Wall clock time and date at job start Tue Mar 9 2021 13:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86292 * 109.47175 * 2 1 4 4 C 1.86304 * 109.47175 * 239.99928 * 2 1 3 5 5 C 1.86796 * 109.47345 * 120.00283 * 2 1 3 6 6 C 1.38233 * 120.00338 * 89.99399 * 5 2 1 7 7 C 1.38234 * 120.00037 * 179.72477 * 6 5 2 8 8 C 1.38234 * 120.00240 * 0.26327 * 7 6 5 9 9 C 1.50700 * 120.00260 * 179.97438 * 8 7 6 10 10 N 1.46500 * 109.47047 * 89.99944 * 9 8 7 11 11 C 1.39145 * 119.99973 * 179.97438 * 10 9 8 12 12 C 1.39309 * 119.71932 * 179.97438 * 11 10 9 13 13 F 1.35102 * 120.46639 * 359.97438 * 12 11 10 14 14 C 1.38478 * 119.06112 * 179.97438 * 12 11 10 15 15 C 1.38865 * 118.48459 * 0.02562 * 14 12 11 16 16 C 1.50697 * 120.32634 * 179.97438 * 15 14 12 17 17 O 1.42907 * 109.47136 * 299.99468 * 16 15 14 18 18 Si 1.86296 * 109.47040 * 180.02562 * 16 15 14 19 19 H 1.48503 * 109.47526 * 59.99811 * 18 16 15 20 20 H 1.48506 * 109.47515 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46959 * 299.99957 * 18 16 15 22 22 C 1.38027 * 119.34288 * 359.97438 * 15 14 12 23 23 N 1.31976 * 120.90207 * 359.74208 * 22 15 14 24 24 C 1.38238 * 119.99693 * 0.02562 * 8 7 6 25 25 C 1.38234 * 120.00047 * 359.95697 * 24 8 7 26 26 H 1.08998 * 109.47461 * 299.99862 * 1 2 3 27 27 H 1.08995 * 109.47041 * 60.00323 * 1 2 3 28 28 H 1.09000 * 109.46941 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47556 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47107 * 299.99920 * 3 2 1 31 31 H 1.09001 * 109.47298 * 60.00299 * 3 2 1 32 32 H 1.09004 * 109.47045 * 300.00301 * 4 2 1 33 33 H 1.09003 * 109.47110 * 60.00078 * 4 2 1 34 34 H 1.09000 * 109.47158 * 180.02562 * 4 2 1 35 35 H 1.08002 * 120.00157 * 0.02562 * 6 5 2 36 36 H 1.07999 * 120.00009 * 180.28389 * 7 6 5 37 37 H 1.08999 * 109.47240 * 210.00239 * 9 8 7 38 38 H 1.08999 * 109.46861 * 329.99859 * 9 8 7 39 39 H 0.97003 * 119.99859 * 0.02562 * 10 9 8 40 40 H 1.07994 * 120.76018 * 179.97438 * 14 12 11 41 41 H 1.08992 * 109.47353 * 59.99950 * 16 15 14 42 42 H 0.96697 * 114.00136 * 300.00620 * 17 16 15 43 43 H 1.08004 * 119.55139 * 180.02562 * 22 15 14 44 44 H 1.08001 * 119.99658 * 179.97438 * 24 8 7 45 45 H 1.07999 * 119.99990 * 180.02562 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4857 -0.8806 1.5251 6 6 2.7160 -2.2432 1.4909 7 6 3.1823 -2.8939 2.6179 8 6 3.4130 -2.1829 3.7807 9 6 3.9208 -2.8924 5.0095 10 7 5.3858 -2.8873 5.0060 11 6 6.0861 -3.4876 6.0478 12 6 7.4791 -3.4799 6.0382 13 9 8.1540 -2.8944 5.0248 14 6 8.1623 -4.0808 7.0821 15 6 7.4274 -4.6708 8.1020 16 6 8.1283 -5.3369 9.2578 17 8 8.9478 -6.4007 8.7689 18 14 6.8623 -6.0224 10.4402 19 1 6.0144 -7.0174 9.7355 20 1 7.5529 -6.6783 11.5795 21 1 6.0102 -4.9174 10.9483 22 6 6.0485 -4.6410 8.0466 23 7 5.4230 -4.0563 7.0423 24 6 3.1770 -0.8213 3.8167 25 6 2.7111 -0.1706 2.6896 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.5739 1.7564 -0.0005 30 1 2.1206 2.2702 -0.8900 31 1 2.1207 2.2702 0.8900 32 1 2.1206 -1.9059 -1.5212 33 1 2.1207 -0.3644 -2.4112 34 1 3.5740 -0.8787 -1.5209 35 1 2.5363 -2.7986 0.5823 36 1 3.3666 -3.9577 2.5898 37 1 3.5578 -2.3804 5.9007 38 1 3.5610 -3.9212 5.0097 39 1 5.8676 -2.4648 4.2777 40 1 9.2420 -4.0912 7.1023 41 1 8.7509 -4.6068 9.7748 42 1 8.4590 -7.0886 8.2967 43 1 5.4736 -5.0985 8.8382 44 1 3.3569 -0.2659 4.7253 45 1 2.5271 0.8932 2.7176 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_9630642_17656566.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:45:26 Heat of formation + Delta-G solvation = -50.091935 kcal Electronic energy + Delta-G solvation = -25178.773135 eV Core-core repulsion = 21427.089477 eV Total energy + Delta-G solvation = -3751.683658 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.138 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.99121 -41.47289 -40.18711 -38.14105 -36.71044 -33.48303 -32.89166 -31.88575 -30.98519 -29.42629 -28.30736 -28.28355 -27.41469 -26.07422 -24.53929 -23.47593 -22.93333 -22.04148 -19.58169 -18.56391 -18.39105 -17.79532 -17.33213 -17.11741 -16.30776 -16.20927 -16.02804 -15.92439 -15.72733 -15.53193 -14.98428 -14.72632 -14.35099 -14.26401 -14.08968 -13.99117 -13.91745 -13.84152 -13.67724 -13.53753 -13.43343 -13.13428 -13.12819 -12.98163 -12.60937 -12.59342 -12.10561 -12.01205 -11.98229 -11.40646 -10.94916 -10.78350 -10.78224 -10.77170 -10.68444 -10.40322 -9.82157 -9.68462 -8.82515 -0.14062 0.07658 0.17091 0.50708 1.19520 1.50790 1.55161 1.83143 1.92222 1.95976 2.01428 2.17046 2.49405 2.65527 2.91435 3.01255 3.24784 3.46764 3.67059 3.70105 3.81600 3.90643 3.98553 4.13657 4.36332 4.41948 4.52244 4.54375 4.62101 4.72335 4.74186 4.83251 4.83447 4.87333 4.88212 4.88367 4.89315 4.95410 5.00404 5.15831 5.30870 5.39931 5.56830 5.57970 5.61368 5.66569 5.69663 5.85279 6.10176 6.11806 6.72317 6.88374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.464 4.464 2 Si 1.128 2.872 3 C -0.463 4.463 4 C -0.463 4.463 5 C -0.373 4.373 6 C -0.102 4.102 7 C -0.123 4.123 8 C -0.110 4.110 9 C 0.182 3.818 10 N -0.712 5.712 11 C 0.379 3.621 12 C -0.036 4.036 13 F -0.140 7.140 14 C -0.034 4.034 15 C -0.204 4.204 16 C -0.064 4.064 17 O -0.552 6.552 18 Si 0.975 3.025 19 H -0.248 1.248 20 H -0.271 1.271 21 H -0.252 1.252 22 C 0.135 3.865 23 N -0.530 5.530 24 C -0.123 4.123 25 C -0.102 4.102 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.138 0.862 36 H 0.125 0.875 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.414 0.586 40 H 0.162 0.838 41 H 0.130 0.870 42 H 0.389 0.611 43 H 0.172 0.828 44 H 0.125 0.875 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.791 0.408 -0.980 2.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.315 2.685 3 C -0.570 4.570 4 C -0.570 4.570 5 C -0.413 4.413 6 C -0.119 4.119 7 C -0.141 4.141 8 C -0.111 4.111 9 C 0.059 3.941 10 N -0.345 5.345 11 C 0.141 3.859 12 C -0.062 4.062 13 F -0.120 7.120 14 C -0.060 4.060 15 C -0.209 4.209 16 C -0.175 4.175 17 O -0.359 6.359 18 Si 0.799 3.201 19 H -0.171 1.171 20 H -0.196 1.196 21 H -0.176 1.176 22 C -0.022 4.022 23 N -0.248 5.248 24 C -0.142 4.142 25 C -0.119 4.119 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.155 0.845 36 H 0.143 0.857 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.252 0.748 40 H 0.180 0.820 41 H 0.147 0.853 42 H 0.239 0.761 43 H 0.189 0.811 44 H 0.143 0.857 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.030 0.424 -0.123 3.062 hybrid contribution 1.167 0.070 -0.804 1.419 sum -1.863 0.494 -0.927 2.139 Atomic orbital electron populations 1.26295 1.21674 1.04455 1.04558 0.77137 0.65117 0.64543 0.61661 1.26289 1.06381 1.19485 1.04848 1.26289 1.06380 1.08491 1.15830 1.28000 1.02599 0.99596 1.11098 1.21386 0.97170 0.95157 0.98231 1.21356 0.99457 1.00258 0.93076 1.19897 1.01699 0.94420 0.95069 1.20077 0.78520 1.00212 0.95326 1.44670 1.06256 1.60574 1.23001 1.18575 0.86649 0.91558 0.89167 1.18151 0.89015 1.07782 0.91281 1.91470 1.79915 1.82589 1.57980 1.21449 1.02185 0.91995 0.90359 1.21025 0.94125 1.05780 0.99996 1.24845 1.02441 0.92358 0.97842 1.86495 1.37592 1.34787 1.77048 0.85326 0.76551 0.80371 0.77893 1.17148 1.19588 1.17644 1.22681 0.91854 0.93250 0.94404 1.67318 1.39499 1.14970 1.03007 1.21358 0.99463 0.93939 0.99411 1.21385 0.97186 1.00700 0.92677 0.91411 0.90699 0.91409 0.91351 0.90688 0.90943 0.90940 0.90685 0.91347 0.84462 0.85723 0.91090 0.91057 0.74805 0.82015 0.85258 0.76136 0.81141 0.85749 0.84476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.69 8.65 113.37 0.98 2.67 16 2 Si 1.13 -6.69 12.32 68.60 0.85 -5.85 16 3 C -0.46 2.01 8.54 113.37 0.97 2.98 16 4 C -0.46 2.02 8.53 113.37 0.97 2.99 16 5 C -0.37 0.43 4.59 22.27 0.10 0.53 16 6 C -0.10 0.00 9.29 22.27 0.21 0.21 16 7 C -0.12 -0.20 9.70 22.27 0.22 0.02 16 8 C -0.11 -0.23 5.25 -19.86 -0.10 -0.33 16 9 C 0.18 0.43 5.82 85.63 0.50 0.93 16 10 N -0.71 -2.51 5.70 -348.55 -1.99 -4.50 16 11 C 0.38 2.13 7.49 133.07 1.00 3.13 16 12 C -0.04 -0.18 7.35 22.58 0.17 -0.02 16 13 F -0.14 -0.92 16.65 44.97 0.75 -0.17 16 14 C -0.03 -0.06 9.75 22.48 0.22 0.16 16 15 C -0.20 0.02 5.40 -19.77 -0.11 -0.08 16 16 C -0.06 0.21 2.84 71.23 0.20 0.41 16 17 O -0.55 0.93 12.78 -148.98 -1.90 -0.97 16 18 Si 0.97 -3.39 25.10 68.60 1.72 -1.66 16 19 H -0.25 0.86 7.11 99.48 0.71 1.57 16 20 H -0.27 -0.06 7.11 99.48 0.71 0.65 16 21 H -0.25 0.65 7.11 99.48 0.71 1.35 16 22 C 0.14 0.22 9.84 84.62 0.83 1.06 16 23 N -0.53 -2.99 9.57 -193.03 -1.85 -4.84 16 24 C -0.12 -0.20 9.70 22.27 0.22 0.01 16 25 C -0.10 0.00 9.29 22.27 0.21 0.20 16 26 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 27 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 28 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 29 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 30 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 31 H 0.07 -0.34 7.69 -2.39 -0.02 -0.36 16 32 H 0.07 -0.34 7.69 -2.38 -0.02 -0.36 16 33 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 34 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 35 H 0.14 -0.53 7.43 -2.91 -0.02 -0.55 16 36 H 0.12 -0.02 8.06 -2.91 -0.02 -0.04 16 37 H 0.07 0.22 8.09 -2.39 -0.02 0.20 16 38 H 0.07 0.21 8.09 -2.39 -0.02 0.19 16 39 H 0.41 1.09 7.93 -92.71 -0.74 0.35 16 40 H 0.16 -0.13 8.06 -2.91 -0.02 -0.15 16 41 H 0.13 -0.67 7.96 -2.39 -0.02 -0.69 16 42 H 0.39 -3.03 8.70 -74.06 -0.64 -3.68 16 43 H 0.17 -0.39 4.88 -2.91 -0.01 -0.41 16 44 H 0.12 -0.01 8.06 -2.91 -0.02 -0.03 16 45 H 0.14 -0.52 7.44 -2.91 -0.02 -0.54 16 Total: 0.00 -12.17 381.26 4.53 -7.64 By element: Atomic # 1 Polarization: -4.89 SS G_CDS: 0.39 Total: -4.51 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: 6.57 Total: 14.86 kcal Atomic # 7 Polarization: -5.51 SS G_CDS: -3.83 Total: -9.34 kcal Atomic # 8 Polarization: 0.93 SS G_CDS: -1.90 Total: -0.97 kcal Atomic # 9 Polarization: -0.92 SS G_CDS: 0.75 Total: -0.17 kcal Atomic # 14 Polarization: -10.08 SS G_CDS: 2.57 Total: -7.51 kcal Total: -12.17 4.53 -7.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_9630642_17656566.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.453 kcal (2) G-P(sol) polarization free energy of solvation -12.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds