Wall clock time and date at job start Tue Mar 9 2021 13:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33330 * 125.94995 * 2 1 4 4 C 1.50701 * 122.70899 * 0.02562 * 3 2 1 5 5 O 1.42894 * 109.47204 * 30.00205 * 4 3 2 6 6 Si 1.86303 * 109.46999 * 150.00033 * 4 3 2 7 7 N 1.32119 * 114.57789 * 179.82832 * 3 2 1 8 8 C 1.29691 * 116.86662 * 0.47839 * 7 3 2 9 9 N 1.38603 * 124.95113 * 179.73721 * 8 7 3 10 10 C 1.46499 * 120.00005 * 359.97438 * 9 8 7 11 11 C 1.46505 * 120.00248 * 179.97438 * 9 8 7 12 12 H 1.09003 * 109.46830 * 0.02562 * 11 9 8 13 13 C 1.52996 * 109.47077 * 119.99991 * 11 9 8 14 14 C 1.53000 * 109.47185 * 180.02562 * 13 11 9 15 15 C 1.53005 * 109.47125 * 300.00153 * 14 13 11 16 16 H 1.08997 * 109.47216 * 300.00080 * 15 14 13 17 17 O 1.42897 * 109.46988 * 179.97438 * 15 14 13 18 18 C 1.53005 * 109.47056 * 59.99899 * 15 14 13 19 19 C 1.52995 * 109.46935 * 299.99870 * 18 15 14 20 20 S 1.70975 * 110.09880 * 359.73947 * 8 7 3 21 21 H 1.09002 * 109.47152 * 179.71292 * 1 2 3 22 22 H 1.09001 * 109.46980 * 59.71392 * 1 2 3 23 23 H 1.09004 * 109.47113 * 299.71373 * 1 2 3 24 24 H 1.08997 * 109.46922 * 269.99694 * 4 3 2 25 25 H 0.96703 * 114.00558 * 59.99653 * 5 4 3 26 26 H 1.48496 * 110.00336 * 179.97438 * 6 4 3 27 27 H 1.48507 * 109.99989 * 301.32185 * 6 4 3 28 28 H 1.09005 * 109.47370 * 89.99936 * 10 9 8 29 29 H 1.09003 * 109.47457 * 209.99817 * 10 9 8 30 30 H 1.09000 * 109.47243 * 330.00029 * 10 9 8 31 31 H 1.09000 * 109.47549 * 300.00586 * 13 11 9 32 32 H 1.09003 * 109.47250 * 60.00307 * 13 11 9 33 33 H 1.08998 * 109.47127 * 180.02562 * 14 13 11 34 34 H 1.09003 * 109.46793 * 60.00007 * 14 13 11 35 35 H 0.96695 * 113.99908 * 60.00404 * 17 15 14 36 36 H 1.09000 * 109.46911 * 180.02562 * 18 15 14 37 37 H 1.09003 * 109.47357 * 59.99843 * 18 15 14 38 38 H 1.08997 * 109.47422 * 299.99871 * 19 18 15 39 39 H 1.09008 * 109.47375 * 179.97438 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7414 2.4830 0.0006 5 8 0.4816 2.5019 0.6747 6 14 2.9326 3.6148 0.8787 7 7 3.5850 0.8188 0.0036 8 6 3.9315 -0.4309 -0.0030 9 7 5.2384 -0.8926 -0.0059 10 6 6.3517 0.0597 -0.0019 11 6 5.5066 -2.3328 -0.0129 12 1 4.5627 -2.8781 -0.0155 13 6 6.3084 -2.6962 -1.2643 14 6 6.5879 -4.2004 -1.2719 15 6 7.3907 -4.5764 -0.0248 16 1 8.3346 -4.0314 -0.0224 17 8 7.6512 -5.9814 -0.0317 18 6 6.5888 -4.2130 1.2266 19 6 6.3094 -2.7088 1.2342 20 16 2.5412 -1.4261 -0.0078 21 1 -0.3633 -1.0277 -0.0051 22 1 -0.3633 0.5183 -0.8874 23 1 -0.3633 0.5094 0.8926 24 1 1.6088 2.8217 -1.0269 25 1 0.5241 2.2118 1.5962 26 1 2.4036 5.0023 0.8856 27 1 3.1465 3.1452 2.2712 28 1 6.6283 0.2911 1.0268 29 1 7.2061 -0.3779 -0.5182 30 1 6.0490 0.9747 -0.5112 31 1 5.7364 -2.4287 -2.1527 32 1 7.2522 -2.1509 -1.2621 33 1 7.1595 -4.4592 -2.1632 34 1 5.6438 -4.7453 -1.2743 35 1 8.1569 -6.2838 -0.7984 36 1 7.1609 -4.4804 2.1150 37 1 5.6448 -4.7579 1.2242 38 1 7.2533 -2.1638 1.2366 39 1 5.7377 -2.4499 2.1255 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_9156392_15704122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:40:38 Heat of formation + Delta-G solvation = -30.178190 kcal Electronic energy + Delta-G solvation = -21175.479984 eV Core-core repulsion = 18018.393786 eV Total energy + Delta-G solvation = -3157.086198 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 285.119 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.24395 -40.40197 -38.34231 -37.43034 -35.35108 -32.84538 -31.92517 -30.07453 -29.47423 -27.76426 -25.64342 -24.14642 -23.83834 -22.36930 -20.87693 -20.19270 -19.29353 -18.21524 -18.05651 -17.37718 -16.80248 -16.70860 -15.86539 -15.74538 -15.58614 -15.55554 -14.88147 -14.49303 -14.27804 -14.18090 -13.85693 -13.65084 -13.57453 -13.42058 -13.27781 -13.07974 -12.94161 -12.70486 -12.44336 -12.31658 -12.20991 -12.00948 -11.70332 -11.31262 -10.89045 -10.74005 -10.64790 -10.47615 -10.07365 -8.49914 -4.81018 -0.05545 0.10447 0.70925 1.27719 1.65834 1.69823 1.82195 1.97805 3.20173 3.27298 3.38307 3.52920 3.62583 3.92295 4.03677 4.09278 4.13894 4.18848 4.28251 4.31608 4.34264 4.44040 4.51227 4.63747 4.67620 4.75071 4.78250 4.82072 4.86814 4.98624 5.02440 5.05063 5.07311 5.08750 5.22356 5.26062 5.32843 5.74084 5.99502 6.36902 6.87336 6.88637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C -0.257 4.257 3 C 0.057 3.943 4 C -0.041 4.041 5 O -0.533 6.533 6 Si 0.784 3.216 7 N -0.552 5.552 8 C 0.313 3.687 9 N -0.576 5.576 10 C 0.094 3.906 11 C 0.152 3.848 12 H 0.079 0.921 13 C -0.121 4.121 14 C -0.144 4.144 15 C 0.102 3.898 16 H 0.068 0.932 17 O -0.589 6.589 18 C -0.111 4.111 19 C -0.117 4.117 20 S 0.096 5.904 21 H 0.063 0.937 22 H 0.072 0.928 23 H 0.085 0.915 24 H 0.132 0.868 25 H 0.384 0.616 26 H -0.291 1.291 27 H -0.306 1.306 28 H 0.055 0.945 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.395 0.605 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.086 0.914 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.249 -2.165 -2.208 5.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.380 4.380 3 C -0.073 4.073 4 C -0.153 4.153 5 O -0.340 6.340 6 Si 0.689 3.311 7 N -0.280 5.280 8 C -0.057 4.057 9 N -0.294 5.294 10 C -0.050 4.050 11 C 0.049 3.951 12 H 0.097 0.903 13 C -0.159 4.159 14 C -0.182 4.182 15 C 0.044 3.956 16 H 0.086 0.914 17 O -0.398 6.398 18 C -0.149 4.149 19 C -0.156 4.156 20 S 0.347 5.653 21 H 0.082 0.918 22 H 0.091 0.909 23 H 0.103 0.897 24 H 0.149 0.851 25 H 0.234 0.766 26 H -0.219 1.219 27 H -0.234 1.234 28 H 0.074 0.926 29 H 0.111 0.889 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.083 0.917 35 H 0.245 0.755 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.104 0.896 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.252 -2.133 -1.571 5.010 hybrid contribution -0.884 0.207 0.271 0.948 sum 3.368 -1.925 -1.299 4.092 Atomic orbital electron populations 1.20139 0.85708 1.02011 1.03679 1.25363 1.01990 0.93082 1.17546 1.20242 0.87061 0.97546 1.02440 1.24501 0.91732 0.94960 1.04104 1.86595 1.28656 1.89047 1.29660 0.92900 0.85236 0.73801 0.79132 1.65722 1.17006 1.16838 1.28429 1.23553 0.92045 0.91545 0.98538 1.46194 0.99786 1.06332 1.77125 1.21819 0.87990 0.92878 1.02302 1.21330 0.99497 0.77684 0.96609 0.90298 1.21826 1.01242 0.96255 0.96620 1.22196 1.01593 0.95428 0.98986 1.21886 0.97582 0.81550 0.94586 0.91369 1.86488 1.78480 1.23907 1.50906 1.21429 1.00624 0.95011 0.97883 1.21800 1.01270 0.95547 0.97007 1.83902 0.96438 1.10443 1.74495 0.91807 0.90890 0.89662 0.85092 0.76623 1.21857 1.23364 0.92615 0.88922 0.90574 0.91250 0.89444 0.89599 0.91680 0.75544 0.90898 0.91818 0.89568 0.91392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.08 8.90 71.24 0.63 0.55 16 2 C -0.26 -1.22 6.50 24.58 0.16 -1.06 16 3 C 0.06 0.32 5.92 41.41 0.25 0.56 16 4 C -0.04 -0.13 2.94 71.24 0.21 0.08 16 5 O -0.53 -1.59 10.18 -148.98 -1.52 -3.10 16 6 Si 0.78 2.79 32.08 68.60 2.20 4.99 16 7 N -0.55 -3.38 8.15 -189.85 -1.55 -4.92 16 8 C 0.31 1.32 7.74 179.32 1.39 2.71 16 9 N -0.58 0.26 2.87 -711.55 -2.04 -1.78 16 10 C 0.09 -0.35 9.62 127.77 1.23 0.88 16 11 C 0.15 -0.50 2.55 44.99 0.11 -0.39 16 12 H 0.08 -0.12 6.34 -2.39 -0.02 -0.13 16 13 C -0.12 0.72 5.18 30.59 0.16 0.88 16 14 C -0.14 0.86 5.55 30.60 0.17 1.03 16 15 C 0.10 -0.43 3.47 30.60 0.11 -0.32 16 16 H 0.07 -0.43 8.14 -2.39 -0.02 -0.45 16 17 O -0.59 0.56 13.32 -148.98 -1.98 -1.42 16 18 C -0.11 0.31 5.57 30.59 0.17 0.48 16 19 C -0.12 0.50 5.21 30.59 0.16 0.66 16 20 S 0.10 0.32 21.38 -56.49 -1.21 -0.89 16 21 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 22 H 0.07 0.15 8.14 -2.39 -0.02 0.13 16 23 H 0.08 -0.01 6.41 -2.38 -0.02 -0.02 16 24 H 0.13 0.18 7.96 -2.39 -0.02 0.16 16 25 H 0.38 -0.59 8.13 -74.06 -0.60 -1.19 16 26 H -0.29 -2.43 7.11 99.48 0.71 -1.73 16 27 H -0.31 -3.05 7.11 99.48 0.71 -2.35 16 28 H 0.06 -0.21 8.14 -2.38 -0.02 -0.23 16 29 H 0.09 -0.76 6.43 -2.39 -0.02 -0.78 16 30 H 0.08 -0.14 7.62 -2.39 -0.02 -0.16 16 31 H 0.07 -0.30 8.14 -2.39 -0.02 -0.31 16 32 H 0.09 -0.71 6.66 -2.39 -0.02 -0.73 16 33 H 0.09 -0.70 8.14 -2.39 -0.02 -0.72 16 34 H 0.06 -0.23 8.14 -2.39 -0.02 -0.25 16 35 H 0.39 -3.47 9.08 -74.06 -0.67 -4.14 16 36 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 37 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 38 H 0.09 -0.54 7.67 -2.39 -0.02 -0.56 16 39 H 0.07 -0.15 8.14 -2.38 -0.02 -0.17 16 Total: 0.00 -13.39 319.07 -1.52 -14.91 By element: Atomic # 1 Polarization: -13.67 SS G_CDS: -0.17 Total: -13.85 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: 4.74 Total: 6.06 kcal Atomic # 7 Polarization: -3.12 SS G_CDS: -3.59 Total: -6.70 kcal Atomic # 8 Polarization: -1.02 SS G_CDS: -3.50 Total: -4.52 kcal Atomic # 14 Polarization: 2.79 SS G_CDS: 2.20 Total: 4.99 kcal Atomic # 16 Polarization: 0.32 SS G_CDS: -1.21 Total: -0.89 kcal Total: -13.39 -1.52 -14.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_9156392_15704122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.268 kcal (2) G-P(sol) polarization free energy of solvation -13.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds