Wall clock time and date at job start Tue Mar 9 2021 13:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33330 * 125.94995 * 2 1 4 4 C 1.50701 * 122.70899 * 0.02562 * 3 2 1 5 5 O 1.42894 * 109.47204 * 30.00205 * 4 3 2 6 6 Si 1.86303 * 109.46999 * 150.00033 * 4 3 2 7 7 N 1.32119 * 114.57789 * 179.82832 * 3 2 1 8 8 C 1.29691 * 116.86662 * 0.47839 * 7 3 2 9 9 N 1.38603 * 124.95113 * 179.73721 * 8 7 3 10 10 C 1.46499 * 120.00005 * 359.97438 * 9 8 7 11 11 C 1.46505 * 120.00248 * 179.97438 * 9 8 7 12 12 H 1.09003 * 109.46830 * 0.02562 * 11 9 8 13 13 C 1.52996 * 109.47077 * 119.99991 * 11 9 8 14 14 C 1.53000 * 109.47185 * 180.02562 * 13 11 9 15 15 C 1.53005 * 109.47125 * 300.00153 * 14 13 11 16 16 H 1.08997 * 109.47216 * 300.00080 * 15 14 13 17 17 O 1.42897 * 109.46988 * 179.97438 * 15 14 13 18 18 C 1.53005 * 109.47056 * 59.99899 * 15 14 13 19 19 C 1.52995 * 109.46935 * 299.99870 * 18 15 14 20 20 S 1.70975 * 110.09880 * 359.73947 * 8 7 3 21 21 H 1.09002 * 109.47152 * 179.71292 * 1 2 3 22 22 H 1.09001 * 109.46980 * 59.71392 * 1 2 3 23 23 H 1.09004 * 109.47113 * 299.71373 * 1 2 3 24 24 H 1.08997 * 109.46922 * 269.99694 * 4 3 2 25 25 H 0.96703 * 114.00558 * 59.99653 * 5 4 3 26 26 H 1.48496 * 110.00336 * 179.97438 * 6 4 3 27 27 H 1.48507 * 109.99989 * 301.32185 * 6 4 3 28 28 H 1.09005 * 109.47370 * 89.99936 * 10 9 8 29 29 H 1.09003 * 109.47457 * 209.99817 * 10 9 8 30 30 H 1.09000 * 109.47243 * 330.00029 * 10 9 8 31 31 H 1.09000 * 109.47549 * 300.00586 * 13 11 9 32 32 H 1.09003 * 109.47250 * 60.00307 * 13 11 9 33 33 H 1.08998 * 109.47127 * 180.02562 * 14 13 11 34 34 H 1.09003 * 109.46793 * 60.00007 * 14 13 11 35 35 H 0.96695 * 113.99908 * 60.00404 * 17 15 14 36 36 H 1.09000 * 109.46911 * 180.02562 * 18 15 14 37 37 H 1.09003 * 109.47357 * 59.99843 * 18 15 14 38 38 H 1.08997 * 109.47422 * 299.99871 * 19 18 15 39 39 H 1.09008 * 109.47375 * 179.97438 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7414 2.4830 0.0006 5 8 0.4816 2.5019 0.6747 6 14 2.9326 3.6148 0.8787 7 7 3.5850 0.8188 0.0036 8 6 3.9315 -0.4309 -0.0030 9 7 5.2384 -0.8926 -0.0059 10 6 6.3517 0.0597 -0.0019 11 6 5.5066 -2.3328 -0.0129 12 1 4.5627 -2.8781 -0.0155 13 6 6.3084 -2.6962 -1.2643 14 6 6.5879 -4.2004 -1.2719 15 6 7.3907 -4.5764 -0.0248 16 1 8.3346 -4.0314 -0.0224 17 8 7.6512 -5.9814 -0.0317 18 6 6.5888 -4.2130 1.2266 19 6 6.3094 -2.7088 1.2342 20 16 2.5412 -1.4261 -0.0078 21 1 -0.3633 -1.0277 -0.0051 22 1 -0.3633 0.5183 -0.8874 23 1 -0.3633 0.5094 0.8926 24 1 1.6088 2.8217 -1.0269 25 1 0.5241 2.2118 1.5962 26 1 2.4036 5.0023 0.8856 27 1 3.1465 3.1452 2.2712 28 1 6.6283 0.2911 1.0268 29 1 7.2061 -0.3779 -0.5182 30 1 6.0490 0.9747 -0.5112 31 1 5.7364 -2.4287 -2.1527 32 1 7.2522 -2.1509 -1.2621 33 1 7.1595 -4.4592 -2.1632 34 1 5.6438 -4.7453 -1.2743 35 1 8.1569 -6.2838 -0.7984 36 1 7.1609 -4.4804 2.1150 37 1 5.6448 -4.7579 1.2242 38 1 7.2533 -2.1638 1.2366 39 1 5.7377 -2.4499 2.1255 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_9156392_15704122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:40:39 Heat of formation + Delta-G solvation = -33.570010 kcal Electronic energy + Delta-G solvation = -21175.627065 eV Core-core repulsion = 18018.393786 eV Total energy + Delta-G solvation = -3157.233279 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 285.119 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.19757 -40.46620 -38.35551 -37.40462 -35.41052 -32.78987 -32.08561 -30.12256 -29.48668 -27.78469 -25.56253 -24.16589 -23.98560 -22.42453 -21.00080 -20.13715 -19.24599 -18.33713 -17.96244 -17.34506 -16.86683 -16.66272 -15.84542 -15.70975 -15.66420 -15.61690 -14.95430 -14.54905 -14.28911 -14.10056 -13.76849 -13.64178 -13.60656 -13.48968 -13.39296 -13.18568 -12.98826 -12.68421 -12.44615 -12.37262 -12.27701 -11.91165 -11.72442 -11.44582 -10.96086 -10.76776 -10.52724 -10.40242 -9.96800 -8.45805 -4.66832 0.05522 0.18386 0.81303 1.40543 1.68090 1.84219 1.98344 2.13695 3.06797 3.23723 3.35124 3.46345 3.51944 3.77903 3.87542 3.99487 4.00571 4.12478 4.18185 4.19313 4.28094 4.37279 4.48015 4.51960 4.59927 4.65391 4.66436 4.80779 4.81720 4.85599 4.89091 4.90763 4.93623 5.07539 5.10588 5.16359 5.31105 5.68075 6.00911 6.37079 6.59092 6.97469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C -0.243 4.243 3 C 0.068 3.932 4 C -0.041 4.041 5 O -0.526 6.526 6 Si 0.721 3.279 7 N -0.536 5.536 8 C 0.322 3.678 9 N -0.579 5.579 10 C 0.097 3.903 11 C 0.153 3.847 12 H 0.087 0.913 13 C -0.128 4.128 14 C -0.150 4.150 15 C 0.103 3.897 16 H 0.057 0.943 17 O -0.567 6.567 18 C -0.111 4.111 19 C -0.126 4.126 20 S 0.091 5.909 21 H 0.058 0.942 22 H 0.076 0.924 23 H 0.079 0.921 24 H 0.123 0.877 25 H 0.375 0.625 26 H -0.261 1.261 27 H -0.268 1.268 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.380 0.620 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.505 -1.885 -1.634 4.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.366 4.366 3 C -0.062 4.062 4 C -0.154 4.154 5 O -0.331 6.331 6 Si 0.622 3.378 7 N -0.263 5.263 8 C -0.047 4.047 9 N -0.298 5.298 10 C -0.047 4.047 11 C 0.050 3.950 12 H 0.105 0.895 13 C -0.166 4.166 14 C -0.188 4.188 15 C 0.044 3.956 16 H 0.075 0.925 17 O -0.373 6.373 18 C -0.149 4.149 19 C -0.165 4.165 20 S 0.342 5.658 21 H 0.077 0.923 22 H 0.094 0.906 23 H 0.097 0.903 24 H 0.141 0.859 25 H 0.223 0.777 26 H -0.187 1.187 27 H -0.193 1.193 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.228 0.772 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.486 -1.832 -0.976 4.057 hybrid contribution -0.678 0.159 0.044 0.698 sum 2.808 -1.672 -0.932 3.398 Atomic orbital electron populations 1.20131 0.86519 1.01614 1.03552 1.25130 1.01243 0.92845 1.17360 1.20073 0.86907 0.97069 1.02198 1.24458 0.91857 0.95413 1.03622 1.86620 1.28652 1.89027 1.28821 0.93675 0.86149 0.76371 0.81654 1.65711 1.16823 1.16345 1.27440 1.23288 0.91138 0.91550 0.98760 1.45969 1.00195 1.05601 1.78010 1.21699 0.87886 0.93139 1.01963 1.21249 0.99548 0.78466 0.95773 0.89480 1.21881 1.01035 0.96100 0.97614 1.22259 1.02030 0.95737 0.98817 1.21843 0.97121 0.81946 0.94693 0.92470 1.86529 1.77981 1.23099 1.49658 1.21442 1.01081 0.94801 0.97619 1.21891 1.01047 0.95866 0.97689 1.83981 0.96639 1.10742 1.74452 0.92350 0.90582 0.90295 0.85907 0.77682 1.18654 1.19252 0.92773 0.91086 0.89870 0.90731 0.90690 0.90845 0.90658 0.77246 0.90367 0.90782 0.90660 0.90510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.04 8.90 36.01 0.32 0.28 16 2 C -0.24 -0.53 6.50 -36.02 -0.23 -0.76 16 3 C 0.07 0.17 5.92 -84.18 -0.50 -0.32 16 4 C -0.04 -0.06 2.94 36.01 0.11 0.05 16 5 O -0.53 -0.73 10.18 -35.23 -0.36 -1.09 16 6 Si 0.72 0.99 32.08 -169.99 -5.45 -4.46 16 7 N -0.54 -1.52 8.15 -11.36 -0.09 -1.62 16 8 C 0.32 0.63 7.74 -87.68 -0.68 -0.05 16 9 N -0.58 0.09 2.87 -176.26 -0.51 -0.42 16 10 C 0.10 -0.15 9.62 59.85 0.58 0.42 16 11 C 0.15 -0.24 2.55 -67.93 -0.17 -0.41 16 12 H 0.09 -0.08 6.34 -51.93 -0.33 -0.41 16 13 C -0.13 0.32 5.18 -26.73 -0.14 0.18 16 14 C -0.15 0.39 5.55 -26.73 -0.15 0.24 16 15 C 0.10 -0.18 3.47 -26.73 -0.09 -0.28 16 16 H 0.06 -0.14 8.14 -51.93 -0.42 -0.56 16 17 O -0.57 0.18 13.32 -35.23 -0.47 -0.29 16 18 C -0.11 0.16 5.57 -26.73 -0.15 0.01 16 19 C -0.13 0.26 5.21 -26.73 -0.14 0.12 16 20 S 0.09 0.13 21.38 -107.50 -2.30 -2.17 16 21 H 0.06 0.00 8.14 -51.93 -0.42 -0.42 16 22 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 23 H 0.08 -0.01 6.41 -51.93 -0.33 -0.34 16 24 H 0.12 0.09 7.96 -51.93 -0.41 -0.33 16 25 H 0.38 -0.36 8.13 45.56 0.37 0.01 16 26 H -0.26 -0.95 7.11 56.52 0.40 -0.55 16 27 H -0.27 -1.12 7.11 56.52 0.40 -0.72 16 28 H 0.05 -0.09 8.14 -51.93 -0.42 -0.51 16 29 H 0.07 -0.23 6.43 -51.93 -0.33 -0.57 16 30 H 0.08 -0.07 7.62 -51.93 -0.40 -0.46 16 31 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 32 H 0.07 -0.23 6.66 -51.93 -0.35 -0.58 16 33 H 0.07 -0.25 8.14 -51.93 -0.42 -0.67 16 34 H 0.07 -0.14 8.14 -51.93 -0.42 -0.56 16 35 H 0.38 -1.56 9.08 45.56 0.41 -1.15 16 36 H 0.08 -0.08 8.14 -51.93 -0.42 -0.50 16 37 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 38 H 0.07 -0.19 7.67 -51.93 -0.40 -0.59 16 39 H 0.08 -0.10 8.14 -51.92 -0.42 -0.52 16 LS Contribution 319.07 15.07 4.81 4.81 Total: 0.00 -5.76 319.07 -10.81 -16.57 By element: Atomic # 1 Polarization: -5.62 SS G_CDS: -5.19 Total: -10.81 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -1.25 Total: -0.51 kcal Atomic # 7 Polarization: -1.44 SS G_CDS: -0.60 Total: -2.04 kcal Atomic # 8 Polarization: -0.55 SS G_CDS: -0.83 Total: -1.38 kcal Atomic # 14 Polarization: 0.99 SS G_CDS: -5.45 Total: -4.46 kcal Atomic # 16 Polarization: 0.13 SS G_CDS: -2.30 Total: -2.17 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -5.76 -10.81 -16.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_9156392_15704122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.003 kcal (2) G-P(sol) polarization free energy of solvation -5.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds