Wall clock time and date at job start Tue Mar 9 2021 13:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86300 * 109.47274 * 2 1 4 4 C 1.86308 * 109.46950 * 240.00257 * 2 1 3 5 5 C 1.86299 * 109.47149 * 120.00634 * 2 1 3 6 6 C 1.52996 * 109.47428 * 59.99534 * 5 2 1 7 7 N 1.46498 * 109.47059 * 179.97438 * 6 5 2 8 8 C 1.38620 * 119.99673 * 179.72391 * 7 6 5 9 9 N 1.29685 * 124.94853 * 0.30417 * 8 7 6 10 10 C 1.32124 * 116.86386 * 179.97438 * 9 8 7 11 11 C 1.33332 * 114.57899 * 0.02562 * 10 9 8 12 12 C 1.50699 * 125.95188 * 180.02562 * 11 10 9 13 13 O 1.42903 * 109.46552 * 299.99408 * 12 11 10 14 14 Si 1.86302 * 109.47189 * 179.97438 * 12 11 10 15 15 H 1.48502 * 109.46888 * 59.99949 * 14 12 11 16 16 H 1.48496 * 109.47095 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46929 * 299.99829 * 14 12 11 18 18 S 1.70968 * 124.94669 * 179.97438 * 8 7 6 19 19 H 1.09004 * 109.46946 * 299.99843 * 1 2 3 20 20 H 1.09003 * 109.47064 * 59.99519 * 1 2 3 21 21 H 1.09001 * 109.47362 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47172 * 179.97438 * 3 2 1 23 23 H 1.08994 * 109.47211 * 300.00231 * 3 2 1 24 24 H 1.09004 * 109.46577 * 60.00514 * 3 2 1 25 25 H 1.09001 * 109.47008 * 300.00119 * 4 2 1 26 26 H 1.09003 * 109.47055 * 60.00217 * 4 2 1 27 27 H 1.09000 * 109.46682 * 180.02562 * 4 2 1 28 28 H 1.09004 * 109.46807 * 299.99608 * 5 2 1 29 29 H 1.09000 * 109.47044 * 180.02562 * 5 2 1 30 30 H 1.09004 * 109.47066 * 60.00233 * 6 5 2 31 31 H 1.08994 * 109.46974 * 300.00380 * 6 5 2 32 32 H 0.97001 * 120.00384 * 0.02562 * 7 6 5 33 33 H 1.07996 * 122.70839 * 180.02562 * 10 9 8 34 34 H 1.08999 * 109.47212 * 59.99331 * 12 11 10 35 35 H 0.96695 * 114.00497 * 299.99839 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4839 -0.8782 -1.5213 5 6 2.4840 -0.8784 1.5210 6 6 1.9739 -2.3208 1.5210 7 7 2.4628 -3.0117 2.7168 8 6 2.1232 -4.3371 2.9389 9 7 1.3860 -5.0571 2.1516 10 6 1.1630 -6.3064 2.5194 11 6 1.7381 -6.6568 3.6701 12 6 1.6531 -8.0112 4.3253 13 8 0.2863 -8.3192 4.6068 14 14 2.6264 -7.9949 5.9138 15 1 2.0657 -6.9671 6.8273 16 1 2.5422 -9.3294 6.5597 17 1 4.0466 -7.6750 5.6208 18 16 2.6220 -5.2633 4.2867 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 3.5740 1.7564 0.0005 23 1 2.1207 2.2703 -0.8899 24 1 2.1207 2.2702 0.8901 25 1 2.1206 -1.9059 -1.5213 26 1 2.1206 -0.3643 -2.4112 27 1 3.5740 -0.8786 -1.5210 28 1 2.1207 -0.3646 2.4111 29 1 3.5740 -0.8780 1.5212 30 1 2.3373 -2.8347 0.6310 31 1 0.8840 -2.3208 1.5210 32 1 3.0205 -2.5403 3.3553 33 1 0.5634 -6.9886 1.9351 34 1 2.0650 -8.7656 3.6549 35 1 -0.1452 -7.6882 5.1989 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_9475734_15704118.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:41:07 Heat of formation + Delta-G solvation = -37.125122 kcal Electronic energy + Delta-G solvation = -15129.826411 eV Core-core repulsion = 12605.753439 eV Total energy + Delta-G solvation = -2524.072972 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 260.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.62329 -38.08777 -36.97585 -32.37565 -30.63748 -29.45312 -28.50026 -28.46936 -26.44132 -24.80931 -23.47232 -20.72244 -19.65653 -18.19489 -16.91459 -16.58911 -16.32514 -16.04782 -15.83977 -15.13407 -14.94517 -14.34491 -14.26101 -14.06758 -14.03368 -13.86414 -13.36763 -13.29162 -13.15270 -12.98424 -12.78960 -12.72832 -12.33078 -12.31721 -11.89809 -11.14378 -11.02259 -10.90789 -10.86655 -10.63901 -10.20449 -10.10439 -8.66797 0.03076 0.07066 0.72300 1.16454 1.41337 1.49288 1.58041 1.77308 1.79111 1.91149 2.10384 2.29240 2.58363 3.47890 3.79800 3.95780 4.01951 4.10575 4.58261 4.59867 4.64727 4.65937 4.69738 4.70481 4.72008 4.74820 4.80760 4.89588 5.01992 5.20253 5.40460 5.49628 5.52051 5.89731 6.11223 6.53411 7.07470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.454 4.454 2 Si 1.028 2.972 3 C -0.452 4.452 4 C -0.454 4.454 5 C -0.436 4.436 6 C 0.144 3.856 7 N -0.691 5.691 8 C 0.330 3.670 9 N -0.552 5.552 10 C 0.123 3.877 11 C -0.309 4.309 12 C -0.021 4.021 13 O -0.536 6.536 14 Si 0.900 3.100 15 H -0.238 1.238 16 H -0.231 1.231 17 H -0.237 1.237 18 S 0.064 5.936 19 H 0.068 0.932 20 H 0.070 0.930 21 H 0.070 0.930 22 H 0.068 0.932 23 H 0.071 0.929 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.414 0.586 33 H 0.178 0.822 34 H 0.124 0.876 35 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.274 2.793 0.619 3.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.562 4.562 2 Si 1.223 2.777 3 C -0.559 4.559 4 C -0.561 4.561 5 C -0.520 4.520 6 C 0.019 3.981 7 N -0.332 5.332 8 C -0.041 4.041 9 N -0.278 5.278 10 C -0.028 4.028 11 C -0.432 4.432 12 C -0.136 4.136 13 O -0.341 6.341 14 Si 0.721 3.279 15 H -0.161 1.161 16 H -0.154 1.154 17 H -0.160 1.160 18 S 0.313 5.687 19 H 0.087 0.913 20 H 0.089 0.911 21 H 0.090 0.910 22 H 0.088 0.912 23 H 0.090 0.910 24 H 0.088 0.912 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.251 0.749 33 H 0.195 0.805 34 H 0.142 0.858 35 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 2.232 2.821 1.253 3.809 hybrid contribution -0.562 0.210 -0.312 0.676 sum 1.670 3.031 0.941 3.587 Atomic orbital electron populations 1.26190 1.20766 1.04673 1.04522 0.78920 0.66917 0.66488 0.65409 1.26138 1.06283 1.18922 1.04593 1.26189 1.06262 1.08279 1.15418 1.26625 1.06695 1.01261 1.17370 1.21123 0.99312 0.90792 0.86900 1.44370 1.55901 1.06049 1.26854 1.23729 0.95203 0.91375 0.93833 1.66510 1.22278 1.06535 1.32490 1.21350 0.97479 0.90726 0.93209 1.25542 1.13244 1.00716 1.03707 1.24038 0.89548 0.92346 1.07631 1.86519 1.23384 1.53529 1.70663 0.86250 0.80550 0.83598 0.77515 1.16137 1.15368 1.16004 1.84070 1.53394 1.05618 1.25630 0.91267 0.91101 0.91045 0.91233 0.91024 0.91237 0.91048 0.91099 0.91267 0.89764 0.89753 0.91195 0.91196 0.74922 0.80508 0.85828 0.77574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.87 8.65 101.05 0.87 1.75 16 2 Si 1.03 -3.67 12.19 -169.99 -2.07 -5.75 16 3 C -0.45 1.06 8.65 101.05 0.87 1.93 16 4 C -0.45 0.87 8.65 101.05 0.87 1.74 16 5 C -0.44 1.35 4.56 37.16 0.17 1.52 16 6 C 0.14 -0.12 5.32 -4.04 -0.02 -0.14 16 7 N -0.69 -0.01 5.71 -62.30 -0.36 -0.37 16 8 C 0.33 0.73 8.09 -87.67 -0.71 0.02 16 9 N -0.55 -2.00 10.14 -15.20 -0.15 -2.16 16 10 C 0.12 0.29 11.22 -19.14 -0.21 0.08 16 11 C -0.31 -0.43 5.74 -36.02 -0.21 -0.64 16 12 C -0.02 0.00 2.99 36.00 0.11 0.11 16 13 O -0.54 -0.27 12.87 -35.23 -0.45 -0.73 16 14 Si 0.90 0.02 26.34 -169.99 -4.48 -4.45 16 15 H -0.24 -0.10 7.11 56.52 0.40 0.31 16 16 H -0.23 -0.19 7.11 56.52 0.40 0.21 16 17 H -0.24 -0.17 7.11 56.52 0.40 0.23 16 18 S 0.06 0.08 20.57 -107.50 -2.21 -2.13 16 19 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 20 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 21 H 0.07 -0.10 7.79 -51.93 -0.40 -0.51 16 22 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 23 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 24 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 25 H 0.07 -0.10 7.79 -51.93 -0.40 -0.50 16 26 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 27 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 28 H 0.08 -0.29 7.96 -51.93 -0.41 -0.71 16 29 H 0.08 -0.29 7.96 -51.93 -0.41 -0.70 16 30 H 0.07 -0.02 7.79 -51.93 -0.40 -0.42 16 31 H 0.07 -0.02 7.79 -51.93 -0.40 -0.42 16 32 H 0.41 -0.85 8.60 -40.82 -0.35 -1.20 16 33 H 0.18 0.16 8.06 -52.49 -0.42 -0.26 16 34 H 0.12 -0.12 7.96 -51.93 -0.41 -0.54 16 35 H 0.38 -0.90 8.70 45.56 0.40 -0.51 16 LS Contribution 309.18 15.07 4.66 4.66 Total: 0.00 -5.19 309.18 -8.24 -13.43 By element: Atomic # 1 Polarization: -3.95 SS G_CDS: -4.93 Total: -8.87 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: 1.75 Total: 6.37 kcal Atomic # 7 Polarization: -2.01 SS G_CDS: -0.51 Total: -2.53 kcal Atomic # 8 Polarization: -0.27 SS G_CDS: -0.45 Total: -0.73 kcal Atomic # 14 Polarization: -3.65 SS G_CDS: -6.55 Total: -10.20 kcal Atomic # 16 Polarization: 0.08 SS G_CDS: -2.21 Total: -2.13 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -5.19 -8.24 -13.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_9475734_15704118.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.694 kcal (2) G-P(sol) polarization free energy of solvation -5.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds