Wall clock time and date at job start Tue Mar 9 2021 13:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86292 * 109.47175 * 2 1 4 4 C 1.86304 * 109.47175 * 239.99928 * 2 1 3 5 5 C 1.86796 * 109.47345 * 120.00283 * 2 1 3 6 6 C 1.38233 * 120.00338 * 89.99399 * 5 2 1 7 7 C 1.38234 * 120.00037 * 179.72477 * 6 5 2 8 8 C 1.38234 * 120.00240 * 0.26327 * 7 6 5 9 9 C 1.50700 * 120.00260 * 179.97438 * 8 7 6 10 10 N 1.46500 * 109.47047 * 89.99944 * 9 8 7 11 11 C 1.39145 * 119.99973 * 179.97438 * 10 9 8 12 12 C 1.39309 * 119.71932 * 179.97438 * 11 10 9 13 13 F 1.35102 * 120.46639 * 359.97438 * 12 11 10 14 14 C 1.38478 * 119.06112 * 179.97438 * 12 11 10 15 15 C 1.38865 * 118.48459 * 0.02562 * 14 12 11 16 16 C 1.50697 * 120.32634 * 179.97438 * 15 14 12 17 17 O 1.42907 * 109.47136 * 299.99468 * 16 15 14 18 18 Si 1.86296 * 109.47040 * 180.02562 * 16 15 14 19 19 H 1.48503 * 109.47526 * 59.99811 * 18 16 15 20 20 H 1.48506 * 109.47515 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46959 * 299.99957 * 18 16 15 22 22 C 1.38027 * 119.34288 * 359.97438 * 15 14 12 23 23 N 1.31976 * 120.90207 * 359.74208 * 22 15 14 24 24 C 1.38238 * 119.99693 * 0.02562 * 8 7 6 25 25 C 1.38234 * 120.00047 * 359.95697 * 24 8 7 26 26 H 1.08998 * 109.47461 * 299.99862 * 1 2 3 27 27 H 1.08995 * 109.47041 * 60.00323 * 1 2 3 28 28 H 1.09000 * 109.46941 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47556 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47107 * 299.99920 * 3 2 1 31 31 H 1.09001 * 109.47298 * 60.00299 * 3 2 1 32 32 H 1.09004 * 109.47045 * 300.00301 * 4 2 1 33 33 H 1.09003 * 109.47110 * 60.00078 * 4 2 1 34 34 H 1.09000 * 109.47158 * 180.02562 * 4 2 1 35 35 H 1.08002 * 120.00157 * 0.02562 * 6 5 2 36 36 H 1.07999 * 120.00009 * 180.28389 * 7 6 5 37 37 H 1.08999 * 109.47240 * 210.00239 * 9 8 7 38 38 H 1.08999 * 109.46861 * 329.99859 * 9 8 7 39 39 H 0.97003 * 119.99859 * 0.02562 * 10 9 8 40 40 H 1.07994 * 120.76018 * 179.97438 * 14 12 11 41 41 H 1.08992 * 109.47353 * 59.99950 * 16 15 14 42 42 H 0.96697 * 114.00136 * 300.00620 * 17 16 15 43 43 H 1.08004 * 119.55139 * 180.02562 * 22 15 14 44 44 H 1.08001 * 119.99658 * 179.97438 * 24 8 7 45 45 H 1.07999 * 119.99990 * 180.02562 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4857 -0.8806 1.5251 6 6 2.7160 -2.2432 1.4909 7 6 3.1823 -2.8939 2.6179 8 6 3.4130 -2.1829 3.7807 9 6 3.9208 -2.8924 5.0095 10 7 5.3858 -2.8873 5.0060 11 6 6.0861 -3.4876 6.0478 12 6 7.4791 -3.4799 6.0382 13 9 8.1540 -2.8944 5.0248 14 6 8.1623 -4.0808 7.0821 15 6 7.4274 -4.6708 8.1020 16 6 8.1283 -5.3369 9.2578 17 8 8.9478 -6.4007 8.7689 18 14 6.8623 -6.0224 10.4402 19 1 6.0144 -7.0174 9.7355 20 1 7.5529 -6.6783 11.5795 21 1 6.0102 -4.9174 10.9483 22 6 6.0485 -4.6410 8.0466 23 7 5.4230 -4.0563 7.0423 24 6 3.1770 -0.8213 3.8167 25 6 2.7111 -0.1706 2.6896 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.5739 1.7564 -0.0005 30 1 2.1206 2.2702 -0.8900 31 1 2.1207 2.2702 0.8900 32 1 2.1206 -1.9059 -1.5212 33 1 2.1207 -0.3644 -2.4112 34 1 3.5740 -0.8787 -1.5209 35 1 2.5363 -2.7986 0.5823 36 1 3.3666 -3.9577 2.5898 37 1 3.5578 -2.3804 5.9007 38 1 3.5610 -3.9212 5.0097 39 1 5.8676 -2.4648 4.2777 40 1 9.2420 -4.0912 7.1023 41 1 8.7509 -4.6068 9.7748 42 1 8.4590 -7.0886 8.2967 43 1 5.4736 -5.0985 8.8382 44 1 3.3569 -0.2659 4.7253 45 1 2.5271 0.8932 2.7176 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_9630642_17656566.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:45:27 Heat of formation + Delta-G solvation = -58.874931 kcal Electronic energy + Delta-G solvation = -25179.153994 eV Core-core repulsion = 21427.089477 eV Total energy + Delta-G solvation = -3752.064518 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.138 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.83273 -41.40137 -40.21106 -38.17091 -36.69217 -33.44524 -32.83915 -31.92408 -30.96781 -29.58815 -28.48438 -28.44949 -27.40780 -26.06004 -24.47488 -23.50852 -22.88670 -22.04539 -19.52161 -18.52478 -18.32138 -17.78967 -17.34909 -17.00380 -16.30741 -16.21779 -16.06672 -15.90167 -15.72043 -15.52239 -14.90657 -14.72856 -14.40797 -14.31411 -14.21074 -14.08107 -13.97729 -13.92266 -13.68272 -13.56897 -13.46322 -13.29947 -13.25917 -13.14169 -12.66239 -12.64735 -12.20552 -12.04223 -12.02604 -11.35614 -11.09049 -10.94693 -10.87025 -10.68871 -10.62492 -10.46096 -9.83478 -9.71732 -8.74295 -0.05344 0.14631 0.14866 0.49341 1.08890 1.39178 1.45233 1.66348 1.80771 1.84381 1.87034 2.12189 2.50274 2.57863 2.90465 3.08830 3.28973 3.41151 3.59836 3.71428 3.84868 3.88388 4.02972 4.09028 4.37581 4.45731 4.46817 4.50376 4.65359 4.66354 4.67434 4.67966 4.71534 4.71670 4.72245 4.73250 4.75636 4.97501 4.99285 5.12037 5.34201 5.38152 5.42527 5.46338 5.50326 5.58124 5.60879 5.92211 6.07570 6.18433 6.49511 6.96784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.060 2.940 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.362 4.362 6 C -0.091 4.091 7 C -0.111 4.111 8 C -0.104 4.104 9 C 0.174 3.826 10 N -0.713 5.713 11 C 0.390 3.610 12 C -0.020 4.020 13 F -0.133 7.133 14 C -0.034 4.034 15 C -0.211 4.211 16 C -0.067 4.067 17 O -0.539 6.539 18 Si 0.943 3.057 19 H -0.248 1.248 20 H -0.249 1.249 21 H -0.247 1.247 22 C 0.141 3.859 23 N -0.513 5.513 24 C -0.111 4.111 25 C -0.091 4.091 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.414 0.586 40 H 0.152 0.848 41 H 0.120 0.880 42 H 0.377 0.623 43 H 0.157 0.843 44 H 0.120 0.880 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.718 0.378 -0.842 1.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.252 2.748 3 C -0.558 4.558 4 C -0.558 4.558 5 C -0.404 4.404 6 C -0.109 4.109 7 C -0.129 4.129 8 C -0.105 4.105 9 C 0.051 3.949 10 N -0.346 5.346 11 C 0.151 3.849 12 C -0.046 4.046 13 F -0.112 7.112 14 C -0.061 4.061 15 C -0.217 4.217 16 C -0.178 4.178 17 O -0.344 6.344 18 Si 0.765 3.235 19 H -0.171 1.171 20 H -0.173 1.173 21 H -0.171 1.171 22 C -0.017 4.017 23 N -0.230 5.230 24 C -0.129 4.129 25 C -0.109 4.109 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.251 0.749 40 H 0.169 0.831 41 H 0.138 0.862 42 H 0.224 0.776 43 H 0.174 0.826 44 H 0.138 0.862 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.952 0.403 0.020 2.980 hybrid contribution 1.140 0.105 -0.874 1.440 sum -1.812 0.508 -0.854 2.067 Atomic orbital electron populations 1.26125 1.20447 1.04598 1.04520 0.78173 0.66867 0.66091 0.63688 1.26140 1.06459 1.18584 1.04590 1.26141 1.06457 1.08057 1.15115 1.27464 1.03195 0.99518 1.10199 1.21097 0.97313 0.94657 0.97797 1.21184 0.99112 0.99830 0.92784 1.19886 1.01282 0.94239 0.95050 1.20174 0.78810 1.00564 0.95376 1.44643 1.06099 1.60728 1.23164 1.18441 0.86382 0.91196 0.88857 1.18000 0.88910 1.06892 0.90844 1.91496 1.79813 1.82332 1.57576 1.21264 1.01579 0.92541 0.90684 1.20901 0.94398 1.06437 0.99943 1.24782 1.02253 0.92287 0.98515 1.86522 1.36787 1.34275 1.76801 0.85787 0.77384 0.81134 0.79211 1.17126 1.17305 1.17065 1.22355 0.91260 0.93584 0.94464 1.67301 1.38916 1.14328 1.02479 1.21187 0.99099 0.93807 0.98818 1.21098 0.97319 0.99763 0.92681 0.91158 0.91011 0.91161 0.91069 0.90923 0.91173 0.91177 0.90920 0.91069 0.85980 0.86174 0.90604 0.90622 0.74898 0.83064 0.86239 0.77577 0.82628 0.86169 0.85981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.74 8.65 101.05 0.87 1.61 16 2 Si 1.06 -2.89 12.32 -169.99 -2.09 -4.99 16 3 C -0.45 0.87 8.54 101.05 0.86 1.73 16 4 C -0.45 0.87 8.53 101.05 0.86 1.73 16 5 C -0.36 0.21 4.59 -39.58 -0.18 0.03 16 6 C -0.09 0.01 9.29 -39.58 -0.37 -0.36 16 7 C -0.11 -0.04 9.70 -39.58 -0.38 -0.43 16 8 C -0.10 -0.05 5.25 -104.62 -0.55 -0.60 16 9 C 0.17 0.09 5.82 -5.19 -0.03 0.06 16 10 N -0.71 -0.80 5.70 -61.52 -0.35 -1.16 16 11 C 0.39 0.91 7.49 -154.84 -1.16 -0.25 16 12 C -0.02 -0.04 7.35 -39.09 -0.29 -0.33 16 13 F -0.13 -0.37 16.65 2.25 0.04 -0.33 16 14 C -0.03 -0.03 9.75 -39.26 -0.38 -0.41 16 15 C -0.21 -0.02 5.40 -104.47 -0.56 -0.58 16 16 C -0.07 0.09 2.84 36.00 0.10 0.19 16 17 O -0.54 0.27 12.78 -35.23 -0.45 -0.18 16 18 Si 0.94 -1.42 25.10 -169.99 -4.27 -5.69 16 19 H -0.25 0.34 7.11 56.52 0.40 0.74 16 20 H -0.25 -0.01 7.11 56.52 0.40 0.39 16 21 H -0.25 0.25 7.11 56.52 0.40 0.65 16 22 C 0.14 0.12 9.84 -17.57 -0.17 -0.06 16 23 N -0.51 -1.28 9.57 -12.36 -0.12 -1.40 16 24 C -0.11 -0.05 9.70 -39.58 -0.38 -0.43 16 25 C -0.09 0.01 9.29 -39.58 -0.37 -0.36 16 26 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 27 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 28 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 29 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 30 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 31 H 0.07 -0.14 7.69 -51.93 -0.40 -0.54 16 32 H 0.07 -0.14 7.69 -51.93 -0.40 -0.54 16 33 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 34 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 35 H 0.12 -0.22 7.43 -52.49 -0.39 -0.61 16 36 H 0.12 -0.07 8.06 -52.49 -0.42 -0.49 16 37 H 0.08 0.06 8.09 -51.93 -0.42 -0.36 16 38 H 0.08 0.06 8.09 -51.93 -0.42 -0.36 16 39 H 0.41 0.25 7.93 -40.82 -0.32 -0.07 16 40 H 0.15 -0.04 8.06 -52.49 -0.42 -0.46 16 41 H 0.12 -0.26 7.96 -51.93 -0.41 -0.67 16 42 H 0.38 -1.35 8.70 45.56 0.40 -0.95 16 43 H 0.16 -0.15 4.88 -52.48 -0.26 -0.41 16 44 H 0.12 -0.06 8.06 -52.49 -0.42 -0.48 16 45 H 0.12 -0.22 7.44 -52.49 -0.39 -0.61 16 LS Contribution 381.26 15.07 5.75 5.75 Total: 0.00 -5.39 381.26 -9.60 -14.99 By element: Atomic # 1 Polarization: -2.54 SS G_CDS: -5.97 Total: -8.52 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: -2.13 Total: 1.53 kcal Atomic # 7 Polarization: -2.09 SS G_CDS: -0.47 Total: -2.56 kcal Atomic # 8 Polarization: 0.27 SS G_CDS: -0.45 Total: -0.18 kcal Atomic # 9 Polarization: -0.37 SS G_CDS: 0.04 Total: -0.33 kcal Atomic # 14 Polarization: -4.31 SS G_CDS: -6.36 Total: -10.67 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -5.39 -9.60 -14.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_9630642_17656566.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.889 kcal (2) G-P(sol) polarization free energy of solvation -5.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds