Wall clock time and date at job start Tue Mar 9 2021 13:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33331 * 125.95275 * 2 1 4 4 C 1.50700 * 122.70938 * 359.97438 * 3 2 1 5 5 O 1.42900 * 109.47291 * 329.99664 * 4 3 2 6 6 Si 1.86303 * 109.47087 * 209.99762 * 4 3 2 7 7 H 1.48500 * 109.46986 * 59.99870 * 6 4 3 8 8 H 1.48502 * 109.46933 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47153 * 300.00047 * 6 4 3 10 10 N 1.32115 * 114.58076 * 179.97438 * 3 2 1 11 11 C 1.29694 * 116.86485 * 0.02562 * 10 3 2 12 12 N 1.38609 * 124.94873 * 180.02562 * 11 10 3 13 13 C 1.46493 * 120.00234 * 179.97438 * 12 11 10 14 14 C 1.52998 * 109.47643 * 180.02562 * 13 12 11 15 15 Si 1.86302 * 109.47653 * 180.02562 * 14 13 12 16 16 C 1.86303 * 109.47185 * 59.99580 * 15 14 13 17 17 C 1.86294 * 109.47368 * 180.02562 * 15 14 13 18 18 C 1.86300 * 109.46672 * 299.99922 * 15 14 13 19 19 S 1.70958 * 110.10068 * 359.97438 * 11 10 3 20 20 H 1.08991 * 109.47007 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.46856 * 300.03082 * 1 2 3 22 22 H 1.09003 * 109.46759 * 60.02612 * 1 2 3 23 23 H 1.09001 * 109.47000 * 89.99918 * 4 3 2 24 24 H 0.96698 * 113.99858 * 300.00706 * 5 4 3 25 25 H 0.97008 * 120.00299 * 359.97438 * 12 11 10 26 26 H 1.08998 * 109.47449 * 300.00154 * 13 12 11 27 27 H 1.09007 * 109.46794 * 60.00111 * 13 12 11 28 28 H 1.09012 * 109.46968 * 300.00397 * 14 13 12 29 29 H 1.08999 * 109.47209 * 59.99841 * 14 13 12 30 30 H 1.09003 * 109.46468 * 60.00338 * 16 15 14 31 31 H 1.08996 * 109.46667 * 180.02562 * 16 15 14 32 32 H 1.08997 * 109.47058 * 300.00412 * 16 15 14 33 33 H 1.09007 * 109.47205 * 59.99880 * 17 15 14 34 34 H 1.08996 * 109.47371 * 179.97438 * 17 15 14 35 35 H 1.08998 * 109.46839 * 300.00046 * 17 15 14 36 36 H 1.09005 * 109.47430 * 59.99948 * 18 15 14 37 37 H 1.08997 * 109.47444 * 179.97438 * 18 15 14 38 38 H 1.09002 * 109.47650 * 300.00014 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7415 2.4830 -0.0006 5 8 0.4817 2.5020 -0.6747 6 14 2.9328 3.6147 -0.8786 7 1 3.1134 3.1533 -2.2785 8 1 2.3921 4.9978 -0.8797 9 1 4.2420 3.5950 -0.1780 10 7 3.5851 0.8188 0.0005 11 6 3.9315 -0.4310 0.0005 12 7 5.2384 -0.8927 0.0015 13 6 5.5066 -2.3329 0.0019 14 6 7.0180 -2.5704 0.0036 15 14 7.3590 -4.4019 0.0033 16 6 6.6110 -5.1726 -1.5190 17 6 9.1994 -4.6910 0.0063 18 6 6.6073 -5.1736 1.5233 19 16 2.5413 -1.4260 0.0004 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5143 0.8898 22 1 -0.3633 0.5135 -0.8903 23 1 1.6089 2.8217 1.0270 24 1 0.5243 2.2119 -1.5962 25 1 5.9756 -0.2621 0.0019 26 1 5.0673 -2.7841 0.8915 27 1 5.0685 -2.7842 -0.8885 28 1 7.4577 -2.1191 -0.8859 29 1 7.4556 -2.1191 0.8941 30 1 7.0508 -4.7210 -2.4082 31 1 6.8102 -6.2442 -1.5188 32 1 5.5343 -5.0035 -1.5202 33 1 9.6366 -4.2402 0.8973 34 1 9.3989 -5.7625 0.0066 35 1 9.6395 -4.2393 -0.8827 36 1 5.5305 -5.0045 1.5221 37 1 6.8064 -6.2453 1.5230 38 1 7.0449 -4.7227 2.4140 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_9475734_15704122.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:41:13 Heat of formation + Delta-G solvation = -40.372058 kcal Electronic energy + Delta-G solvation = -17035.962923 eV Core-core repulsion = 14356.211534 eV Total energy + Delta-G solvation = -2679.751389 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 274.104 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.93452 -38.21172 -36.97753 -33.17171 -31.28341 -29.60951 -28.83056 -28.55633 -28.55135 -25.55178 -24.25418 -23.71433 -20.52562 -19.06074 -17.91400 -17.27725 -16.73972 -16.23252 -16.07700 -15.74560 -14.99411 -14.64001 -14.39499 -14.18552 -14.16202 -13.98274 -13.85595 -13.73070 -13.46970 -13.40001 -13.35643 -13.22267 -13.13387 -12.79980 -12.60167 -12.22464 -11.97002 -11.71478 -11.06397 -10.98517 -10.97709 -10.91573 -10.51766 -10.27922 -9.90308 -8.53807 0.10798 0.25891 0.85515 1.31500 1.43284 1.67899 1.68260 1.71501 1.79163 1.97694 2.15071 2.25678 2.50812 3.43736 3.61344 3.79794 3.92619 4.25387 4.30919 4.41664 4.59058 4.59843 4.62845 4.63576 4.64365 4.64438 4.65484 4.71909 4.87229 4.92371 5.01048 5.16236 5.34892 5.37191 5.42812 5.43861 5.65844 6.34337 6.52236 7.04117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C -0.240 4.240 3 C 0.065 3.935 4 C -0.046 4.046 5 O -0.534 6.534 6 Si 0.983 3.017 7 H -0.261 1.261 8 H -0.262 1.262 9 H -0.247 1.247 10 N -0.551 5.551 11 C 0.318 3.682 12 N -0.693 5.693 13 C 0.130 3.870 14 C -0.432 4.432 15 Si 1.025 2.975 16 C -0.454 4.454 17 C -0.451 4.451 18 C -0.454 4.454 19 S 0.098 5.902 20 H 0.057 0.943 21 H 0.076 0.924 22 H 0.081 0.919 23 H 0.124 0.876 24 H 0.376 0.624 25 H 0.412 0.588 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.460 -3.547 -0.535 3.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.363 4.363 3 C -0.066 4.066 4 C -0.159 4.159 5 O -0.339 6.339 6 Si 0.805 3.195 7 H -0.185 1.185 8 H -0.187 1.187 9 H -0.170 1.170 10 N -0.279 5.279 11 C -0.054 4.054 12 N -0.335 5.335 13 C 0.007 3.993 14 C -0.515 4.515 15 Si 1.220 2.780 16 C -0.562 4.562 17 C -0.559 4.559 18 C -0.562 4.562 19 S 0.346 5.654 20 H 0.076 0.924 21 H 0.095 0.905 22 H 0.100 0.900 23 H 0.141 0.859 24 H 0.224 0.776 25 H 0.250 0.750 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.122 -3.666 -0.378 4.252 hybrid contribution 0.100 0.480 -0.189 0.525 sum 2.222 -3.186 -0.567 3.926 Atomic orbital electron populations 1.20144 0.86329 1.01599 1.03729 1.25093 1.01269 0.92564 1.17409 1.20127 0.86824 0.97266 1.02375 1.24466 0.92487 0.95283 1.03652 1.86530 1.28939 1.89530 1.28866 0.85137 0.78063 0.76837 0.79481 1.18487 1.18669 1.16984 1.65970 1.17274 1.16797 1.27817 1.23347 0.92055 0.91474 0.98511 1.44263 1.01589 1.07463 1.80168 1.21287 0.96816 0.79285 1.01949 1.26572 0.96594 1.22375 1.05992 0.78968 0.67339 0.64374 0.67290 1.26188 1.07106 1.07539 1.15326 1.26124 1.20124 1.05102 1.04567 1.26191 1.07137 1.07543 1.15299 1.83940 0.96630 1.10722 1.74086 0.92419 0.90546 0.90020 0.85860 0.77647 0.74989 0.91271 0.91275 0.89414 0.89395 0.91138 0.90961 0.91166 0.91163 0.90970 0.91168 0.91169 0.90966 0.91131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.01 8.91 36.01 0.32 0.31 16 2 C -0.24 -0.52 6.50 -36.02 -0.23 -0.75 16 3 C 0.06 0.19 5.92 -84.18 -0.50 -0.30 16 4 C -0.05 -0.06 2.94 36.01 0.11 0.04 16 5 O -0.53 -0.26 10.17 -35.23 -0.36 -0.62 16 6 Si 0.98 1.91 27.37 -169.99 -4.65 -2.74 16 7 H -0.26 -0.76 7.11 56.52 0.40 -0.35 16 8 H -0.26 -0.64 7.11 56.52 0.40 -0.24 16 9 H -0.25 -0.90 7.11 56.52 0.40 -0.50 16 10 N -0.55 -2.27 8.95 -11.36 -0.10 -2.37 16 11 C 0.32 0.84 8.24 -87.68 -0.72 0.12 16 12 N -0.69 -0.26 5.71 -62.30 -0.36 -0.62 16 13 C 0.13 -0.26 4.90 -4.05 -0.02 -0.28 16 14 C -0.43 1.54 4.56 37.16 0.17 1.71 16 15 Si 1.03 -4.45 12.19 -169.99 -2.07 -6.52 16 16 C -0.45 1.34 8.65 101.05 0.87 2.21 16 17 C -0.45 1.26 8.65 101.05 0.87 2.13 16 18 C -0.45 1.32 8.65 101.05 0.87 2.19 16 19 S 0.10 0.14 22.32 -107.50 -2.40 -2.26 16 20 H 0.06 -0.02 8.14 -51.93 -0.42 -0.45 16 21 H 0.08 0.04 8.14 -51.93 -0.42 -0.38 16 22 H 0.08 -0.06 6.40 -51.93 -0.33 -0.40 16 23 H 0.12 0.07 7.96 -51.93 -0.41 -0.34 16 24 H 0.38 -0.87 8.13 45.56 0.37 -0.50 16 25 H 0.41 -0.09 8.60 -40.82 -0.35 -0.44 16 26 H 0.07 -0.17 7.79 -51.93 -0.40 -0.57 16 27 H 0.07 -0.17 7.79 -51.93 -0.40 -0.58 16 28 H 0.09 -0.32 7.96 -51.92 -0.41 -0.74 16 29 H 0.09 -0.32 7.96 -51.93 -0.41 -0.73 16 30 H 0.07 -0.19 7.96 -51.93 -0.41 -0.60 16 31 H 0.07 -0.19 7.96 -51.93 -0.41 -0.60 16 32 H 0.07 -0.20 7.79 -51.93 -0.40 -0.61 16 33 H 0.07 -0.18 7.96 -51.93 -0.41 -0.60 16 34 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 35 H 0.07 -0.18 7.96 -51.93 -0.41 -0.60 16 36 H 0.07 -0.20 7.79 -51.93 -0.40 -0.61 16 37 H 0.07 -0.19 7.96 -51.93 -0.41 -0.60 16 38 H 0.07 -0.19 7.96 -51.93 -0.41 -0.60 16 LS Contribution 326.17 15.07 4.92 4.92 Total: 0.00 -5.45 326.17 -8.99 -14.44 By element: Atomic # 1 Polarization: -5.91 SS G_CDS: -5.71 Total: -11.62 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 1.74 Total: 7.38 kcal Atomic # 7 Polarization: -2.53 SS G_CDS: -0.46 Total: -2.99 kcal Atomic # 8 Polarization: -0.26 SS G_CDS: -0.36 Total: -0.62 kcal Atomic # 14 Polarization: -2.53 SS G_CDS: -6.72 Total: -9.26 kcal Atomic # 16 Polarization: 0.14 SS G_CDS: -2.40 Total: -2.26 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -5.45 -8.99 -14.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_9475734_15704122.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.932 kcal (2) G-P(sol) polarization free energy of solvation -5.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds