Wall clock time and date at job start Tue Mar 9 2021 13:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33332 * 125.94954 * 2 1 4 4 C 1.50699 * 122.71213 * 0.02562 * 3 2 1 5 5 O 1.42900 * 109.46763 * 330.00371 * 4 3 2 6 6 Si 1.86301 * 109.47112 * 210.00203 * 4 3 2 7 7 N 1.32115 * 114.57580 * 180.02562 * 3 2 1 8 8 C 1.29688 * 116.87094 * 359.97438 * 7 3 2 9 9 N 1.38609 * 124.95101 * 179.97438 * 8 7 3 10 10 C 1.46501 * 119.99947 * 179.97438 * 9 8 7 11 11 H 1.09000 * 112.84825 * 25.34156 * 10 9 8 12 12 C 1.53782 * 113.61577 * 156.53432 * 10 9 8 13 13 C 1.53781 * 87.08056 * 89.11688 * 12 10 9 14 14 H 1.08998 * 113.61351 * 270.80071 * 13 12 10 15 15 C 1.50694 * 113.61058 * 139.98154 * 13 12 10 16 16 C 1.38240 * 119.99130 * 299.72328 * 15 13 12 17 17 C 1.38219 * 120.01487 * 179.76716 * 16 15 13 18 18 C 1.38344 * 119.98446 * 0.48931 * 17 16 15 19 19 Cl 1.73603 * 120.01311 * 179.74511 * 18 17 16 20 20 C 1.38350 * 119.97965 * 359.76851 * 18 17 16 21 21 C 1.38217 * 119.98307 * 359.97438 * 20 18 17 22 22 C 1.53783 * 113.61858 * 254.13990 * 10 9 8 23 23 S 1.70966 * 110.09929 * 359.73162 * 8 7 3 24 24 H 1.09002 * 109.47152 * 90.00172 * 1 2 3 25 25 H 1.09001 * 109.46980 * 330.00272 * 1 2 3 26 26 H 1.09004 * 109.47113 * 210.00253 * 1 2 3 27 27 H 1.08995 * 109.47264 * 89.99891 * 4 3 2 28 28 H 0.96699 * 114.00321 * 299.99423 * 5 4 3 29 29 H 1.48498 * 109.99673 * 58.68137 * 6 4 3 30 30 H 1.48498 * 109.99728 * 179.97438 * 6 4 3 31 31 H 0.96999 * 120.00058 * 0.02562 * 9 8 7 32 32 H 1.08997 * 113.61341 * 203.67025 * 12 10 9 33 33 H 1.09007 * 113.60965 * 334.57119 * 12 10 9 34 34 H 1.08000 * 119.99271 * 0.02562 * 16 15 13 35 35 H 1.07995 * 120.00747 * 180.25423 * 17 16 15 36 36 H 1.07996 * 120.01252 * 179.97438 * 20 18 17 37 37 H 1.08001 * 119.99499 * 180.02562 * 21 20 18 38 38 H 1.09004 * 113.61055 * 25.43541 * 22 10 9 39 39 H 1.09001 * 113.61518 * 156.33068 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0794 0.0000 4 6 1.7414 2.4831 0.0006 5 8 0.4810 2.5022 -0.6725 6 14 2.9320 3.6152 -0.8779 7 7 3.5850 0.8188 -0.0005 8 6 3.9315 -0.4309 -0.0005 9 7 5.2385 -0.8925 -0.0015 10 6 5.5066 -2.3328 -0.0007 11 1 4.6911 -2.9153 -0.4294 12 6 6.8894 -2.7023 -0.5630 13 6 7.4262 -2.5476 0.8698 14 1 7.7529 -1.5351 1.1068 15 6 8.4415 -3.5942 1.2502 16 6 8.0927 -4.9318 1.2385 17 6 9.0249 -5.8925 1.5827 18 6 10.3044 -5.5145 1.9488 19 17 11.4739 -6.7201 2.3876 20 6 10.6515 -4.1754 1.9655 21 6 9.7199 -3.2160 1.6160 22 6 5.9993 -2.8671 1.3545 23 16 2.5413 -1.4260 0.0078 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 0.8900 0.5138 26 1 -0.3633 -0.8900 0.5139 27 1 1.6096 2.8212 1.0283 28 1 0.5229 2.2127 -1.5942 29 1 3.1447 3.1464 -2.2707 30 1 2.4024 5.0025 -0.8847 31 1 5.9756 -0.2620 -0.0019 32 1 6.9478 -3.7220 -0.9435 33 1 7.2882 -1.9656 -1.2605 34 1 7.0927 -5.2266 0.9564 35 1 8.7534 -6.9377 1.5696 36 1 11.6500 -3.8797 2.2515 37 1 9.9908 -2.1706 1.6285 38 1 5.6798 -2.2634 2.2040 39 1 5.8147 -3.9318 1.4974 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_9610466_15704122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:42:54 Heat of formation + Delta-G solvation = 70.534695 kcal Electronic energy + Delta-G solvation = -23188.196957 eV Core-core repulsion = 19636.993453 eV Total energy + Delta-G solvation = -3551.203503 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 337.064 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.43455 -40.93590 -39.44881 -37.88535 -37.37138 -35.30006 -32.69479 -32.05853 -31.38926 -29.21054 -26.72046 -26.20543 -25.53687 -24.37561 -23.81097 -22.71592 -20.81299 -20.33648 -18.84044 -18.35008 -18.00897 -17.43414 -16.75953 -16.70558 -16.30188 -16.19694 -15.74502 -15.54373 -15.21967 -14.79421 -14.60025 -14.37327 -14.28798 -14.11082 -13.81612 -13.57842 -13.47064 -13.40459 -13.21919 -12.82829 -12.62166 -12.50552 -12.41822 -12.00013 -11.97389 -11.71959 -11.65218 -11.26421 -11.01785 -10.65613 -10.47249 -10.03794 -10.00190 -9.49357 -8.62253 -4.78859 -0.02584 0.13285 0.16293 0.33011 0.74597 1.17592 1.29779 1.66919 1.82457 1.90201 1.99750 2.60007 3.28771 3.40725 3.49965 3.61533 3.67061 3.84462 3.95392 3.95763 4.15056 4.20823 4.33313 4.36115 4.40879 4.48275 4.55669 4.73659 4.77714 4.79158 4.79813 4.90018 4.92414 5.03731 5.06865 5.07506 5.19343 5.27576 5.28903 5.31973 5.59831 5.74260 5.85286 6.30848 6.44275 6.92702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.257 4.257 3 C 0.056 3.944 4 C -0.041 4.041 5 O -0.533 6.533 6 Si 0.781 3.219 7 N -0.559 5.559 8 C 0.314 3.686 9 N -0.669 5.669 10 C 0.122 3.878 11 H 0.100 0.900 12 C -0.123 4.123 13 C -0.069 4.069 14 H 0.108 0.892 15 C -0.067 4.067 16 C -0.106 4.106 17 C -0.118 4.118 18 C -0.057 4.057 19 Cl -0.084 7.084 20 C -0.120 4.120 21 C -0.109 4.109 22 C -0.144 4.144 23 S 0.119 5.881 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.065 0.935 27 H 0.132 0.868 28 H 0.384 0.616 29 H -0.306 1.306 30 H -0.293 1.293 31 H 0.418 0.582 32 H 0.111 0.889 33 H 0.084 0.916 34 H 0.154 0.846 35 H 0.140 0.860 36 H 0.137 0.863 37 H 0.147 0.853 38 H 0.071 0.929 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.474 -2.142 -0.285 2.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.380 4.380 3 C -0.074 4.074 4 C -0.154 4.154 5 O -0.339 6.339 6 Si 0.687 3.313 7 N -0.286 5.286 8 C -0.057 4.057 9 N -0.309 5.309 10 C 0.016 3.984 11 H 0.118 0.882 12 C -0.161 4.161 13 C -0.087 4.087 14 H 0.126 0.874 15 C -0.067 4.067 16 C -0.123 4.123 17 C -0.136 4.136 18 C -0.083 4.083 19 Cl -0.056 7.056 20 C -0.138 4.138 21 C -0.127 4.127 22 C -0.183 4.183 23 S 0.368 5.632 24 H 0.094 0.906 25 H 0.104 0.896 26 H 0.084 0.916 27 H 0.149 0.851 28 H 0.234 0.766 29 H -0.233 1.233 30 H -0.221 1.221 31 H 0.258 0.742 32 H 0.129 0.871 33 H 0.103 0.897 34 H 0.171 0.829 35 H 0.158 0.842 36 H 0.155 0.845 37 H 0.165 0.835 38 H 0.089 0.911 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.783 -2.384 -0.330 2.531 hybrid contribution -0.332 0.323 -0.556 0.723 sum 0.452 -2.061 -0.885 2.288 Atomic orbital electron populations 1.20202 0.85760 1.03180 1.03052 1.25385 1.02116 0.93353 1.17172 1.20209 0.87023 0.97524 1.02620 1.24474 0.91741 0.95093 1.04063 1.86584 1.28506 1.89157 1.29696 0.92919 0.85347 0.73788 0.79204 1.65718 1.17243 1.17222 1.28432 1.23489 0.92676 0.91402 0.98147 1.43702 1.01121 1.06941 1.79113 1.22074 0.99097 0.79034 0.98166 0.88250 1.23396 0.92729 1.04110 0.95895 1.21649 0.92464 0.97841 0.96747 0.87415 1.19967 0.94512 0.94468 0.97739 1.21231 1.00156 0.91772 0.99180 1.21276 0.91407 1.01466 0.99471 1.21186 0.91740 0.90368 1.05018 1.98383 1.58996 1.56580 1.91600 1.21262 1.01260 0.90870 1.00450 1.21303 0.92673 1.00229 0.98495 1.23727 0.94456 1.02978 0.97131 1.83835 0.95802 1.09683 1.73849 0.90562 0.89570 0.91627 0.85051 0.76621 1.23299 1.22122 0.74246 0.87072 0.89700 0.82885 0.84172 0.84491 0.83528 0.91051 0.87247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.01 8.95 71.24 0.64 0.64 16 2 C -0.26 -0.73 6.50 24.58 0.16 -0.57 16 3 C 0.06 0.23 5.92 41.41 0.25 0.48 16 4 C -0.04 -0.09 2.83 71.24 0.20 0.11 16 5 O -0.53 -1.11 9.89 -148.98 -1.47 -2.58 16 6 Si 0.78 2.35 32.08 68.60 2.20 4.56 16 7 N -0.56 -2.48 8.95 -189.86 -1.70 -4.18 16 8 C 0.31 0.42 8.24 179.32 1.48 1.90 16 9 N -0.67 2.74 5.42 -327.89 -1.78 0.96 16 10 C 0.12 -0.94 4.28 45.52 0.19 -0.75 16 11 H 0.10 -0.78 7.11 -2.39 -0.02 -0.79 16 12 C -0.12 1.18 7.29 31.12 0.23 1.40 16 13 C -0.07 0.58 3.87 -10.93 -0.04 0.54 16 14 H 0.11 -0.99 8.09 -2.39 -0.02 -1.01 16 15 C -0.07 0.33 5.29 -19.86 -0.11 0.22 16 16 C -0.11 0.50 8.62 22.27 0.19 0.69 16 17 C -0.12 0.15 9.83 22.29 0.22 0.37 16 18 C -0.06 -0.08 6.32 22.32 0.14 0.06 16 19 Cl -0.08 -0.27 28.96 -2.72 -0.08 -0.35 16 20 C -0.12 0.04 9.83 22.29 0.22 0.26 16 21 C -0.11 0.35 9.71 22.27 0.22 0.57 16 22 C -0.14 1.18 7.27 31.21 0.23 1.41 16 23 S 0.12 0.03 21.71 -56.49 -1.23 -1.20 16 24 H 0.08 -0.14 8.14 -2.39 -0.02 -0.16 16 25 H 0.09 0.10 6.61 -2.39 -0.02 0.09 16 26 H 0.06 -0.09 8.14 -2.38 -0.02 -0.10 16 27 H 0.13 0.07 7.96 -2.39 -0.02 0.05 16 28 H 0.38 -0.92 8.68 -74.06 -0.64 -1.56 16 29 H -0.31 -2.83 7.11 99.48 0.71 -2.13 16 30 H -0.29 -2.40 7.11 99.48 0.71 -1.69 16 31 H 0.42 -2.43 8.83 -92.71 -0.82 -3.25 16 32 H 0.11 -1.18 7.73 -2.39 -0.02 -1.20 16 33 H 0.08 -0.79 8.14 -2.38 -0.02 -0.81 16 34 H 0.15 -1.46 6.64 -2.91 -0.02 -1.48 16 35 H 0.14 -0.48 8.06 -2.91 -0.02 -0.50 16 36 H 0.14 -0.27 8.06 -2.91 -0.02 -0.30 16 37 H 0.15 -1.02 8.05 -2.91 -0.02 -1.04 16 38 H 0.07 -0.39 8.14 -2.39 -0.02 -0.41 16 39 H 0.11 -1.10 6.30 -2.39 -0.02 -1.11 16 Total: 0.00 -12.71 350.67 -0.16 -12.88 By element: Atomic # 1 Polarization: -17.09 SS G_CDS: -0.32 Total: -17.41 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: 4.21 Total: 7.33 kcal Atomic # 7 Polarization: 0.26 SS G_CDS: -3.48 Total: -3.22 kcal Atomic # 8 Polarization: -1.11 SS G_CDS: -1.47 Total: -2.58 kcal Atomic # 14 Polarization: 2.35 SS G_CDS: 2.20 Total: 4.56 kcal Atomic # 16 Polarization: 0.03 SS G_CDS: -1.23 Total: -1.20 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -0.08 Total: -0.35 kcal Total: -12.71 -0.16 -12.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_9610466_15704122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.411 kcal (2) G-P(sol) polarization free energy of solvation -12.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds