Wall clock time and date at job start Tue Mar 9 2021 13:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86292 * 109.47175 * 2 1 4 4 C 1.86304 * 109.47175 * 239.99928 * 2 1 3 5 5 C 1.86796 * 109.47345 * 120.00283 * 2 1 3 6 6 C 1.38233 * 120.00338 * 89.99399 * 5 2 1 7 7 C 1.38234 * 120.00037 * 179.72477 * 6 5 2 8 8 C 1.38234 * 120.00240 * 0.26327 * 7 6 5 9 9 C 1.50700 * 120.00260 * 179.97438 * 8 7 6 10 10 N 1.46500 * 109.47047 * 89.99944 * 9 8 7 11 11 C 1.38405 * 119.99939 * 180.02562 * 10 9 8 12 12 N 1.32491 * 119.21525 * 359.72841 * 11 10 9 13 13 C 1.32284 * 120.73764 * 179.72050 * 12 11 10 14 14 C 1.38604 * 119.19456 * 0.54464 * 13 12 11 15 15 C 1.50703 * 120.72157 * 179.71131 * 14 13 12 16 16 O 1.42902 * 109.47219 * 245.02299 * 15 14 13 17 17 Si 1.86297 * 109.46911 * 5.02063 * 15 14 13 18 18 H 1.48500 * 109.47193 * 60.00134 * 17 15 14 19 19 H 1.48499 * 109.47477 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47356 * 300.00009 * 17 15 14 21 21 C 1.38609 * 118.56100 * 359.73081 * 14 13 12 22 22 N 1.32273 * 119.19767 * 0.02562 * 21 14 13 23 23 C 1.38238 * 119.99693 * 0.02562 * 8 7 6 24 24 C 1.38234 * 120.00047 * 359.95697 * 23 8 7 25 25 H 1.08998 * 109.47461 * 299.99862 * 1 2 3 26 26 H 1.08995 * 109.47041 * 60.00323 * 1 2 3 27 27 H 1.09000 * 109.46941 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47556 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.47107 * 299.99920 * 3 2 1 30 30 H 1.09001 * 109.47298 * 60.00299 * 3 2 1 31 31 H 1.09004 * 109.47045 * 300.00301 * 4 2 1 32 32 H 1.09003 * 109.47110 * 60.00078 * 4 2 1 33 33 H 1.09000 * 109.47158 * 180.02562 * 4 2 1 34 34 H 1.08002 * 120.00157 * 0.02562 * 6 5 2 35 35 H 1.07999 * 120.00009 * 180.28389 * 7 6 5 36 36 H 1.08999 * 109.47240 * 210.00239 * 9 8 7 37 37 H 1.08999 * 109.46861 * 329.99859 * 9 8 7 38 38 H 0.97003 * 119.99859 * 0.02562 * 10 9 8 39 39 H 1.07989 * 120.40243 * 180.25384 * 13 12 11 40 40 H 1.08993 * 109.47416 * 125.02065 * 15 14 13 41 41 H 0.96708 * 114.00012 * 59.99618 * 16 15 14 42 42 H 1.08002 * 120.40274 * 179.97438 * 21 14 13 43 43 H 1.08001 * 119.99658 * 179.97438 * 23 8 7 44 44 H 1.07999 * 119.99990 * 180.02562 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4857 -0.8806 1.5251 6 6 2.7160 -2.2432 1.4909 7 6 3.1823 -2.8939 2.6179 8 6 3.4130 -2.1829 3.7807 9 6 3.9208 -2.8924 5.0095 10 7 5.3858 -2.8873 5.0060 11 6 6.0824 -3.4854 6.0417 12 7 5.4086 -4.0531 7.0312 13 6 6.0438 -4.6381 8.0333 14 6 7.4298 -4.6420 8.0450 15 6 8.1883 -5.2927 9.1730 16 8 8.9175 -4.2971 9.8935 17 14 6.9892 -6.1371 10.3219 18 1 6.2314 -7.1718 9.5732 19 1 7.7365 -6.7778 11.4337 20 1 6.0437 -5.1343 10.8748 21 6 8.1030 -4.0341 6.9970 22 7 7.4072 -3.4713 6.0230 23 6 3.1770 -0.8213 3.8167 24 6 2.7111 -0.1706 2.6896 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.5739 1.7564 -0.0005 29 1 2.1206 2.2702 -0.8900 30 1 2.1207 2.2702 0.8900 31 1 2.1206 -1.9059 -1.5212 32 1 2.1207 -0.3644 -2.4112 33 1 3.5740 -0.8787 -1.5209 34 1 2.5363 -2.7986 0.5823 35 1 3.3666 -3.9577 2.5898 36 1 3.5578 -2.3804 5.9007 37 1 3.5610 -3.9212 5.0097 38 1 5.8676 -2.4648 4.2777 39 1 5.4892 -5.1027 8.8350 40 1 8.8822 -6.0288 8.7672 41 1 8.3622 -3.6079 10.2832 42 1 9.1828 -4.0194 6.9763 43 1 3.3569 -0.2659 4.7253 44 1 2.5271 0.8932 2.7176 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_9630642_12175864.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:43:00 Heat of formation + Delta-G solvation = 3.085201 kcal Electronic energy + Delta-G solvation = -22829.424774 eV Core-core repulsion = 19484.075114 eV Total energy + Delta-G solvation = -3345.349660 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.04345 -40.24157 -38.19864 -36.79383 -34.67564 -33.35081 -31.92574 -31.49272 -29.59497 -28.48164 -28.44766 -27.50225 -26.12166 -25.39456 -23.51102 -23.10187 -22.07773 -19.57780 -18.69890 -18.15095 -17.48704 -16.72080 -16.38317 -16.26242 -16.13617 -15.81355 -15.58739 -15.52712 -14.76712 -14.42618 -14.31152 -14.27666 -14.15202 -14.04762 -14.01941 -13.80637 -13.55052 -13.29778 -13.28969 -13.14277 -13.13908 -12.69670 -12.27056 -12.22632 -12.03542 -11.79059 -11.68395 -11.34256 -11.08332 -10.94448 -10.87242 -10.59134 -9.97312 -9.83511 -9.72918 -9.08167 0.08906 0.13396 0.19638 0.49366 1.09120 1.36614 1.44432 1.66363 1.79982 1.80974 1.86340 2.03737 2.50416 2.86310 2.90722 3.16221 3.42596 3.61826 3.70000 3.74069 3.84980 3.87946 4.08469 4.21817 4.36427 4.46386 4.56907 4.64344 4.65440 4.66608 4.68163 4.71851 4.72398 4.73245 4.74921 4.75369 4.97296 5.11832 5.22200 5.35858 5.42305 5.46554 5.50516 5.58135 5.60254 5.77583 6.01764 6.07384 6.43962 6.49262 7.32311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.060 2.940 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.361 4.361 6 C -0.091 4.091 7 C -0.109 4.109 8 C -0.104 4.104 9 C 0.178 3.822 10 N -0.691 5.691 11 C 0.567 3.433 12 N -0.563 5.563 13 C 0.192 3.808 14 C -0.296 4.296 15 C -0.058 4.058 16 O -0.539 6.539 17 Si 0.939 3.061 18 H -0.248 1.248 19 H -0.248 1.248 20 H -0.250 1.250 21 C 0.227 3.773 22 N -0.569 5.569 23 C -0.109 4.109 24 C -0.091 4.091 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.416 0.584 39 H 0.161 0.839 40 H 0.119 0.881 41 H 0.376 0.624 42 H 0.172 0.828 43 H 0.120 0.880 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.550 0.456 -0.846 1.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.252 2.748 3 C -0.558 4.558 4 C -0.558 4.558 5 C -0.403 4.403 6 C -0.109 4.109 7 C -0.128 4.128 8 C -0.105 4.105 9 C 0.054 3.946 10 N -0.328 5.328 11 C 0.211 3.789 12 N -0.286 5.286 13 C 0.024 3.976 14 C -0.305 4.305 15 C -0.171 4.171 16 O -0.344 6.344 17 Si 0.761 3.239 18 H -0.172 1.172 19 H -0.172 1.172 20 H -0.173 1.173 21 C 0.058 3.942 22 N -0.290 5.290 23 C -0.128 4.128 24 C -0.109 4.109 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.254 0.746 39 H 0.177 0.823 40 H 0.137 0.863 41 H 0.223 0.777 42 H 0.189 0.811 43 H 0.138 0.862 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.360 0.095 -1.187 2.644 hybrid contribution 0.499 0.188 0.399 0.666 sum -1.861 0.283 -0.788 2.041 Atomic orbital electron populations 1.26127 1.20455 1.04597 1.04519 0.78170 0.66855 0.66091 0.63682 1.26140 1.06470 1.18580 1.04589 1.26142 1.06467 1.08056 1.15112 1.27469 1.03115 0.99518 1.10199 1.21097 0.97326 0.94654 0.97799 1.21184 0.99008 0.99841 0.92751 1.19849 1.01427 0.94235 0.94964 1.20182 0.78152 1.00703 0.95522 1.44238 1.05766 1.59943 1.22830 1.19383 0.85321 0.87398 0.86825 1.67927 1.40659 1.16132 1.03870 1.22808 0.91105 0.89910 0.93769 1.21681 0.95955 1.10322 1.02500 1.24622 1.02500 0.94939 0.94995 1.86526 1.36762 1.39824 1.71262 0.85830 0.77934 0.80446 0.79647 1.17165 1.17162 1.17327 1.22853 1.00452 0.85503 0.85389 1.68000 1.06627 1.24662 1.29741 1.21184 0.99004 0.93767 0.98825 1.21097 0.97336 0.99773 0.92670 0.91158 0.91013 0.91161 0.91057 0.90927 0.91173 0.91177 0.90923 0.91057 0.85961 0.86155 0.90521 0.90522 0.74606 0.82262 0.86272 0.77673 0.81052 0.86158 0.85962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.76 8.65 101.05 0.87 1.63 16 2 Si 1.06 -2.95 12.32 -169.99 -2.09 -5.04 16 3 C -0.45 0.89 8.54 101.05 0.86 1.75 16 4 C -0.45 0.89 8.53 101.05 0.86 1.75 16 5 C -0.36 0.23 4.59 -39.58 -0.18 0.05 16 6 C -0.09 0.02 9.29 -39.58 -0.37 -0.35 16 7 C -0.11 -0.04 9.70 -39.58 -0.38 -0.42 16 8 C -0.10 -0.05 5.25 -104.62 -0.55 -0.59 16 9 C 0.18 0.11 5.77 -5.19 -0.03 0.08 16 10 N -0.69 -1.09 5.70 -63.49 -0.36 -1.46 16 11 C 0.57 1.87 8.42 -322.80 -2.72 -0.85 16 12 N -0.56 -1.77 9.59 -13.93 -0.13 -1.91 16 13 C 0.19 0.24 9.92 -17.22 -0.17 0.06 16 14 C -0.30 -0.09 5.36 -104.35 -0.56 -0.65 16 15 C -0.06 0.08 2.83 36.01 0.10 0.18 16 16 O -0.54 0.33 12.85 -35.23 -0.45 -0.12 16 17 Si 0.94 -1.36 25.21 -169.99 -4.28 -5.64 16 18 H -0.25 0.19 7.11 56.52 0.40 0.59 16 19 H -0.25 -0.02 7.11 56.52 0.40 0.39 16 20 H -0.25 0.33 7.05 56.52 0.40 0.73 16 21 C 0.23 0.29 10.99 -17.22 -0.19 0.10 16 22 N -0.57 -1.88 10.46 -13.93 -0.15 -2.03 16 23 C -0.11 -0.04 9.70 -39.58 -0.38 -0.42 16 24 C -0.09 0.02 9.29 -39.58 -0.37 -0.35 16 25 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 26 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 27 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 28 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 29 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 30 H 0.07 -0.15 7.69 -51.93 -0.40 -0.55 16 31 H 0.07 -0.15 7.69 -51.93 -0.40 -0.55 16 32 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 33 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 34 H 0.12 -0.23 7.43 -52.49 -0.39 -0.62 16 35 H 0.12 -0.07 8.06 -52.49 -0.42 -0.49 16 36 H 0.08 0.06 8.09 -51.93 -0.42 -0.36 16 37 H 0.08 0.06 8.09 -51.93 -0.42 -0.36 16 38 H 0.42 0.42 8.58 -40.82 -0.35 0.07 16 39 H 0.16 -0.13 5.03 -52.49 -0.26 -0.39 16 40 H 0.12 -0.28 7.96 -51.93 -0.41 -0.70 16 41 H 0.38 -1.33 8.70 45.56 0.40 -0.93 16 42 H 0.17 -0.14 8.06 -52.49 -0.42 -0.57 16 43 H 0.12 -0.07 8.06 -52.49 -0.42 -0.50 16 44 H 0.12 -0.23 7.44 -52.49 -0.39 -0.62 16 LS Contribution 370.83 15.07 5.59 5.59 Total: 0.00 -6.14 370.83 -11.10 -17.24 By element: Atomic # 1 Polarization: -2.58 SS G_CDS: -6.01 Total: -8.60 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: -3.20 Total: 1.97 kcal Atomic # 7 Polarization: -4.75 SS G_CDS: -0.64 Total: -5.39 kcal Atomic # 8 Polarization: 0.33 SS G_CDS: -0.45 Total: -0.12 kcal Atomic # 14 Polarization: -4.31 SS G_CDS: -6.38 Total: -10.69 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -6.14 -11.10 -17.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_9630642_12175864.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.322 kcal (2) G-P(sol) polarization free energy of solvation -6.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds