Wall clock time and date at job start Tue Mar 9 2021 13:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86296 * 109.47225 * 2 1 4 4 C 1.50705 * 109.46934 * 239.99668 * 2 1 3 5 5 C 1.33321 * 125.95202 * 299.98084 * 4 2 1 6 6 N 1.32122 * 114.57616 * 179.75385 * 5 4 2 7 7 C 1.29685 * 116.86583 * 0.46673 * 6 5 4 8 8 N 1.38615 * 124.94804 * 179.81578 * 7 6 5 9 9 C 1.46502 * 119.99590 * 359.42541 * 8 7 6 10 10 H 1.08991 * 112.85333 * 25.32993 * 9 8 7 11 11 C 1.53787 * 113.60938 * 156.52994 * 9 8 7 12 12 C 1.53784 * 87.08143 * 89.11319 * 11 9 8 13 13 H 1.08995 * 113.61013 * 270.87954 * 12 11 9 14 14 C 1.50698 * 113.61261 * 140.06232 * 12 11 9 15 15 C 1.38235 * 119.98756 * 299.72360 * 14 12 11 16 16 C 1.38217 * 120.01074 * 179.77065 * 15 14 12 17 17 C 1.38352 * 119.98792 * 0.52573 * 16 15 14 18 18 Cl 1.73606 * 120.01434 * 179.70401 * 17 16 15 19 19 C 1.38349 * 119.97090 * 359.72891 * 17 16 15 20 20 C 1.38213 * 119.98940 * 359.97438 * 19 17 16 21 21 C 1.53782 * 113.61264 * 254.13010 * 9 8 7 22 22 S 1.70964 * 110.10148 * 359.55055 * 7 6 5 23 23 H 0.96703 * 114.00084 * 59.99816 * 1 2 3 24 24 H 1.08998 * 109.46850 * 119.99889 * 2 1 3 25 25 H 1.48494 * 110.00004 * 298.68050 * 3 2 1 26 26 H 1.48498 * 110.00292 * 60.00269 * 3 2 1 27 27 H 1.07992 * 122.71201 * 359.97438 * 5 4 2 28 28 H 0.96991 * 119.99725 * 179.69805 * 8 7 6 29 29 H 1.09001 * 113.60890 * 203.66376 * 11 9 8 30 30 H 1.08998 * 113.61781 * 334.56104 * 11 9 8 31 31 H 1.07994 * 119.99552 * 0.02562 * 15 14 12 32 32 H 1.07998 * 120.00956 * 180.25741 * 16 15 14 33 33 H 1.08005 * 120.00583 * 179.97438 * 19 17 16 34 34 H 1.08002 * 119.99336 * 180.02562 * 20 19 17 35 35 H 1.09003 * 113.60929 * 25.43667 * 21 9 8 36 36 H 1.08996 * 113.61611 * 156.33740 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2305 5 6 1.6837 -1.9790 -1.5578 6 7 2.2340 -2.3710 -2.6932 7 6 2.9424 -1.4942 -3.3345 8 7 3.5951 -1.7255 -4.5353 9 6 3.5225 -3.0458 -5.1660 10 1 2.6302 -3.6027 -4.8805 11 6 3.7724 -3.0182 -6.6832 12 6 5.2657 -3.1953 -6.3610 13 1 5.7961 -2.2539 -6.2184 14 6 5.9790 -4.1324 -7.3011 15 6 5.5704 -5.4488 -7.4064 16 6 6.2213 -6.3076 -8.2721 17 6 7.2888 -5.8523 -9.0252 18 17 8.1117 -6.9323 -10.1070 19 6 7.7006 -4.5360 -8.9155 20 6 7.0451 -3.6766 -8.0541 21 6 4.8218 -3.8592 -5.0437 22 16 2.9477 -0.0095 -2.4869 23 1 -0.3933 0.4417 -0.7650 24 1 1.7923 -0.5138 0.8900 25 1 1.5879 2.4585 -1.2242 26 1 1.5616 2.4679 1.2085 27 1 1.0791 -2.6322 -0.9461 28 1 4.1032 -1.0143 -4.9558 29 1 3.3365 -3.8653 -7.2129 30 1 3.5364 -2.0606 -7.1473 31 1 4.7399 -5.8053 -6.8153 32 1 5.8994 -7.3349 -8.3574 33 1 8.5342 -4.1801 -9.5028 34 1 7.3662 -2.6490 -7.9686 35 1 5.4325 -3.5800 -4.1850 36 1 4.6724 -4.9357 -5.1260 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_9610466_15704118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:42:51 Heat of formation + Delta-G solvation = 73.322972 kcal Electronic energy + Delta-G solvation = -21136.749715 eV Core-core repulsion = 17741.204739 eV Total energy + Delta-G solvation = -3395.544975 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 323.049 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.41773 -40.57287 -39.32166 -37.98086 -37.38225 -35.20383 -32.08357 -31.83883 -30.94364 -26.91133 -26.64477 -26.05479 -24.53624 -23.82517 -22.71225 -21.24832 -20.09450 -19.49747 -18.36304 -18.08260 -17.11977 -16.80080 -16.47102 -16.29307 -16.20642 -15.85403 -15.61044 -15.17406 -15.00519 -14.73301 -14.56879 -14.34728 -13.93922 -13.69803 -13.46416 -13.26623 -12.88531 -12.61864 -12.51157 -12.45358 -12.07907 -11.94363 -11.76234 -11.70552 -11.22919 -11.04533 -10.90246 -10.27713 -10.19493 -10.01309 -9.50057 -8.72293 -5.03225 -0.05460 0.03037 0.12545 0.32097 0.67640 1.16560 1.26228 1.55257 1.89435 1.97498 2.16798 2.59275 3.38941 3.45238 3.61880 3.70945 3.73856 3.86105 3.93454 3.94803 3.98799 4.23421 4.36389 4.44569 4.58159 4.63808 4.72157 4.73333 4.79937 4.81896 4.92730 5.03468 5.05265 5.09879 5.23762 5.27528 5.31655 5.61344 5.84144 5.89832 6.17960 6.44554 7.02633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.022 4.022 3 Si 0.724 3.276 4 C -0.306 4.306 5 C 0.104 3.896 6 N -0.577 5.577 7 C 0.317 3.683 8 N -0.667 5.667 9 C 0.135 3.865 10 H 0.090 0.910 11 C -0.126 4.126 12 C -0.066 4.066 13 H 0.113 0.887 14 C -0.067 4.067 15 C -0.108 4.108 16 C -0.118 4.118 17 C -0.056 4.056 18 Cl -0.083 7.083 19 C -0.119 4.119 20 C -0.107 4.107 21 C -0.142 4.142 22 S 0.116 5.884 23 H 0.386 0.614 24 H 0.134 0.866 25 H -0.266 1.266 26 H -0.276 1.276 27 H 0.177 0.823 28 H 0.425 0.575 29 H 0.102 0.898 30 H 0.086 0.914 31 H 0.147 0.853 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.151 0.849 35 H 0.067 0.933 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.118 3.112 -0.728 3.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.135 4.135 3 Si 0.626 3.374 4 C -0.429 4.429 5 C -0.047 4.047 6 N -0.303 5.303 7 C -0.053 4.053 8 N -0.307 5.307 9 C 0.027 3.973 10 H 0.108 0.892 11 C -0.165 4.165 12 C -0.084 4.084 13 H 0.131 0.869 14 C -0.068 4.068 15 C -0.126 4.126 16 C -0.137 4.137 17 C -0.083 4.083 18 Cl -0.055 7.055 19 C -0.137 4.137 20 C -0.125 4.125 21 C -0.181 4.181 22 S 0.366 5.634 23 H 0.235 0.765 24 H 0.152 0.848 25 H -0.192 1.192 26 H -0.202 1.202 27 H 0.194 0.806 28 H 0.265 0.735 29 H 0.121 0.879 30 H 0.105 0.895 31 H 0.165 0.835 32 H 0.157 0.843 33 H 0.157 0.843 34 H 0.168 0.832 35 H 0.086 0.914 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.446 3.838 -0.763 4.615 hybrid contribution -1.207 -0.889 -0.369 1.544 sum 1.240 2.949 -1.132 3.393 Atomic orbital electron populations 1.86589 1.18224 1.80254 1.50013 1.24270 0.82984 1.10330 0.95910 0.94414 0.90569 0.73255 0.79146 1.25624 1.13265 0.99016 1.05029 1.21437 0.97725 0.93690 0.91882 1.66473 1.18019 1.34758 1.11034 1.23925 0.94852 0.93788 0.92756 1.43744 1.53972 1.14208 1.18757 1.21846 0.98872 0.83161 0.93397 0.89204 1.23409 0.94397 1.04293 0.94362 1.21671 0.95090 0.98130 0.93558 0.86921 1.19986 0.95558 0.94392 0.96820 1.21205 1.00318 0.92977 0.98056 1.21257 0.94856 1.01384 0.96201 1.21177 0.97595 0.92256 0.97246 1.98382 1.78454 1.64844 1.63795 1.21278 1.01031 0.91569 0.99845 1.21309 0.95207 1.00627 0.95354 1.23634 0.96876 1.00581 0.97002 1.83844 1.50780 1.12345 1.16451 0.76456 0.84801 1.19172 1.20168 0.80585 0.73540 0.87933 0.89539 0.83495 0.84343 0.84256 0.83154 0.91443 0.88401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.09 12.87 -148.98 -1.92 -3.00 16 2 C -0.02 0.02 2.99 71.24 0.21 0.23 16 3 Si 0.72 -1.31 31.05 68.60 2.13 0.82 16 4 C -0.31 -0.22 5.74 24.58 0.14 -0.07 16 5 C 0.10 0.37 11.22 83.54 0.94 1.31 16 6 N -0.58 -3.02 9.85 -202.03 -1.99 -5.01 16 7 C 0.32 0.32 8.09 179.32 1.45 1.77 16 8 N -0.67 2.66 5.42 -327.89 -1.78 0.88 16 9 C 0.14 -0.57 4.42 45.52 0.20 -0.37 16 10 H 0.09 -0.01 7.69 -2.39 -0.02 -0.03 16 11 C -0.13 0.93 7.29 31.12 0.23 1.16 16 12 C -0.07 0.47 3.86 -10.92 -0.04 0.43 16 13 H 0.11 -1.08 8.09 -2.39 -0.02 -1.10 16 14 C -0.07 0.24 5.29 -19.86 -0.11 0.14 16 15 C -0.11 0.28 8.63 22.26 0.19 0.47 16 16 C -0.12 -0.03 9.83 22.29 0.22 0.19 16 17 C -0.06 -0.13 6.32 22.32 0.14 0.01 16 18 Cl -0.08 -0.32 28.96 -2.72 -0.08 -0.40 16 19 C -0.12 0.00 9.83 22.29 0.22 0.22 16 20 C -0.11 0.32 9.71 22.27 0.22 0.53 16 21 C -0.14 0.70 7.27 31.21 0.23 0.93 16 22 S 0.12 -0.18 20.57 -56.49 -1.16 -1.34 16 23 H 0.39 -1.22 8.70 -74.06 -0.64 -1.86 16 24 H 0.13 -0.38 7.96 -2.39 -0.02 -0.40 16 25 H -0.27 -0.49 7.11 99.48 0.71 0.21 16 26 H -0.28 -1.25 7.11 99.48 0.71 -0.54 16 27 H 0.18 0.35 8.06 -2.91 -0.02 0.33 16 28 H 0.42 -3.73 8.83 -92.71 -0.82 -4.54 16 29 H 0.10 -0.75 7.73 -2.39 -0.02 -0.76 16 30 H 0.09 -0.73 8.14 -2.39 -0.02 -0.75 16 31 H 0.15 -0.89 6.65 -2.91 -0.02 -0.91 16 32 H 0.14 -0.23 8.06 -2.91 -0.02 -0.25 16 33 H 0.14 -0.29 8.06 -2.91 -0.02 -0.32 16 34 H 0.15 -1.12 8.05 -2.91 -0.02 -1.14 16 35 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 36 H 0.10 -0.51 6.31 -2.39 -0.02 -0.53 16 Total: 0.00 -13.05 333.90 -0.85 -13.89 By element: Atomic # 1 Polarization: -12.50 SS G_CDS: -0.29 Total: -12.80 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: 4.24 Total: 6.95 kcal Atomic # 7 Polarization: -0.36 SS G_CDS: -3.77 Total: -4.13 kcal Atomic # 8 Polarization: -1.09 SS G_CDS: -1.92 Total: -3.00 kcal Atomic # 14 Polarization: -1.31 SS G_CDS: 2.13 Total: 0.82 kcal Atomic # 16 Polarization: -0.18 SS G_CDS: -1.16 Total: -1.34 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -0.08 Total: -0.40 kcal Total: -13.05 -0.85 -13.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_9610466_15704118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.217 kcal (2) G-P(sol) polarization free energy of solvation -13.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds