Wall clock time and date at job start Tue Mar 9 2021 13:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86300 * 109.47274 * 2 1 4 4 C 1.86308 * 109.46950 * 240.00257 * 2 1 3 5 5 C 1.86299 * 109.47149 * 120.00634 * 2 1 3 6 6 C 1.52996 * 109.47428 * 59.99534 * 5 2 1 7 7 N 1.46498 * 109.47059 * 179.97438 * 6 5 2 8 8 C 1.38620 * 119.99673 * 179.72391 * 7 6 5 9 9 N 1.29685 * 124.94853 * 0.30417 * 8 7 6 10 10 C 1.32124 * 116.86386 * 179.97438 * 9 8 7 11 11 C 1.33332 * 114.57899 * 0.02562 * 10 9 8 12 12 C 1.50699 * 125.95188 * 180.02562 * 11 10 9 13 13 O 1.42903 * 109.46552 * 299.99408 * 12 11 10 14 14 Si 1.86302 * 109.47189 * 179.97438 * 12 11 10 15 15 H 1.48502 * 109.46888 * 59.99949 * 14 12 11 16 16 H 1.48496 * 109.47095 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46929 * 299.99829 * 14 12 11 18 18 S 1.70968 * 124.94669 * 179.97438 * 8 7 6 19 19 H 1.09004 * 109.46946 * 299.99843 * 1 2 3 20 20 H 1.09003 * 109.47064 * 59.99519 * 1 2 3 21 21 H 1.09001 * 109.47362 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47172 * 179.97438 * 3 2 1 23 23 H 1.08994 * 109.47211 * 300.00231 * 3 2 1 24 24 H 1.09004 * 109.46577 * 60.00514 * 3 2 1 25 25 H 1.09001 * 109.47008 * 300.00119 * 4 2 1 26 26 H 1.09003 * 109.47055 * 60.00217 * 4 2 1 27 27 H 1.09000 * 109.46682 * 180.02562 * 4 2 1 28 28 H 1.09004 * 109.46807 * 299.99608 * 5 2 1 29 29 H 1.09000 * 109.47044 * 180.02562 * 5 2 1 30 30 H 1.09004 * 109.47066 * 60.00233 * 6 5 2 31 31 H 1.08994 * 109.46974 * 300.00380 * 6 5 2 32 32 H 0.97001 * 120.00384 * 0.02562 * 7 6 5 33 33 H 1.07996 * 122.70839 * 180.02562 * 10 9 8 34 34 H 1.08999 * 109.47212 * 59.99331 * 12 11 10 35 35 H 0.96695 * 114.00497 * 299.99839 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4839 -0.8782 -1.5213 5 6 2.4840 -0.8784 1.5210 6 6 1.9739 -2.3208 1.5210 7 7 2.4628 -3.0117 2.7168 8 6 2.1232 -4.3371 2.9389 9 7 1.3860 -5.0571 2.1516 10 6 1.1630 -6.3064 2.5194 11 6 1.7381 -6.6568 3.6701 12 6 1.6531 -8.0112 4.3253 13 8 0.2863 -8.3192 4.6068 14 14 2.6264 -7.9949 5.9138 15 1 2.0657 -6.9671 6.8273 16 1 2.5422 -9.3294 6.5597 17 1 4.0466 -7.6750 5.6208 18 16 2.6220 -5.2633 4.2867 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 3.5740 1.7564 0.0005 23 1 2.1207 2.2703 -0.8899 24 1 2.1207 2.2702 0.8901 25 1 2.1206 -1.9059 -1.5213 26 1 2.1206 -0.3643 -2.4112 27 1 3.5740 -0.8786 -1.5210 28 1 2.1207 -0.3646 2.4111 29 1 3.5740 -0.8780 1.5212 30 1 2.3373 -2.8347 0.6310 31 1 0.8840 -2.3208 1.5210 32 1 3.0205 -2.5403 3.3553 33 1 0.5634 -6.9886 1.9351 34 1 2.0650 -8.7656 3.6549 35 1 -0.1452 -7.6882 5.1989 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_9475734_15704118.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:41:07 Heat of formation + Delta-G solvation = -31.661211 kcal Electronic energy + Delta-G solvation = -15129.589478 eV Core-core repulsion = 12605.753439 eV Total energy + Delta-G solvation = -2523.836039 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 260.088 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.72523 -38.09564 -36.97521 -32.34947 -30.63616 -29.28569 -28.30718 -28.30686 -26.49494 -24.82383 -23.42888 -20.78828 -19.71124 -18.23824 -16.94729 -16.60829 -16.33666 -16.00938 -15.85491 -15.19948 -14.94725 -14.32288 -14.13239 -13.89664 -13.86705 -13.72491 -13.19714 -13.15596 -12.98607 -12.93761 -12.75023 -12.58790 -12.38188 -12.36467 -11.92996 -11.16351 -10.89368 -10.72355 -10.69530 -10.63584 -10.29490 -10.19490 -8.72399 -0.06927 -0.00991 0.63690 1.14860 1.39957 1.48070 1.78368 1.88248 1.97273 2.00954 2.01758 2.36387 2.74903 3.53403 3.75614 3.96635 4.12114 4.26546 4.63143 4.67607 4.72247 4.81892 4.82528 4.86288 4.87071 4.87612 4.87650 5.03932 5.05055 5.31348 5.58900 5.66999 5.67171 5.86679 6.17134 6.66689 7.00750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.473 4.473 2 Si 1.104 2.896 3 C -0.465 4.465 4 C -0.473 4.473 5 C -0.436 4.436 6 C 0.139 3.861 7 N -0.686 5.686 8 C 0.318 3.682 9 N -0.580 5.580 10 C 0.109 3.891 11 C -0.308 4.308 12 C -0.019 4.019 13 O -0.547 6.547 14 Si 0.926 3.074 15 H -0.243 1.243 16 H -0.242 1.242 17 H -0.246 1.246 18 S 0.073 5.927 19 H 0.069 0.931 20 H 0.067 0.933 21 H 0.063 0.937 22 H 0.070 0.930 23 H 0.067 0.933 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.423 0.577 33 H 0.185 0.815 34 H 0.134 0.866 35 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.664 3.169 1.108 3.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.578 4.578 2 Si 1.294 2.706 3 C -0.572 4.572 4 C -0.579 4.579 5 C -0.519 4.519 6 C 0.015 3.985 7 N -0.327 5.327 8 C -0.053 4.053 9 N -0.307 5.307 10 C -0.042 4.042 11 C -0.431 4.431 12 C -0.133 4.133 13 O -0.354 6.354 14 Si 0.748 3.252 15 H -0.166 1.166 16 H -0.165 1.165 17 H -0.170 1.170 18 S 0.322 5.678 19 H 0.088 0.912 20 H 0.086 0.914 21 H 0.082 0.918 22 H 0.090 0.910 23 H 0.086 0.914 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.113 0.887 29 H 0.112 0.888 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.262 0.738 33 H 0.202 0.798 34 H 0.152 0.848 35 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 2.615 3.214 1.738 4.493 hybrid contribution -0.697 0.102 -0.473 0.848 sum 1.918 3.317 1.265 4.035 Atomic orbital electron populations 1.26438 1.22851 1.04154 1.04400 0.77741 0.64487 0.64782 0.63613 1.26297 1.06530 1.19825 1.04532 1.26440 1.06451 1.08225 1.16736 1.26682 1.07388 0.99648 1.18174 1.21195 0.98998 0.91963 0.86389 1.44519 1.55565 1.05400 1.27206 1.23967 0.95161 0.92103 0.94048 1.66510 1.23355 1.07260 1.33530 1.21522 0.98109 0.90719 0.93823 1.25717 1.12765 1.01223 1.03427 1.24104 0.89486 0.91932 1.07757 1.86492 1.23595 1.54195 1.71125 0.85890 0.79706 0.82615 0.77005 1.16627 1.16502 1.16979 1.83972 1.53253 1.05410 1.25144 0.91201 0.91427 0.91754 0.91044 0.91386 0.91040 0.91759 0.91424 0.91213 0.88745 0.88751 0.91946 0.91927 0.73808 0.79834 0.84837 0.76246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 1.64 8.65 113.37 0.98 2.62 16 2 Si 1.10 -8.16 12.19 68.60 0.84 -7.32 16 3 C -0.47 2.46 8.65 113.37 0.98 3.44 16 4 C -0.47 1.62 8.65 113.37 0.98 2.60 16 5 C -0.44 3.03 4.56 71.98 0.33 3.36 16 6 C 0.14 -0.20 5.32 86.38 0.46 0.26 16 7 N -0.69 -0.02 5.71 -351.01 -2.01 -2.03 16 8 C 0.32 1.52 8.09 179.32 1.45 2.97 16 9 N -0.58 -4.64 10.14 -202.01 -2.05 -6.69 16 10 C 0.11 0.58 11.22 83.54 0.94 1.52 16 11 C -0.31 -0.91 5.74 24.58 0.14 -0.77 16 12 C -0.02 0.00 2.99 71.24 0.21 0.21 16 13 O -0.55 -0.43 12.87 -148.98 -1.92 -2.35 16 14 Si 0.93 -0.08 26.34 68.60 1.81 1.72 16 15 H -0.24 -0.13 7.11 99.48 0.71 0.58 16 16 H -0.24 -0.40 7.11 99.48 0.71 0.31 16 17 H -0.25 -0.34 7.11 99.48 0.71 0.37 16 18 S 0.07 0.19 20.57 -56.49 -1.16 -0.98 16 19 H 0.07 -0.25 7.96 -2.38 -0.02 -0.27 16 20 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 21 H 0.06 -0.12 7.79 -2.39 -0.02 -0.14 16 22 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 23 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 24 H 0.07 -0.38 7.96 -2.38 -0.02 -0.40 16 25 H 0.06 -0.12 7.79 -2.39 -0.02 -0.14 16 26 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 27 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 28 H 0.09 -0.79 7.96 -2.38 -0.02 -0.81 16 29 H 0.09 -0.79 7.96 -2.39 -0.02 -0.81 16 30 H 0.06 0.01 7.79 -2.38 -0.02 -0.01 16 31 H 0.06 0.01 7.79 -2.39 -0.02 -0.01 16 32 H 0.42 -1.94 8.60 -92.71 -0.80 -2.74 16 33 H 0.18 0.48 8.06 -2.91 -0.02 0.46 16 34 H 0.13 -0.31 7.96 -2.39 -0.02 -0.33 16 35 H 0.39 -1.93 8.70 -74.06 -0.64 -2.58 16 Total: 0.00 -11.73 309.18 2.37 -9.36 By element: Atomic # 1 Polarization: -8.31 SS G_CDS: 0.39 Total: -7.92 kcal Atomic # 6 Polarization: 9.73 SS G_CDS: 6.47 Total: 16.21 kcal Atomic # 7 Polarization: -4.67 SS G_CDS: -4.05 Total: -8.72 kcal Atomic # 8 Polarization: -0.43 SS G_CDS: -1.92 Total: -2.35 kcal Atomic # 14 Polarization: -8.24 SS G_CDS: 2.64 Total: -5.60 kcal Atomic # 16 Polarization: 0.19 SS G_CDS: -1.16 Total: -0.98 kcal Total: -11.73 2.37 -9.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_9475734_15704118.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.306 kcal (2) G-P(sol) polarization free energy of solvation -11.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds