Wall clock time and date at job start Tue Mar 9 2021 13:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33331 * 125.95275 * 2 1 4 4 C 1.50700 * 122.70938 * 359.97438 * 3 2 1 5 5 O 1.42900 * 109.47291 * 329.99664 * 4 3 2 6 6 Si 1.86303 * 109.47087 * 209.99762 * 4 3 2 7 7 H 1.48500 * 109.46986 * 59.99870 * 6 4 3 8 8 H 1.48502 * 109.46933 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47153 * 300.00047 * 6 4 3 10 10 N 1.32115 * 114.58076 * 179.97438 * 3 2 1 11 11 C 1.29694 * 116.86485 * 0.02562 * 10 3 2 12 12 N 1.38609 * 124.94873 * 180.02562 * 11 10 3 13 13 C 1.46493 * 120.00234 * 179.97438 * 12 11 10 14 14 C 1.52998 * 109.47643 * 180.02562 * 13 12 11 15 15 Si 1.86302 * 109.47653 * 180.02562 * 14 13 12 16 16 C 1.86303 * 109.47185 * 59.99580 * 15 14 13 17 17 C 1.86294 * 109.47368 * 180.02562 * 15 14 13 18 18 C 1.86300 * 109.46672 * 299.99922 * 15 14 13 19 19 S 1.70958 * 110.10068 * 359.97438 * 11 10 3 20 20 H 1.08991 * 109.47007 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.46856 * 300.03082 * 1 2 3 22 22 H 1.09003 * 109.46759 * 60.02612 * 1 2 3 23 23 H 1.09001 * 109.47000 * 89.99918 * 4 3 2 24 24 H 0.96698 * 113.99858 * 300.00706 * 5 4 3 25 25 H 0.97008 * 120.00299 * 359.97438 * 12 11 10 26 26 H 1.08998 * 109.47449 * 300.00154 * 13 12 11 27 27 H 1.09007 * 109.46794 * 60.00111 * 13 12 11 28 28 H 1.09012 * 109.46968 * 300.00397 * 14 13 12 29 29 H 1.08999 * 109.47209 * 59.99841 * 14 13 12 30 30 H 1.09003 * 109.46468 * 60.00338 * 16 15 14 31 31 H 1.08996 * 109.46667 * 180.02562 * 16 15 14 32 32 H 1.08997 * 109.47058 * 300.00412 * 16 15 14 33 33 H 1.09007 * 109.47205 * 59.99880 * 17 15 14 34 34 H 1.08996 * 109.47371 * 179.97438 * 17 15 14 35 35 H 1.08998 * 109.46839 * 300.00046 * 17 15 14 36 36 H 1.09005 * 109.47430 * 59.99948 * 18 15 14 37 37 H 1.08997 * 109.47444 * 179.97438 * 18 15 14 38 38 H 1.09002 * 109.47650 * 300.00014 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7415 2.4830 -0.0006 5 8 0.4817 2.5020 -0.6747 6 14 2.9328 3.6147 -0.8786 7 1 3.1134 3.1533 -2.2785 8 1 2.3921 4.9978 -0.8797 9 1 4.2420 3.5950 -0.1780 10 7 3.5851 0.8188 0.0005 11 6 3.9315 -0.4310 0.0005 12 7 5.2384 -0.8927 0.0015 13 6 5.5066 -2.3329 0.0019 14 6 7.0180 -2.5704 0.0036 15 14 7.3590 -4.4019 0.0033 16 6 6.6110 -5.1726 -1.5190 17 6 9.1994 -4.6910 0.0063 18 6 6.6073 -5.1736 1.5233 19 16 2.5413 -1.4260 0.0004 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5143 0.8898 22 1 -0.3633 0.5135 -0.8903 23 1 1.6089 2.8217 1.0270 24 1 0.5243 2.2119 -1.5962 25 1 5.9756 -0.2621 0.0019 26 1 5.0673 -2.7841 0.8915 27 1 5.0685 -2.7842 -0.8885 28 1 7.4577 -2.1191 -0.8859 29 1 7.4556 -2.1191 0.8941 30 1 7.0508 -4.7210 -2.4082 31 1 6.8102 -6.2442 -1.5188 32 1 5.5343 -5.0035 -1.5202 33 1 9.6366 -4.2402 0.8973 34 1 9.3989 -5.7625 0.0066 35 1 9.6395 -4.2393 -0.8827 36 1 5.5305 -5.0045 1.5221 37 1 6.8064 -6.2453 1.5230 38 1 7.0449 -4.7227 2.4140 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_9475734_15704122.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:41:12 Heat of formation + Delta-G solvation = -33.799563 kcal Electronic energy + Delta-G solvation = -17035.677918 eV Core-core repulsion = 14356.211534 eV Total energy + Delta-G solvation = -2679.466384 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 274.104 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.04664 -38.22167 -36.97208 -33.17894 -31.20960 -29.42024 -28.82642 -28.31037 -28.29552 -25.61142 -24.30919 -23.59179 -20.59662 -19.13796 -17.97880 -17.32774 -16.76992 -16.18447 -16.01937 -15.86799 -15.01079 -14.78616 -14.16108 -13.99862 -13.92743 -13.85831 -13.75751 -13.69881 -13.44657 -13.21115 -13.13360 -12.98439 -12.95254 -12.74413 -12.56835 -12.32603 -12.20637 -11.84794 -10.97053 -10.81935 -10.72425 -10.69313 -10.63274 -10.38545 -10.00646 -8.60300 -0.00954 0.16488 0.74693 1.18054 1.47956 1.59256 1.67043 1.81173 1.96828 2.01631 2.08539 2.26468 2.73322 3.42662 3.56616 3.98431 4.15390 4.21033 4.36786 4.49867 4.60027 4.82280 4.82494 4.86424 4.86531 4.88125 4.88270 4.88912 4.91216 4.96416 5.09403 5.26010 5.37307 5.58950 5.66012 5.68843 5.69789 6.32848 6.60656 6.94912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.249 4.249 3 C 0.048 3.952 4 C -0.037 4.037 5 O -0.536 6.536 6 Si 1.014 2.986 7 H -0.275 1.275 8 H -0.268 1.268 9 H -0.274 1.274 10 N -0.581 5.581 11 C 0.303 3.697 12 N -0.691 5.691 13 C 0.121 3.879 14 C -0.436 4.436 15 Si 1.104 2.896 16 C -0.471 4.471 17 C -0.470 4.470 18 C -0.472 4.472 19 S 0.118 5.882 20 H 0.064 0.936 21 H 0.073 0.927 22 H 0.092 0.908 23 H 0.130 0.870 24 H 0.388 0.612 25 H 0.413 0.587 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.041 -4.015 -0.584 4.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.372 4.372 3 C -0.082 4.082 4 C -0.151 4.151 5 O -0.343 6.343 6 Si 0.840 3.160 7 H -0.200 1.200 8 H -0.193 1.193 9 H -0.199 1.199 10 N -0.310 5.310 11 C -0.069 4.069 12 N -0.332 5.332 13 C -0.002 4.002 14 C -0.518 4.518 15 Si 1.294 2.706 16 C -0.577 4.577 17 C -0.576 4.576 18 C -0.578 4.578 19 S 0.366 5.634 20 H 0.083 0.917 21 H 0.092 0.908 22 H 0.111 0.889 23 H 0.148 0.852 24 H 0.238 0.762 25 H 0.251 0.749 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.709 -4.150 -0.438 4.509 hybrid contribution 0.280 0.581 -0.191 0.673 sum 1.989 -3.569 -0.629 4.134 Atomic orbital electron populations 1.20191 0.85130 1.02197 1.04099 1.25384 1.02194 0.92682 1.16977 1.20346 0.86778 0.98090 1.02972 1.24340 0.92419 0.94374 1.03929 1.86505 1.28300 1.89539 1.29909 0.84693 0.76704 0.76465 0.78147 1.20031 1.19280 1.19941 1.65991 1.18069 1.17789 1.29113 1.23656 0.93158 0.91593 0.98452 1.44512 1.00929 1.08423 1.79346 1.21533 0.97994 0.78103 1.02557 1.26691 0.95487 1.23230 1.06415 0.77747 0.65035 0.62688 0.65145 1.26399 1.07435 1.07589 1.16311 1.26356 1.21896 1.04891 1.04464 1.26408 1.07456 1.07601 1.16305 1.83770 0.95753 1.10023 1.73814 0.91703 0.90789 0.88947 0.85211 0.76247 0.74913 0.90680 0.90609 0.89000 0.89021 0.91290 0.91272 0.91048 0.91283 0.91310 0.91268 0.91075 0.91276 0.91318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.01 8.91 71.24 0.63 0.64 16 2 C -0.25 -1.03 6.50 24.58 0.16 -0.87 16 3 C 0.05 0.31 5.92 41.41 0.25 0.55 16 4 C -0.04 -0.11 2.94 71.24 0.21 0.10 16 5 O -0.54 -0.25 10.17 -148.98 -1.52 -1.77 16 6 Si 1.01 4.86 27.37 68.60 1.88 6.74 16 7 H -0.28 -1.88 7.11 99.48 0.71 -1.18 16 8 H -0.27 -1.43 7.11 99.48 0.71 -0.73 16 9 H -0.27 -2.52 7.11 99.48 0.71 -1.81 16 10 N -0.58 -5.22 8.95 -189.86 -1.70 -6.92 16 11 C 0.30 1.71 8.24 179.32 1.48 3.19 16 12 N -0.69 -0.66 5.71 -351.02 -2.01 -2.67 16 13 C 0.12 -0.52 4.90 86.38 0.42 -0.10 16 14 C -0.44 3.36 4.56 71.98 0.33 3.69 16 15 Si 1.10 -10.05 12.19 68.60 0.84 -9.22 16 16 C -0.47 2.91 8.65 113.37 0.98 3.89 16 17 C -0.47 2.66 8.65 113.37 0.98 3.64 16 18 C -0.47 2.85 8.65 113.37 0.98 3.84 16 19 S 0.12 0.32 22.32 -56.49 -1.26 -0.94 16 20 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 21 H 0.07 0.04 8.14 -2.38 -0.02 0.02 16 22 H 0.09 -0.23 6.40 -2.39 -0.02 -0.25 16 23 H 0.13 0.17 7.96 -2.39 -0.02 0.15 16 24 H 0.39 -2.01 8.13 -74.06 -0.60 -2.61 16 25 H 0.41 0.01 8.60 -92.70 -0.80 -0.78 16 26 H 0.08 -0.40 7.79 -2.39 -0.02 -0.42 16 27 H 0.08 -0.42 7.79 -2.38 -0.02 -0.44 16 28 H 0.09 -0.74 7.96 -2.38 -0.02 -0.76 16 29 H 0.09 -0.73 7.96 -2.39 -0.02 -0.75 16 30 H 0.07 -0.39 7.96 -2.39 -0.02 -0.41 16 31 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16 32 H 0.07 -0.45 7.79 -2.39 -0.02 -0.47 16 33 H 0.07 -0.36 7.96 -2.38 -0.02 -0.38 16 34 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 35 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16 36 H 0.07 -0.43 7.79 -2.38 -0.02 -0.45 16 37 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 38 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16 Total: 0.00 -12.56 326.17 3.06 -9.51 By element: Atomic # 1 Polarization: -13.70 SS G_CDS: 0.40 Total: -13.30 kcal Atomic # 6 Polarization: 12.15 SS G_CDS: 6.42 Total: 18.57 kcal Atomic # 7 Polarization: -5.89 SS G_CDS: -3.70 Total: -9.59 kcal Atomic # 8 Polarization: -0.25 SS G_CDS: -1.52 Total: -1.77 kcal Atomic # 14 Polarization: -5.19 SS G_CDS: 2.71 Total: -2.48 kcal Atomic # 16 Polarization: 0.32 SS G_CDS: -1.26 Total: -0.94 kcal Total: -12.56 3.06 -9.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_9475734_15704122.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.293 kcal (2) G-P(sol) polarization free energy of solvation -12.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds