.155 20 H 0.091 0.909 21 H 0.089 0.911 22 H 0.121 0.879 23 H 0.205 0.795 24 H 0.141 0.859 25 H 0.235 0.765 26 H -0.208 1.208 27 H -0.221 1.221 28 H 0.081 0.919 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.078 0.922 32 H 0.244 0.756 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.105 0.895 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.272 -1.993 2.273 4.455 hybrid contribution 0.322 -0.032 -0.659 0.734 sum -2.950 -2.025 1.614 3.926 Atomic orbital electron populations 1.22067 0.76145 1.04620 1.03460 1.46262 1.05823 1.00556 1.76653 1.23962 0.91596 0.92919 0.97610 1.66432 1.09730 1.25905 1.28465 1.21563 1.01292 0.85058 0.98231 1.25993 0.94502 1.01194 1.21658 1.24625 1.12773 0.86632 0.90904 1.86567 1.67072 1.65385 1.16663 0.93884 0.71526 0.78558 0.87433 1.83984 1.09404 0.95946 1.73184 1.21183 0.96957 0.81419 0.95398 0.89876 1.21771 1.01589 0.95239 0.96954 1.22175 1.00790 0.96243 0.98898 1.21872 0.95470 0.83565 0.94521 0.91194 1.86488 1.70866 1.31565 1.50901 1.21416 1.00591 0.94997 0.97826 1.21796 1.01595 0.94799 0.97298 0.90879 0.91104 0.87911 0.79468 0.85867 0.76475 1.20767 1.22070 0.91946 0.89765 0.89750 0.92196 0.75550 0.90960 0.92378 0.89540 0.91886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.45 9.47 127.77 1.21 0.76 16 2 N -0.58 -0.09 2.87 -711.58 -2.04 -2.13 16 3 C 0.31 1.42 7.75 179.32 1.39 2.80 16 4 N -0.58 -4.26 9.54 -202.02 -1.93 -6.19 16 5 C 0.09 0.35 10.07 83.54 0.84 1.19 16 6 C -0.31 -0.90 5.93 24.57 0.15 -0.75 16 7 C -0.04 -0.03 3.08 71.23 0.22 0.19 16 8 O -0.55 -2.04 12.88 -148.98 -1.92 -3.96 16 9 Si 0.78 -1.17 30.48 68.60 2.09 0.92 16 10 S 0.12 0.36 21.68 -56.49 -1.22 -0.87 16 11 C 0.16 -0.06 2.59 44.99 0.12 0.06 16 12 H 0.08 0.41 7.12 -2.39 -0.02 0.39 16 13 C -0.12 0.40 5.20 30.59 0.16 0.56 16 14 C -0.14 0.48 5.55 30.60 0.17 0.65 16 15 C 0.10 -0.23 3.47 30.59 0.11 -0.12 16 16 H 0.07 -0.35 8.14 -2.39 -0.02 -0.37 16 17 O -0.59 -0.48 13.32 -148.98 -1.98 -2.46 16 18 C -0.11 0.04 5.58 30.61 0.17 0.21 16 19 C -0.12 0.27 5.19 30.61 0.16 0.42 16 20 H 0.07 -0.54 8.14 -2.39 -0.02 -0.56 16 21 H 0.07 -0.38 7.04 -2.38 -0.02 -0.40 16 22 H 0.10 -0.96 6.43 -2.39 -0.02 -0.97 16 23 H 0.19 -0.11 5.85 -2.91 -0.02 -0.13 16 24 H 0.12 -0.08 7.96 -2.38 -0.02 -0.10 16 25 H 0.39 -0.58 8.70 -74.06 -0.64 -1.22 16 26 H -0.28 -0.75 7.11 99.48 0.71 -0.04 16 27 H -0.29 -1.53 7.11 99.48 0.71 -0.83 16 28 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 29 H 0.08 -0.55 7.67 -2.39 -0.02 -0.57 16 30 H 0.08 -0.50 8.14 -2.39 -0.02 -0.52 16 31 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 32 H 0.39 -2.88 9.08 -74.06 -0.67 -3.55 16 33 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 34 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 35 H 0.09 -0.50 6.66 -2.39 -0.02 -0.51 16 36 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 Total: 0.00 -15.55 300.49 -2.49 -18.05 By element: Atomic # 1 Polarization: -9.15 SS G_CDS: -0.18 Total: -9.33 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: 4.69 Total: 5.96 kcal Atomic # 7 Polarization: -4.35 SS G_CDS: -3.97 Total: -8.32 kcal Atomic # 8 Polarization: -2.52 SS G_CDS: -3.90 Total: -6.42 kcal Atomic # 14 Polarization: -1.17 SS G_CDS: 2.09 Total: 0.92 kcal Atomic # 16 Polarization: 0.36 SS G_CDS: -1.22 Total: -0.87 kcal Total: -15.55 -2.49 -18.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_9156392_15704118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.776 kcal (2) G-P(sol) polarization free energy of solvation -15.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds