Wall clock time and date at job start Tue Mar 9 2021 13:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38220 * 120.00039 * 2 1 4 4 C 1.38254 * 120.00044 * 180.36613 * 3 2 1 5 5 C 1.50701 * 119.99929 * 179.97438 * 4 3 2 6 6 H 1.08999 * 112.84937 * 11.11055 * 5 4 3 7 7 C 1.53784 * 113.61413 * 142.41022 * 5 4 3 8 8 C 1.53778 * 87.07994 * 139.98483 * 7 5 4 9 9 H 1.09003 * 113.61141 * 220.02551 * 8 7 5 10 10 N 1.46497 * 113.69689 * 89.12848 * 8 7 5 11 11 C 1.38608 * 120.00003 * 107.45729 * 10 8 7 12 12 N 1.29687 * 124.95018 * 0.03410 * 11 10 8 13 13 C 1.32118 * 116.86480 * 179.97438 * 12 11 10 14 14 C 1.33327 * 114.58210 * 359.97438 * 13 12 11 15 15 C 1.50700 * 125.95393 * 180.02562 * 14 13 12 16 16 O 1.42909 * 109.46567 * 300.00066 * 15 14 13 17 17 Si 1.86292 * 109.47292 * 180.02562 * 15 14 13 18 18 S 1.70961 * 124.94732 * 179.72220 * 11 10 8 19 19 C 1.53776 * 113.61376 * 239.90975 * 5 4 3 20 20 C 1.38204 * 119.99840 * 359.86143 * 4 3 2 21 21 C 1.38262 * 120.00497 * 0.09078 * 20 4 3 22 22 C 1.38207 * 119.99568 * 359.97438 * 21 20 4 23 23 H 1.09000 * 109.47344 * 269.72894 * 1 2 3 24 24 H 1.09003 * 109.46871 * 29.72824 * 1 2 3 25 25 H 1.09001 * 109.47017 * 149.72162 * 1 2 3 26 26 H 1.08002 * 119.99604 * 0.27433 * 3 2 1 27 27 H 1.08996 * 113.61451 * 254.53248 * 7 5 4 28 28 H 1.08997 * 113.61061 * 25.43055 * 7 5 4 29 29 H 0.97006 * 119.99759 * 287.47161 * 10 8 7 30 30 H 1.08000 * 122.70945 * 180.02562 * 13 12 11 31 31 H 1.08999 * 109.47614 * 59.99435 * 15 14 13 32 32 H 0.96704 * 113.99640 * 180.02562 * 16 15 14 33 33 H 1.48497 * 110.00301 * 59.99577 * 17 15 14 34 34 H 1.48505 * 109.99985 * 181.31916 * 17 15 14 35 35 H 1.09000 * 113.61382 * 334.56483 * 19 5 4 36 36 H 1.09000 * 113.61672 * 105.47203 * 19 5 4 37 37 H 1.08000 * 119.99746 * 180.02562 * 20 4 3 38 38 H 1.07991 * 120.00010 * 179.97438 * 21 20 4 39 39 H 1.08000 * 120.00334 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1970 0.0000 4 6 3.5807 1.1970 -0.0077 5 6 4.3341 2.5022 -0.0082 6 1 3.6933 3.3610 0.1912 7 6 5.6138 2.4750 0.8442 8 6 6.2799 3.2982 -0.2710 9 1 7.3058 2.9967 -0.4828 10 7 6.1362 4.7460 -0.1000 11 6 7.2284 5.5110 0.2783 12 7 8.4180 5.0468 0.5046 13 6 9.3432 5.9216 0.8570 14 6 8.9151 7.1822 0.9309 15 6 9.7498 8.3795 1.3063 16 8 10.2755 8.1996 2.6229 17 14 8.6914 9.9120 1.2647 18 16 7.2054 7.2051 0.5071 19 6 5.2471 2.6858 -1.2319 20 6 4.2716 0.0001 -0.0124 21 6 3.5804 -1.1973 -0.0114 22 6 2.1983 -1.1973 -0.0051 23 1 -0.3634 -0.0049 1.0276 24 1 -0.3633 0.8924 -0.5096 25 1 -0.3633 -0.8875 -0.5182 26 1 1.6581 2.1323 0.0045 27 1 5.5214 3.0126 1.7878 28 1 6.0377 1.4780 0.9636 29 1 5.2765 5.1693 -0.2513 30 1 10.3640 5.6387 1.0673 31 1 10.5718 8.4858 0.5984 32 1 10.8239 8.9341 2.9311 33 1 7.5674 9.7793 2.2261 34 1 9.5103 11.1040 1.6021 35 1 5.5709 1.7464 -1.6800 36 1 4.8587 3.3935 -1.9643 37 1 5.3516 0.0002 -0.0180 38 1 4.1204 -2.1325 -0.0155 39 1 1.6583 -2.1326 -0.0048 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_9650860_15704118.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:45:44 Heat of formation + Delta-G solvation = 69.820824 kcal Electronic energy + Delta-G solvation = -21104.263453 eV Core-core repulsion = 17912.828787 eV Total energy + Delta-G solvation = -3191.434666 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 303.103 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.41753 -40.47141 -39.30378 -37.89350 -35.39998 -33.42952 -32.05365 -31.11592 -27.85566 -26.87114 -26.69958 -26.04202 -24.34273 -23.05684 -22.31524 -20.87394 -19.89956 -19.15931 -18.57840 -17.83966 -17.34880 -16.76319 -16.32838 -16.14577 -15.94517 -15.57307 -15.46395 -14.99627 -14.75301 -14.65578 -14.28389 -14.04051 -13.96472 -13.86110 -13.52843 -13.10964 -12.92557 -12.83672 -12.63886 -12.37651 -12.28937 -12.17180 -11.83306 -11.69940 -11.23466 -11.02538 -10.63996 -10.22917 -10.09726 -9.65960 -9.43798 -8.67195 -5.06802 0.00208 0.09999 0.44421 0.50879 0.73452 1.24635 1.54076 1.91278 2.08646 2.14765 2.80548 3.35543 3.40473 3.60117 3.66352 3.74697 3.89071 3.97889 3.98937 4.04021 4.15563 4.23834 4.41741 4.45319 4.52321 4.61769 4.69624 4.70691 4.71196 4.77291 4.83141 4.89436 4.97441 4.99193 5.06593 5.17670 5.26028 5.30865 5.60149 5.70387 5.74520 5.92152 6.09575 6.13464 6.41203 7.07702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.084 4.084 3 C -0.118 4.118 4 C -0.067 4.067 5 C -0.074 4.074 6 H 0.095 0.905 7 C -0.145 4.145 8 C 0.137 3.863 9 H 0.108 0.892 10 N -0.675 5.675 11 C 0.326 3.674 12 N -0.548 5.548 13 C 0.119 3.881 14 C -0.261 4.261 15 C -0.018 4.018 16 O -0.534 6.534 17 Si 0.650 3.350 18 S 0.096 5.904 19 C -0.136 4.136 20 C -0.123 4.123 21 C -0.113 4.113 22 C -0.125 4.125 23 H 0.071 0.929 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.119 0.881 27 H 0.073 0.927 28 H 0.096 0.904 29 H 0.414 0.586 30 H 0.175 0.825 31 H 0.084 0.916 32 H 0.381 0.619 33 H -0.239 1.239 34 H -0.241 1.241 35 H 0.100 0.900 36 H 0.077 0.923 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.526 1.295 -2.873 3.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.084 4.084 3 C -0.136 4.136 4 C -0.067 4.067 5 C -0.092 4.092 6 H 0.114 0.886 7 C -0.184 4.184 8 C 0.029 3.971 9 H 0.126 0.874 10 N -0.314 5.314 11 C -0.044 4.044 12 N -0.273 5.273 13 C -0.032 4.032 14 C -0.383 4.383 15 C -0.131 4.131 16 O -0.342 6.342 17 Si 0.549 3.451 18 S 0.345 5.655 19 C -0.174 4.174 20 C -0.141 4.141 21 C -0.131 4.131 22 C -0.143 4.143 23 H 0.089 0.911 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.137 0.863 27 H 0.092 0.908 28 H 0.114 0.886 29 H 0.252 0.748 30 H 0.192 0.808 31 H 0.102 0.898 32 H 0.229 0.771 33 H -0.163 1.163 34 H -0.165 1.165 35 H 0.118 0.882 36 H 0.095 0.905 37 H 0.140 0.860 38 H 0.140 0.860 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.817 1.464 -2.631 4.123 hybrid contribution 1.338 -0.155 1.031 1.697 sum -1.479 1.308 -1.600 2.541 Atomic orbital electron populations 1.20818 0.91138 1.02907 1.02476 1.19949 0.96147 0.93168 0.99131 1.20935 0.93535 0.97570 1.01545 1.19649 0.93376 0.94363 0.99332 1.21596 0.95081 0.95206 0.97351 0.88647 1.23610 0.95267 1.01218 0.98301 1.21886 1.00674 0.78469 0.96110 0.87443 1.43683 1.08063 1.05892 1.73772 1.23674 0.90987 0.92755 0.96979 1.66467 0.98927 1.36890 1.25006 1.21291 0.99271 0.86839 0.95826 1.24311 0.95276 0.99133 1.19615 1.23704 1.00473 1.02669 0.86237 1.86619 1.69867 1.46713 1.30989 0.95259 0.82025 0.76492 0.91278 1.83920 1.08941 1.04166 1.68470 1.23461 0.95738 1.01922 0.96286 1.20988 0.99903 0.91917 1.01264 1.21150 0.94322 0.98070 0.99563 1.21069 0.94363 0.97589 1.01313 0.91073 0.91491 0.91432 0.86250 0.90778 0.88574 0.74840 0.80790 0.89816 0.77100 1.16311 1.16487 0.88182 0.90475 0.85981 0.85984 0.86143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.07 10.01 36.01 0.36 0.43 16 2 C -0.08 -0.09 5.88 -104.62 -0.62 -0.71 16 3 C -0.12 -0.11 9.36 -39.58 -0.37 -0.48 16 4 C -0.07 -0.04 5.29 -104.63 -0.55 -0.59 16 5 C -0.07 0.08 3.86 -90.96 -0.35 -0.27 16 6 H 0.10 -0.17 8.09 -51.93 -0.42 -0.59 16 7 C -0.14 0.07 7.26 -25.92 -0.19 -0.12 16 8 C 0.14 -0.07 4.44 -67.12 -0.30 -0.37 16 9 H 0.11 0.10 7.66 -51.93 -0.40 -0.30 16 10 N -0.68 0.23 5.42 -54.99 -0.30 -0.07 16 11 C 0.33 0.64 8.09 -87.68 -0.71 -0.06 16 12 N -0.55 -2.06 9.83 -15.21 -0.15 -2.21 16 13 C 0.12 0.35 11.22 -19.14 -0.21 0.14 16 14 C -0.26 -0.53 5.78 -36.02 -0.21 -0.74 16 15 C -0.02 -0.01 2.98 36.01 0.11 0.10 16 16 O -0.53 -0.70 12.84 -35.23 -0.45 -1.16 16 17 Si 0.65 -0.24 31.05 -169.99 -5.28 -5.52 16 18 S 0.10 0.09 20.57 -107.50 -2.21 -2.12 16 19 C -0.14 0.23 7.29 -25.92 -0.19 0.04 16 20 C -0.12 -0.08 8.61 -39.58 -0.34 -0.42 16 21 C -0.11 -0.10 10.05 -39.58 -0.40 -0.50 16 22 C -0.13 -0.14 9.70 -39.59 -0.38 -0.52 16 23 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 24 H 0.07 -0.08 8.08 -51.93 -0.42 -0.50 16 25 H 0.07 -0.08 8.09 -51.93 -0.42 -0.50 16 26 H 0.12 -0.06 8.05 -52.49 -0.42 -0.48 16 27 H 0.07 0.05 8.14 -51.93 -0.42 -0.37 16 28 H 0.10 -0.06 6.31 -51.93 -0.33 -0.39 16 29 H 0.41 -1.01 8.83 -40.82 -0.36 -1.37 16 30 H 0.18 0.28 8.06 -52.49 -0.42 -0.14 16 31 H 0.08 -0.14 7.96 -51.93 -0.41 -0.55 16 32 H 0.38 -1.10 8.74 45.56 0.40 -0.71 16 33 H -0.24 -0.67 7.11 56.52 0.40 -0.27 16 34 H -0.24 -0.22 7.11 56.52 0.40 0.18 16 35 H 0.10 -0.17 7.72 -51.93 -0.40 -0.57 16 36 H 0.08 -0.16 8.14 -51.93 -0.42 -0.59 16 37 H 0.12 -0.10 6.66 -52.49 -0.35 -0.45 16 38 H 0.12 -0.09 8.06 -52.49 -0.42 -0.51 16 39 H 0.12 -0.04 8.06 -52.49 -0.42 -0.46 16 LS Contribution 338.55 15.07 5.10 5.10 Total: 0.00 -6.18 338.55 -12.91 -19.08 By element: Atomic # 1 Polarization: -3.78 SS G_CDS: -5.27 Total: -9.05 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: -4.35 Total: -4.07 kcal Atomic # 7 Polarization: -1.83 SS G_CDS: -0.45 Total: -2.28 kcal Atomic # 8 Polarization: -0.70 SS G_CDS: -0.45 Total: -1.16 kcal Atomic # 14 Polarization: -0.24 SS G_CDS: -5.28 Total: -5.52 kcal Atomic # 16 Polarization: 0.09 SS G_CDS: -2.21 Total: -2.12 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -6.18 -12.91 -19.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_9650860_15704118.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.905 kcal (2) G-P(sol) polarization free energy of solvation -6.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds