Wall clock time and date at job start Tue Mar 9 2021 13:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86299 * 109.47482 * 2 1 4 4 C 1.86303 * 109.47166 * 240.00011 * 2 1 3 5 5 C 1.86305 * 109.47299 * 120.00251 * 2 1 3 6 6 C 1.53000 * 109.46854 * 59.99531 * 5 2 1 7 7 N 1.46499 * 109.46840 * 180.02562 * 6 5 2 8 8 C 1.39149 * 119.99974 * 179.97438 * 7 6 5 9 9 C 1.39302 * 119.71938 * 179.97438 * 8 7 6 10 10 F 1.35099 * 120.46725 * 0.02562 * 9 8 7 11 11 C 1.38485 * 119.06119 * 179.97438 * 9 8 7 12 12 C 1.38859 * 118.48232 * 0.02562 * 11 9 8 13 13 C 1.50702 * 120.32738 * 179.97438 * 12 11 9 14 14 O 1.42903 * 109.47088 * 300.00020 * 13 12 11 15 15 Si 1.86295 * 109.47401 * 179.97438 * 13 12 11 16 16 H 1.48505 * 109.47260 * 60.00058 * 15 13 12 17 17 H 1.48497 * 109.47464 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47323 * 300.00415 * 15 13 12 19 19 C 1.38025 * 119.34911 * 359.97438 * 12 11 9 20 20 N 1.31984 * 120.89422 * 359.74492 * 19 12 11 21 21 H 1.08998 * 109.46590 * 300.00121 * 1 2 3 22 22 H 1.09000 * 109.46936 * 59.99832 * 1 2 3 23 23 H 1.08993 * 109.46988 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47329 * 179.97438 * 3 2 1 25 25 H 1.08996 * 109.47529 * 300.00339 * 3 2 1 26 26 H 1.09001 * 109.47058 * 59.99866 * 3 2 1 27 27 H 1.08996 * 109.47221 * 300.00531 * 4 2 1 28 28 H 1.09000 * 109.47064 * 60.00236 * 4 2 1 29 29 H 1.09002 * 109.47179 * 180.02562 * 4 2 1 30 30 H 1.09001 * 109.46752 * 299.99834 * 5 2 1 31 31 H 1.08992 * 109.47445 * 179.97438 * 5 2 1 32 32 H 1.09002 * 109.47398 * 300.00393 * 6 5 2 33 33 H 1.09001 * 109.47194 * 60.00574 * 6 5 2 34 34 H 0.97000 * 120.00420 * 0.02562 * 7 6 5 35 35 H 1.08002 * 120.76026 * 179.97438 * 11 9 8 36 36 H 1.09004 * 109.47141 * 60.00161 * 13 12 11 37 37 H 0.96698 * 114.00062 * 300.00092 * 14 13 12 38 38 H 1.08000 * 119.55792 * 179.97438 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4841 -0.8783 1.5211 6 6 1.9740 -2.3208 1.5211 7 7 2.4618 -3.0112 2.7175 8 6 2.1251 -4.3432 2.9380 9 6 2.5926 -4.9942 4.0773 10 9 3.3697 -4.3414 4.9690 11 6 2.2487 -6.3198 4.2835 12 6 1.4476 -6.9504 3.3408 13 6 1.0488 -8.3922 3.5234 14 8 2.2210 -9.2078 3.5751 15 14 -0.0182 -8.9273 2.0931 16 1 0.7424 -8.7808 0.8260 17 1 -0.4118 -10.3477 2.2733 18 1 -1.2363 -8.0796 2.0398 19 6 1.0202 -6.2438 2.2348 20 7 1.3587 -4.9793 2.0662 21 1 -0.3632 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 3.5741 1.7564 0.0005 25 1 2.1208 2.2703 -0.8899 26 1 2.1208 2.2703 0.8900 27 1 2.1206 -1.9058 -1.5212 28 1 2.1207 -0.3644 -2.4111 29 1 3.5740 -0.8786 -1.5209 30 1 2.1207 -0.3644 2.4111 31 1 3.5740 -0.8787 1.5209 32 1 0.8839 -2.3207 1.5210 33 1 2.3373 -2.8346 0.6311 34 1 3.0190 -2.5397 3.3563 35 1 2.5963 -6.8512 5.1572 36 1 0.4900 -8.4996 4.4531 37 1 2.7677 -9.1617 2.7788 38 1 0.3974 -6.7311 1.4993 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_9475734_17656566.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:42:39 Heat of formation + Delta-G solvation = -88.380364 kcal Electronic energy + Delta-G solvation = -18725.723748 eV Core-core repulsion = 15640.821960 eV Total energy + Delta-G solvation = -3084.901788 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 272.122 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.81388 -41.33642 -38.27831 -36.95348 -33.38349 -32.63724 -30.35263 -29.38398 -28.48771 -28.46547 -26.35912 -25.20755 -23.15547 -22.76326 -19.33506 -18.51255 -18.26673 -17.61006 -16.99296 -16.17019 -15.98652 -15.95707 -15.87964 -15.67919 -14.71407 -14.48396 -14.34427 -14.17434 -13.99680 -13.95211 -13.85239 -13.45420 -13.35462 -13.28521 -13.14417 -12.83905 -12.70493 -12.63417 -12.19471 -12.02452 -11.25499 -10.99062 -10.89442 -10.85953 -10.65045 -10.54005 -10.42619 -8.68992 -0.02480 0.18019 1.10082 1.40062 1.46141 1.54778 1.78587 1.80722 1.87919 2.19316 2.57997 2.61013 3.11044 3.33364 3.43199 3.61943 3.86457 4.03065 4.08311 4.15506 4.48050 4.54248 4.62053 4.66149 4.67624 4.70880 4.70987 4.72492 4.74007 4.75907 4.94515 5.01315 5.11059 5.40315 5.44849 5.50192 5.52237 6.01271 6.23990 6.50813 7.01500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.453 4.453 2 Si 1.026 2.974 3 C -0.452 4.452 4 C -0.453 4.453 5 C -0.436 4.436 6 C 0.141 3.859 7 N -0.716 5.716 8 C 0.388 3.612 9 C -0.023 4.023 10 F -0.134 7.134 11 C -0.035 4.035 12 C -0.213 4.213 13 C -0.067 4.067 14 O -0.539 6.539 15 Si 0.943 3.057 16 H -0.248 1.248 17 H -0.250 1.250 18 H -0.247 1.247 19 C 0.141 3.859 20 N -0.513 5.513 21 H 0.068 0.932 22 H 0.069 0.931 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.412 0.588 35 H 0.151 0.849 36 H 0.119 0.881 37 H 0.377 0.623 38 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.476 1.087 -1.590 1.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.561 4.561 2 Si 1.221 2.779 3 C -0.559 4.559 4 C -0.561 4.561 5 C -0.520 4.520 6 C 0.018 3.982 7 N -0.349 5.349 8 C 0.149 3.851 9 C -0.049 4.049 10 F -0.113 7.113 11 C -0.061 4.061 12 C -0.219 4.219 13 C -0.178 4.178 14 O -0.344 6.344 15 Si 0.765 3.235 16 H -0.171 1.171 17 H -0.173 1.173 18 H -0.171 1.171 19 C -0.017 4.017 20 N -0.230 5.230 21 H 0.087 0.913 22 H 0.089 0.911 23 H 0.089 0.911 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.249 0.751 35 H 0.169 0.831 36 H 0.137 0.863 37 H 0.224 0.776 38 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -1.561 1.270 -2.556 3.253 hybrid contribution 1.182 0.231 1.102 1.632 sum -0.379 1.501 -1.454 2.124 Atomic orbital electron populations 1.26180 1.20762 1.04640 1.04496 0.78940 0.66928 0.66520 0.65489 1.26139 1.06290 1.18949 1.04566 1.26181 1.06258 1.08242 1.15389 1.26621 1.06637 1.01509 1.17241 1.21038 0.99187 0.90809 0.87147 1.44867 1.55887 1.07422 1.26756 1.18518 0.90950 0.86961 0.88665 1.18019 1.02705 0.92752 0.91469 1.91487 1.72669 1.80796 1.66352 1.21257 0.94217 0.91318 0.99284 1.20885 1.04795 0.98773 0.97429 1.24777 0.94044 0.86919 1.12069 1.86520 1.36824 1.66606 1.44455 0.85790 0.79383 0.81458 0.76896 1.17127 1.17331 1.17058 1.22360 0.95339 0.88976 0.95017 1.67309 1.15983 1.10413 1.29343 0.91274 0.91132 0.91051 0.91239 0.91056 0.91242 0.91062 0.91129 0.91279 0.89862 0.89866 0.91314 0.91325 0.75088 0.83144 0.86287 0.77590 0.82667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.84 8.65 101.05 0.87 1.72 16 2 Si 1.03 -3.41 12.19 -169.99 -2.07 -5.48 16 3 C -0.45 0.92 8.65 101.05 0.87 1.80 16 4 C -0.45 0.85 8.65 101.05 0.87 1.73 16 5 C -0.44 1.07 4.56 37.16 0.17 1.24 16 6 C 0.14 -0.07 5.07 -4.04 -0.02 -0.09 16 7 N -0.72 -0.61 5.71 -60.34 -0.34 -0.95 16 8 C 0.39 0.94 7.49 -154.85 -1.16 -0.22 16 9 C -0.02 -0.05 7.35 -39.09 -0.29 -0.34 16 10 F -0.13 -0.37 16.65 2.25 0.04 -0.33 16 11 C -0.03 -0.03 9.75 -39.26 -0.38 -0.42 16 12 C -0.21 -0.04 5.40 -104.47 -0.56 -0.61 16 13 C -0.07 0.08 2.83 36.01 0.10 0.18 16 14 O -0.54 0.22 12.78 -35.23 -0.45 -0.23 16 15 Si 0.94 -1.37 25.10 -169.99 -4.27 -5.63 16 16 H -0.25 0.33 7.11 56.52 0.40 0.73 16 17 H -0.25 -0.02 7.11 56.52 0.40 0.38 16 18 H -0.25 0.24 7.11 56.52 0.40 0.64 16 19 C 0.14 0.13 9.84 -17.56 -0.17 -0.04 16 20 N -0.51 -1.33 9.57 -12.36 -0.12 -1.45 16 21 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 22 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 23 H 0.07 -0.11 7.79 -51.93 -0.40 -0.51 16 24 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 25 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 26 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 27 H 0.07 -0.11 7.79 -51.93 -0.40 -0.52 16 28 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 29 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 30 H 0.08 -0.22 7.96 -51.93 -0.41 -0.63 16 31 H 0.08 -0.22 7.96 -51.93 -0.41 -0.63 16 32 H 0.07 -0.02 7.79 -51.93 -0.40 -0.42 16 33 H 0.07 -0.02 7.79 -51.93 -0.40 -0.42 16 34 H 0.41 -0.10 7.94 -40.82 -0.32 -0.42 16 35 H 0.15 -0.02 8.06 -52.49 -0.42 -0.44 16 36 H 0.12 -0.24 7.96 -51.93 -0.41 -0.65 16 37 H 0.38 -1.31 8.70 45.56 0.40 -0.92 16 38 H 0.16 -0.14 4.88 -52.49 -0.26 -0.40 16 LS Contribution 321.94 15.07 4.85 4.85 Total: 0.00 -5.04 321.94 -7.21 -12.25 By element: Atomic # 1 Polarization: -2.83 SS G_CDS: -5.16 Total: -7.98 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: 0.31 Total: 4.96 kcal Atomic # 7 Polarization: -1.94 SS G_CDS: -0.46 Total: -2.40 kcal Atomic # 8 Polarization: 0.22 SS G_CDS: -0.45 Total: -0.23 kcal Atomic # 9 Polarization: -0.37 SS G_CDS: 0.04 Total: -0.33 kcal Atomic # 14 Polarization: -4.77 SS G_CDS: -6.34 Total: -11.11 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -5.04 -7.21 -12.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_9475734_17656566.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.131 kcal (2) G-P(sol) polarization free energy of solvation -5.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds