Wall clock time and date at job start Tue Mar 9 2021 13:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38220 * 120.00039 * 2 1 4 4 C 1.38254 * 120.00044 * 180.36613 * 3 2 1 5 5 C 1.50701 * 119.99929 * 179.97438 * 4 3 2 6 6 H 1.08999 * 112.84937 * 11.11055 * 5 4 3 7 7 C 1.53784 * 113.61413 * 142.41022 * 5 4 3 8 8 C 1.53778 * 87.07994 * 139.98483 * 7 5 4 9 9 H 1.09003 * 113.61141 * 220.02551 * 8 7 5 10 10 N 1.46497 * 113.69689 * 89.12848 * 8 7 5 11 11 C 1.38608 * 120.00003 * 107.45729 * 10 8 7 12 12 N 1.29687 * 124.95018 * 0.03410 * 11 10 8 13 13 C 1.32118 * 116.86480 * 179.97438 * 12 11 10 14 14 C 1.33327 * 114.58210 * 359.97438 * 13 12 11 15 15 C 1.50700 * 125.95393 * 180.02562 * 14 13 12 16 16 O 1.42909 * 109.46567 * 300.00066 * 15 14 13 17 17 Si 1.86292 * 109.47292 * 180.02562 * 15 14 13 18 18 S 1.70961 * 124.94732 * 179.72220 * 11 10 8 19 19 C 1.53776 * 113.61376 * 239.90975 * 5 4 3 20 20 C 1.38204 * 119.99840 * 359.86143 * 4 3 2 21 21 C 1.38262 * 120.00497 * 0.09078 * 20 4 3 22 22 C 1.38207 * 119.99568 * 359.97438 * 21 20 4 23 23 H 1.09000 * 109.47344 * 269.72894 * 1 2 3 24 24 H 1.09003 * 109.46871 * 29.72824 * 1 2 3 25 25 H 1.09001 * 109.47017 * 149.72162 * 1 2 3 26 26 H 1.08002 * 119.99604 * 0.27433 * 3 2 1 27 27 H 1.08996 * 113.61451 * 254.53248 * 7 5 4 28 28 H 1.08997 * 113.61061 * 25.43055 * 7 5 4 29 29 H 0.97006 * 119.99759 * 287.47161 * 10 8 7 30 30 H 1.08000 * 122.70945 * 180.02562 * 13 12 11 31 31 H 1.08999 * 109.47614 * 59.99435 * 15 14 13 32 32 H 0.96704 * 113.99640 * 180.02562 * 16 15 14 33 33 H 1.48497 * 110.00301 * 59.99577 * 17 15 14 34 34 H 1.48505 * 109.99985 * 181.31916 * 17 15 14 35 35 H 1.09000 * 113.61382 * 334.56483 * 19 5 4 36 36 H 1.09000 * 113.61672 * 105.47203 * 19 5 4 37 37 H 1.08000 * 119.99746 * 180.02562 * 20 4 3 38 38 H 1.07991 * 120.00010 * 179.97438 * 21 20 4 39 39 H 1.08000 * 120.00334 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1970 0.0000 4 6 3.5807 1.1970 -0.0077 5 6 4.3341 2.5022 -0.0082 6 1 3.6933 3.3610 0.1912 7 6 5.6138 2.4750 0.8442 8 6 6.2799 3.2982 -0.2710 9 1 7.3058 2.9967 -0.4828 10 7 6.1362 4.7460 -0.1000 11 6 7.2284 5.5110 0.2783 12 7 8.4180 5.0468 0.5046 13 6 9.3432 5.9216 0.8570 14 6 8.9151 7.1822 0.9309 15 6 9.7498 8.3795 1.3063 16 8 10.2755 8.1996 2.6229 17 14 8.6914 9.9120 1.2647 18 16 7.2054 7.2051 0.5071 19 6 5.2471 2.6858 -1.2319 20 6 4.2716 0.0001 -0.0124 21 6 3.5804 -1.1973 -0.0114 22 6 2.1983 -1.1973 -0.0051 23 1 -0.3634 -0.0049 1.0276 24 1 -0.3633 0.8924 -0.5096 25 1 -0.3633 -0.8875 -0.5182 26 1 1.6581 2.1323 0.0045 27 1 5.5214 3.0126 1.7878 28 1 6.0377 1.4780 0.9636 29 1 5.2765 5.1693 -0.2513 30 1 10.3640 5.6387 1.0673 31 1 10.5718 8.4858 0.5984 32 1 10.8239 8.9341 2.9311 33 1 7.5674 9.7793 2.2261 34 1 9.5103 11.1040 1.6021 35 1 5.5709 1.7464 -1.6800 36 1 4.8587 3.3935 -1.9643 37 1 5.3516 0.0002 -0.0180 38 1 4.1204 -2.1325 -0.0155 39 1 1.6583 -2.1326 -0.0048 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_9650860_15704118.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:45:43 Heat of formation + Delta-G solvation = 75.928555 kcal Electronic energy + Delta-G solvation = -21103.998602 eV Core-core repulsion = 17912.828787 eV Total energy + Delta-G solvation = -3191.169815 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 303.103 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.41268 -40.55798 -39.30482 -37.92797 -35.42387 -33.41510 -32.07419 -31.17770 -27.82337 -26.90688 -26.65002 -26.06530 -24.40689 -23.05797 -22.32819 -20.92234 -19.93974 -19.17671 -18.60295 -17.85752 -17.39059 -16.74135 -16.35026 -16.17015 -15.98331 -15.63294 -15.52408 -14.99125 -14.74562 -14.68245 -14.30000 -14.05568 -13.98967 -13.83836 -13.45966 -13.04170 -12.95378 -12.84912 -12.63779 -12.47143 -12.37644 -12.14449 -11.81910 -11.66655 -11.20905 -11.05431 -10.69603 -10.31301 -10.19213 -9.68058 -9.45161 -8.73343 -5.05057 -0.09868 0.01566 0.42221 0.48246 0.63978 1.23368 1.52903 1.88734 1.95323 2.14137 2.78969 3.41932 3.45137 3.60028 3.70093 3.73561 3.93639 3.95754 4.01204 4.07215 4.21168 4.26233 4.47793 4.49271 4.54512 4.63466 4.71003 4.75332 4.77293 4.78827 4.82608 4.92474 5.01114 5.01973 5.07028 5.18605 5.28165 5.30451 5.58545 5.69668 5.73237 5.87686 6.13391 6.15342 6.58989 7.00138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.097 4.097 3 C -0.131 4.131 4 C -0.073 4.073 5 C -0.067 4.067 6 H 0.105 0.895 7 C -0.143 4.143 8 C 0.137 3.863 9 H 0.093 0.907 10 N -0.667 5.667 11 C 0.316 3.684 12 N -0.576 5.576 13 C 0.101 3.899 14 C -0.271 4.271 15 C -0.026 4.026 16 O -0.556 6.556 17 Si 0.719 3.281 18 S 0.117 5.883 19 C -0.124 4.124 20 C -0.133 4.133 21 C -0.125 4.125 22 C -0.141 4.141 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.131 0.869 27 H 0.061 0.939 28 H 0.096 0.904 29 H 0.424 0.576 30 H 0.179 0.821 31 H 0.107 0.893 32 H 0.397 0.603 33 H -0.284 1.284 34 H -0.255 1.255 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.132 0.868 38 H 0.134 0.866 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.769 1.844 -3.463 4.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.097 4.097 3 C -0.149 4.149 4 C -0.073 4.073 5 C -0.085 4.085 6 H 0.123 0.877 7 C -0.182 4.182 8 C 0.029 3.971 9 H 0.111 0.889 10 N -0.307 5.307 11 C -0.054 4.054 12 N -0.302 5.302 13 C -0.049 4.049 14 C -0.394 4.394 15 C -0.138 4.138 16 O -0.367 6.367 17 Si 0.621 3.379 18 S 0.367 5.633 19 C -0.162 4.162 20 C -0.151 4.151 21 C -0.143 4.143 22 C -0.159 4.159 23 H 0.092 0.908 24 H 0.091 0.909 25 H 0.090 0.910 26 H 0.149 0.851 27 H 0.080 0.920 28 H 0.115 0.885 29 H 0.264 0.736 30 H 0.196 0.804 31 H 0.125 0.875 32 H 0.248 0.752 33 H -0.211 1.211 34 H -0.180 1.180 35 H 0.120 0.880 36 H 0.105 0.895 37 H 0.150 0.850 38 H 0.152 0.848 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.058 2.016 -3.236 4.887 hybrid contribution 1.405 -0.330 1.268 1.922 sum -1.653 1.686 -1.968 3.073 Atomic orbital electron populations 1.20838 0.90137 1.03449 1.02798 1.20230 0.97124 0.93320 0.99076 1.21174 0.93903 0.98095 1.01731 1.19844 0.93509 0.94950 0.98998 1.21581 0.94735 0.94874 0.97336 0.87693 1.23583 0.95821 1.01070 0.97763 1.21836 1.00208 0.78389 0.96634 0.88930 1.43725 1.08010 1.05895 1.73035 1.23895 0.91098 0.93562 0.96850 1.66461 0.99745 1.37807 1.26188 1.21443 0.99614 0.87306 0.96584 1.24625 0.96015 0.99507 1.19211 1.23937 1.01330 1.02060 0.86445 1.86571 1.70432 1.48136 1.31529 0.94493 0.78927 0.74910 0.89580 1.83774 1.08267 1.03221 1.68084 1.23388 0.94756 1.02019 0.96045 1.21194 1.00563 0.92018 1.01297 1.21400 0.94548 0.98795 0.99520 1.21301 0.94729 0.98163 1.01677 0.90798 0.90866 0.90992 0.85142 0.92024 0.88539 0.73594 0.80396 0.87498 0.75171 1.21121 1.17967 0.88021 0.89482 0.84995 0.84838 0.85249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.16 10.01 71.24 0.71 0.87 16 2 C -0.10 -0.24 5.88 -19.86 -0.12 -0.35 16 3 C -0.13 -0.24 9.36 22.27 0.21 -0.03 16 4 C -0.07 -0.08 5.29 -19.87 -0.11 -0.19 16 5 C -0.07 0.17 3.86 -11.01 -0.04 0.12 16 6 H 0.10 -0.46 8.09 -2.39 -0.02 -0.47 16 7 C -0.14 0.08 7.26 31.12 0.23 0.30 16 8 C 0.14 -0.10 4.44 45.52 0.20 0.10 16 9 H 0.09 0.26 7.66 -2.39 -0.02 0.24 16 10 N -0.67 0.39 5.42 -327.90 -1.78 -1.38 16 11 C 0.32 1.39 8.09 179.32 1.45 2.84 16 12 N -0.58 -4.86 9.83 -202.03 -1.99 -6.85 16 13 C 0.10 0.68 11.22 83.54 0.94 1.62 16 14 C -0.27 -1.17 5.78 24.57 0.14 -1.02 16 15 C -0.03 0.00 2.98 71.24 0.21 0.21 16 16 O -0.56 -1.40 12.84 -148.98 -1.91 -3.31 16 17 Si 0.72 -0.72 31.05 68.60 2.13 1.41 16 18 S 0.12 0.24 20.57 -56.49 -1.16 -0.92 16 19 C -0.12 0.47 7.29 31.12 0.23 0.70 16 20 C -0.13 -0.20 8.61 22.27 0.19 0.00 16 21 C -0.12 -0.26 10.05 22.27 0.22 -0.04 16 22 C -0.14 -0.36 9.70 22.27 0.22 -0.15 16 23 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 24 H 0.07 -0.20 8.08 -2.39 -0.02 -0.22 16 25 H 0.07 -0.17 8.09 -2.39 -0.02 -0.19 16 26 H 0.13 -0.17 8.05 -2.91 -0.02 -0.19 16 27 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 28 H 0.10 -0.07 6.31 -2.39 -0.02 -0.08 16 29 H 0.42 -2.27 8.83 -92.70 -0.82 -3.09 16 30 H 0.18 0.78 8.06 -2.91 -0.02 0.76 16 31 H 0.11 -0.48 7.96 -2.39 -0.02 -0.50 16 32 H 0.40 -2.45 8.74 -74.05 -0.65 -3.10 16 33 H -0.28 -1.85 7.11 99.48 0.71 -1.14 16 34 H -0.26 -0.31 7.11 99.48 0.71 0.40 16 35 H 0.10 -0.38 7.72 -2.39 -0.02 -0.40 16 36 H 0.09 -0.47 8.14 -2.39 -0.02 -0.49 16 37 H 0.13 -0.18 6.66 -2.91 -0.02 -0.20 16 38 H 0.13 -0.17 8.06 -2.91 -0.02 -0.19 16 39 H 0.13 -0.04 8.06 -2.91 -0.02 -0.06 16 Total: 0.00 -14.69 338.55 -0.38 -15.07 By element: Atomic # 1 Polarization: -8.64 SS G_CDS: -0.35 Total: -8.99 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: 4.69 Total: 4.98 kcal Atomic # 7 Polarization: -4.47 SS G_CDS: -3.76 Total: -8.23 kcal Atomic # 8 Polarization: -1.40 SS G_CDS: -1.91 Total: -3.31 kcal Atomic # 14 Polarization: -0.72 SS G_CDS: 2.13 Total: 1.41 kcal Atomic # 16 Polarization: 0.24 SS G_CDS: -1.16 Total: -0.92 kcal Total: -14.69 -0.38 -15.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_9650860_15704118.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.998 kcal (2) G-P(sol) polarization free energy of solvation -14.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds