Wall clock time and date at job start Tue Mar 9 2021 13:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86292 * 109.47175 * 2 1 4 4 C 1.86304 * 109.47175 * 239.99928 * 2 1 3 5 5 C 1.86796 * 109.47345 * 120.00283 * 2 1 3 6 6 C 1.38233 * 120.00338 * 89.99399 * 5 2 1 7 7 C 1.38234 * 120.00037 * 179.72477 * 6 5 2 8 8 C 1.38234 * 120.00240 * 0.26327 * 7 6 5 9 9 C 1.50700 * 120.00260 * 179.97438 * 8 7 6 10 10 N 1.46500 * 109.47047 * 89.99944 * 9 8 7 11 11 C 1.38405 * 119.99939 * 180.02562 * 10 9 8 12 12 N 1.32491 * 119.21525 * 359.72841 * 11 10 9 13 13 C 1.32284 * 120.73764 * 179.72050 * 12 11 10 14 14 C 1.38604 * 119.19456 * 0.54464 * 13 12 11 15 15 C 1.50703 * 120.72157 * 179.71131 * 14 13 12 16 16 O 1.42902 * 109.47219 * 245.02299 * 15 14 13 17 17 Si 1.86297 * 109.46911 * 5.02063 * 15 14 13 18 18 H 1.48500 * 109.47193 * 60.00134 * 17 15 14 19 19 H 1.48499 * 109.47477 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47356 * 300.00009 * 17 15 14 21 21 C 1.38609 * 118.56100 * 359.73081 * 14 13 12 22 22 N 1.32273 * 119.19767 * 0.02562 * 21 14 13 23 23 C 1.38238 * 119.99693 * 0.02562 * 8 7 6 24 24 C 1.38234 * 120.00047 * 359.95697 * 23 8 7 25 25 H 1.08998 * 109.47461 * 299.99862 * 1 2 3 26 26 H 1.08995 * 109.47041 * 60.00323 * 1 2 3 27 27 H 1.09000 * 109.46941 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47556 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.47107 * 299.99920 * 3 2 1 30 30 H 1.09001 * 109.47298 * 60.00299 * 3 2 1 31 31 H 1.09004 * 109.47045 * 300.00301 * 4 2 1 32 32 H 1.09003 * 109.47110 * 60.00078 * 4 2 1 33 33 H 1.09000 * 109.47158 * 180.02562 * 4 2 1 34 34 H 1.08002 * 120.00157 * 0.02562 * 6 5 2 35 35 H 1.07999 * 120.00009 * 180.28389 * 7 6 5 36 36 H 1.08999 * 109.47240 * 210.00239 * 9 8 7 37 37 H 1.08999 * 109.46861 * 329.99859 * 9 8 7 38 38 H 0.97003 * 119.99859 * 0.02562 * 10 9 8 39 39 H 1.07989 * 120.40243 * 180.25384 * 13 12 11 40 40 H 1.08993 * 109.47416 * 125.02065 * 15 14 13 41 41 H 0.96708 * 114.00012 * 59.99618 * 16 15 14 42 42 H 1.08002 * 120.40274 * 179.97438 * 21 14 13 43 43 H 1.08001 * 119.99658 * 179.97438 * 23 8 7 44 44 H 1.07999 * 119.99990 * 180.02562 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4857 -0.8806 1.5251 6 6 2.7160 -2.2432 1.4909 7 6 3.1823 -2.8939 2.6179 8 6 3.4130 -2.1829 3.7807 9 6 3.9208 -2.8924 5.0095 10 7 5.3858 -2.8873 5.0060 11 6 6.0824 -3.4854 6.0417 12 7 5.4086 -4.0531 7.0312 13 6 6.0438 -4.6381 8.0333 14 6 7.4298 -4.6420 8.0450 15 6 8.1883 -5.2927 9.1730 16 8 8.9175 -4.2971 9.8935 17 14 6.9892 -6.1371 10.3219 18 1 6.2314 -7.1718 9.5732 19 1 7.7365 -6.7778 11.4337 20 1 6.0437 -5.1343 10.8748 21 6 8.1030 -4.0341 6.9970 22 7 7.4072 -3.4713 6.0230 23 6 3.1770 -0.8213 3.8167 24 6 2.7111 -0.1706 2.6896 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.5739 1.7564 -0.0005 29 1 2.1206 2.2702 -0.8900 30 1 2.1207 2.2702 0.8900 31 1 2.1206 -1.9059 -1.5212 32 1 2.1207 -0.3644 -2.4112 33 1 3.5740 -0.8787 -1.5209 34 1 2.5363 -2.7986 0.5823 35 1 3.3666 -3.9577 2.5898 36 1 3.5578 -2.3804 5.9007 37 1 3.5610 -3.9212 5.0097 38 1 5.8676 -2.4648 4.2777 39 1 5.4892 -5.1027 8.8350 40 1 8.8822 -6.0288 8.7672 41 1 8.3622 -3.6079 10.2832 42 1 9.1828 -4.0194 6.9763 43 1 3.3569 -0.2659 4.7253 44 1 2.5271 0.8932 2.7176 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_9630642_12175864.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:43:00 Heat of formation + Delta-G solvation = 11.382605 kcal Electronic energy + Delta-G solvation = -22829.064971 eV Core-core repulsion = 19484.075114 eV Total energy + Delta-G solvation = -3344.989858 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.143 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.14416 -40.21445 -38.16747 -36.82289 -34.80158 -33.37168 -31.88141 -31.50900 -29.42815 -28.30024 -28.27748 -27.51824 -26.16655 -25.44326 -23.47224 -23.15899 -22.06962 -19.65065 -18.77727 -18.11922 -17.45821 -16.77258 -16.35767 -16.24576 -16.11832 -15.84687 -15.59679 -15.53664 -14.77001 -14.36865 -14.31954 -14.13233 -14.02606 -14.01182 -13.91689 -13.70720 -13.47566 -13.18075 -13.12168 -13.11291 -12.97469 -12.63993 -12.21514 -12.20643 -11.98219 -11.92534 -11.67242 -11.40816 -10.93253 -10.78012 -10.76483 -10.57460 -10.05008 -9.81528 -9.69193 -9.17196 -0.00592 0.09890 0.16159 0.51408 1.19474 1.47198 1.53541 1.80206 1.84475 1.94445 2.02093 2.14271 2.66125 2.74682 2.93220 3.10455 3.55554 3.60418 3.67235 3.70710 3.81788 3.90364 4.13883 4.21071 4.35290 4.53025 4.57531 4.66979 4.72114 4.74247 4.83879 4.84054 4.87968 4.88869 4.89071 4.89906 5.00318 5.16284 5.18848 5.39666 5.57345 5.58605 5.61421 5.67067 5.67420 5.70367 5.93598 6.11905 6.33434 6.71645 7.20216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.464 4.464 2 Si 1.129 2.871 3 C -0.463 4.463 4 C -0.463 4.463 5 C -0.372 4.372 6 C -0.102 4.102 7 C -0.121 4.121 8 C -0.110 4.110 9 C 0.186 3.814 10 N -0.689 5.689 11 C 0.552 3.448 12 N -0.581 5.581 13 C 0.182 3.818 14 C -0.286 4.286 15 C -0.053 4.053 16 O -0.551 6.551 17 Si 0.971 3.029 18 H -0.257 1.257 19 H -0.269 1.269 20 H -0.250 1.250 21 C 0.218 3.782 22 N -0.589 5.589 23 C -0.121 4.121 24 C -0.102 4.102 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.138 0.862 35 H 0.125 0.875 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.417 0.583 39 H 0.177 0.823 40 H 0.132 0.868 41 H 0.388 0.612 42 H 0.191 0.809 43 H 0.125 0.875 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.490 0.600 -0.993 1.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.316 2.684 3 C -0.570 4.570 4 C -0.570 4.570 5 C -0.412 4.412 6 C -0.119 4.119 7 C -0.140 4.140 8 C -0.110 4.110 9 C 0.063 3.937 10 N -0.326 5.326 11 C 0.195 3.805 12 N -0.305 5.305 13 C 0.015 3.985 14 C -0.294 4.294 15 C -0.165 4.165 16 O -0.358 6.358 17 Si 0.795 3.205 18 H -0.181 1.181 19 H -0.193 1.193 20 H -0.173 1.173 21 C 0.050 3.950 22 N -0.311 5.311 23 C -0.140 4.140 24 C -0.119 4.119 25 H 0.086 0.914 26 H 0.093 0.907 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.156 0.844 35 H 0.143 0.857 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.255 0.745 39 H 0.193 0.807 40 H 0.150 0.850 41 H 0.237 0.763 42 H 0.207 0.793 43 H 0.143 0.857 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.303 0.243 -1.318 2.664 hybrid contribution 0.496 0.132 0.478 0.701 sum -1.807 0.375 -0.840 2.027 Atomic orbital electron populations 1.26298 1.21698 1.04452 1.04554 0.77128 0.65089 0.64537 0.61651 1.26290 1.06396 1.19482 1.04843 1.26292 1.06395 1.08490 1.15835 1.28002 1.02511 0.99588 1.11094 1.21383 0.97184 0.95154 0.98222 1.21350 0.99353 1.00248 0.93043 1.19842 1.01853 0.94415 0.94925 1.20085 0.77716 1.00342 0.95541 1.44281 1.05998 1.59722 1.22563 1.19595 0.85611 0.87979 0.87333 1.67941 1.41232 1.16852 1.04445 1.23171 0.91824 0.89750 0.93775 1.21812 0.95628 1.09462 1.02500 1.24664 1.02675 0.94808 0.94339 1.86502 1.37571 1.40364 1.71314 0.85378 0.77126 0.79632 0.78373 1.18117 1.19335 1.17343 1.23248 1.01335 0.85185 0.85223 1.68021 1.06777 1.25571 1.30753 1.21351 0.99340 0.93873 0.99418 1.21384 0.97190 1.00714 0.92652 0.91405 0.90716 0.91413 0.91332 0.90706 0.90936 0.90945 0.90703 0.91330 0.84446 0.85746 0.90982 0.91007 0.74536 0.80684 0.85046 0.76300 0.79262 0.85733 0.84439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.74 8.65 113.37 0.98 2.72 16 2 Si 1.13 -6.83 12.32 68.60 0.85 -5.99 16 3 C -0.46 2.06 8.54 113.37 0.97 3.03 16 4 C -0.46 2.06 8.53 113.37 0.97 3.03 16 5 C -0.37 0.50 4.59 22.27 0.10 0.60 16 6 C -0.10 0.02 9.29 22.27 0.21 0.22 16 7 C -0.12 -0.18 9.70 22.27 0.22 0.03 16 8 C -0.11 -0.22 5.25 -19.86 -0.10 -0.32 16 9 C 0.19 0.49 5.77 85.63 0.49 0.98 16 10 N -0.69 -3.11 5.70 -354.78 -2.02 -5.13 16 11 C 0.55 4.22 8.42 261.49 2.20 6.42 16 12 N -0.58 -4.16 9.59 -197.99 -1.90 -6.06 16 13 C 0.18 0.48 9.92 84.71 0.84 1.32 16 14 C -0.29 -0.11 5.36 -19.69 -0.11 -0.22 16 15 C -0.05 0.18 2.83 71.24 0.20 0.38 16 16 O -0.55 1.12 12.85 -148.98 -1.91 -0.79 16 17 Si 0.97 -3.17 25.21 68.60 1.73 -1.44 16 18 H -0.26 0.45 7.11 99.48 0.71 1.16 16 19 H -0.27 -0.06 7.11 99.48 0.71 0.64 16 20 H -0.25 0.83 7.05 99.48 0.70 1.53 16 21 C 0.22 0.57 10.99 84.72 0.93 1.50 16 22 N -0.59 -4.34 10.46 -197.98 -2.07 -6.41 16 23 C -0.12 -0.18 9.70 22.27 0.22 0.04 16 24 C -0.10 0.02 9.29 22.27 0.21 0.23 16 25 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 26 H 0.07 -0.32 7.96 -2.39 -0.02 -0.33 16 27 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 28 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 29 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 30 H 0.07 -0.35 7.69 -2.39 -0.02 -0.37 16 31 H 0.07 -0.35 7.69 -2.38 -0.02 -0.36 16 32 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 33 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 34 H 0.14 -0.55 7.43 -2.91 -0.02 -0.57 16 35 H 0.12 -0.02 8.06 -2.91 -0.02 -0.04 16 36 H 0.07 0.23 8.09 -2.39 -0.02 0.21 16 37 H 0.07 0.24 8.09 -2.39 -0.02 0.22 16 38 H 0.42 1.45 8.58 -92.71 -0.80 0.65 16 39 H 0.18 -0.31 5.03 -2.92 -0.01 -0.32 16 40 H 0.13 -0.77 7.96 -2.39 -0.02 -0.79 16 41 H 0.39 -3.00 8.70 -74.05 -0.64 -3.65 16 42 H 0.19 -0.40 8.06 -2.91 -0.02 -0.42 16 43 H 0.12 -0.03 8.06 -2.91 -0.02 -0.05 16 44 H 0.14 -0.55 7.44 -2.91 -0.02 -0.57 16 Total: 0.00 -13.95 370.83 3.32 -10.63 By element: Atomic # 1 Polarization: -5.11 SS G_CDS: 0.32 Total: -4.79 kcal Atomic # 6 Polarization: 11.65 SS G_CDS: 8.32 Total: 19.97 kcal Atomic # 7 Polarization: -11.61 SS G_CDS: -5.99 Total: -17.60 kcal Atomic # 8 Polarization: 1.12 SS G_CDS: -1.91 Total: -0.79 kcal Atomic # 14 Polarization: -10.01 SS G_CDS: 2.57 Total: -7.43 kcal Total: -13.95 3.32 -10.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_9630642_12175864.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.016 kcal (2) G-P(sol) polarization free energy of solvation -13.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds