Wall clock time and date at job start Tue Mar 9 2021 13:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33330 * 125.94749 * 2 1 4 4 C 1.50696 * 122.71245 * 359.97438 * 3 2 1 5 5 O 1.42901 * 109.47428 * 113.56391 * 4 3 2 6 6 Si 1.86303 * 109.46921 * 233.56372 * 4 3 2 7 7 N 1.32119 * 114.57787 * 180.02562 * 3 2 1 8 8 C 1.29689 * 116.86424 * 359.97438 * 7 3 2 9 9 N 1.38618 * 124.94809 * 179.97438 * 8 7 3 10 10 C 1.46497 * 120.00184 * 180.02562 * 9 8 7 11 11 H 1.09003 * 112.90182 * 336.24715 * 10 9 8 12 12 C 1.53778 * 113.61590 * 107.49413 * 10 9 8 13 13 C 1.53787 * 87.07897 * 89.12119 * 12 10 9 14 14 H 1.09004 * 113.61013 * 270.88467 * 13 12 10 15 15 C 1.50694 * 113.69280 * 139.99089 * 13 12 10 16 16 C 1.38216 * 120.00312 * 322.19351 * 15 13 12 17 17 C 1.38255 * 120.00045 * 179.79101 * 16 15 13 18 18 C 1.38210 * 120.00059 * 0.43532 * 17 16 15 19 19 C 1.38256 * 120.00031 * 359.81361 * 18 17 16 20 20 C 1.50704 * 120.00216 * 179.97438 * 19 18 17 21 21 C 1.38214 * 120.00135 * 359.97438 * 19 18 17 22 22 C 1.53780 * 113.61658 * 204.99904 * 10 9 8 23 23 S 1.70965 * 110.10171 * 0.24613 * 8 7 3 24 24 H 1.09000 * 109.47036 * 84.86838 * 1 2 3 25 25 H 1.09002 * 109.46888 * 204.86477 * 1 2 3 26 26 H 1.09000 * 109.47474 * 324.86824 * 1 2 3 27 27 H 1.09003 * 109.47031 * 353.55791 * 4 3 2 28 28 H 0.96696 * 113.99712 * 59.99890 * 5 4 3 29 29 H 1.48498 * 110.00055 * 58.68021 * 6 4 3 30 30 H 1.48502 * 110.00042 * 179.97438 * 6 4 3 31 31 H 0.97001 * 119.99499 * 359.97438 * 9 8 7 32 32 H 1.09000 * 113.61883 * 203.66150 * 12 10 9 33 33 H 1.08997 * 113.61799 * 334.57658 * 12 10 9 34 34 H 1.08001 * 119.99815 * 359.97438 * 16 15 13 35 35 H 1.07999 * 119.99671 * 180.27608 * 17 16 15 36 36 H 1.08001 * 120.00059 * 179.83734 * 18 17 16 37 37 H 1.08998 * 109.47225 * 269.98243 * 20 19 18 38 38 H 1.09010 * 109.46613 * 29.98163 * 20 19 18 39 39 H 1.08999 * 109.46874 * 149.97867 * 20 19 18 40 40 H 1.08000 * 120.00196 * 179.97438 * 21 19 18 41 41 H 1.08995 * 113.61046 * 25.42773 * 22 10 9 42 42 H 1.08998 * 113.61412 * 156.24753 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2897 1.0794 0.0000 4 6 1.7413 2.4830 -0.0006 5 8 2.0692 3.1231 1.2343 6 14 2.4876 3.4407 -1.4137 7 7 3.5850 0.8189 -0.0005 8 6 3.9314 -0.4308 -0.0005 9 7 5.2385 -0.8925 -0.0015 10 6 5.5067 -2.3327 -0.0019 11 1 4.6811 -2.9180 0.4031 12 6 6.0348 -2.8606 -1.3461 13 6 7.4470 -2.5439 -0.8260 14 1 7.7779 -1.5300 -1.0511 15 6 8.4729 -3.5877 -1.1852 16 6 8.1292 -4.9264 -1.1763 17 6 9.0692 -5.8837 -1.5101 18 6 10.3551 -5.5026 -1.8440 19 6 10.7003 -4.1639 -1.8480 20 6 12.1026 -3.7483 -2.2115 21 6 9.7594 -3.2065 -1.5186 22 6 6.8753 -2.7047 0.5925 23 16 2.5413 -1.4260 -0.0066 24 1 -0.3633 0.0919 -1.0235 25 1 -0.3633 -0.9324 0.4321 26 1 -0.3634 0.8404 0.5914 27 1 0.6580 2.4498 -0.1163 28 1 3.0190 3.1879 1.4036 29 1 2.1807 2.7678 -2.7014 30 1 1.9543 4.8266 -1.4257 31 1 5.9755 -0.2619 -0.0027 32 1 5.8543 -3.9247 -1.4988 33 1 5.7380 -2.2530 -2.2010 34 1 7.1255 -5.2244 -0.9114 35 1 8.7993 -6.9294 -1.5073 36 1 11.0901 -6.2506 -2.1022 37 1 12.7168 -3.7162 -1.3117 38 1 12.5241 -4.4678 -2.9137 39 1 12.0809 -2.7608 -2.6723 40 1 10.0292 -2.1608 -1.5213 41 1 7.2567 -1.9711 1.3027 42 1 6.9239 -3.7256 0.9713 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_9650860_15704122.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:45:47 Heat of formation + Delta-G solvation = 60.911552 kcal Electronic energy + Delta-G solvation = -23150.359480 eV Core-core repulsion = 19803.000860 eV Total energy + Delta-G solvation = -3347.358621 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.119 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.51529 -40.86512 -39.51452 -37.45106 -35.61692 -33.63221 -32.87011 -31.75053 -28.93502 -27.86456 -26.89600 -26.36213 -25.57239 -24.38040 -23.11560 -22.37919 -20.54980 -20.19515 -18.77930 -18.00200 -17.78726 -17.35275 -16.81458 -16.42194 -16.19481 -16.10240 -15.57233 -15.27815 -15.12502 -14.83082 -14.54763 -14.38039 -14.08841 -14.04488 -14.00537 -13.81771 -13.65107 -13.48374 -13.15098 -12.97183 -12.83150 -12.72781 -12.32556 -12.24839 -11.86362 -11.78684 -11.76203 -11.37945 -10.95703 -10.61430 -10.36339 -9.97395 -9.71370 -9.49646 -8.63294 -4.81260 0.01790 0.18977 0.38391 0.45676 0.79203 1.36391 1.76759 1.81502 1.94185 2.10669 2.74291 3.23552 3.40666 3.46652 3.53618 3.69496 3.76123 3.90666 3.97495 4.03017 4.04981 4.17668 4.20628 4.26668 4.41273 4.46024 4.49624 4.55392 4.55898 4.62224 4.67845 4.68806 4.81288 4.84369 4.88355 4.91446 4.93574 5.01636 5.12731 5.21479 5.22516 5.54386 5.60652 5.66839 5.69232 6.07857 6.27638 6.63740 6.93851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.248 4.248 3 C 0.074 3.926 4 C -0.032 4.032 5 O -0.536 6.536 6 Si 0.709 3.291 7 N -0.541 5.541 8 C 0.322 3.678 9 N -0.675 5.675 10 C 0.124 3.876 11 H 0.097 0.903 12 C -0.148 4.148 13 C -0.071 4.071 14 H 0.099 0.901 15 C -0.068 4.068 16 C -0.124 4.124 17 C -0.113 4.113 18 C -0.124 4.124 19 C -0.083 4.083 20 C -0.117 4.117 21 C -0.117 4.117 22 C -0.132 4.132 23 S 0.106 5.894 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.119 0.881 28 H 0.382 0.618 29 H -0.261 1.261 30 H -0.252 1.252 31 H 0.414 0.586 32 H 0.099 0.901 33 H 0.078 0.922 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.120 0.880 41 H 0.081 0.919 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.933 -3.101 -0.281 4.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.371 4.371 3 C -0.057 4.057 4 C -0.146 4.146 5 O -0.342 6.342 6 Si 0.609 3.391 7 N -0.267 5.267 8 C -0.049 4.049 9 N -0.315 5.315 10 C 0.018 3.982 11 H 0.115 0.885 12 C -0.187 4.187 13 C -0.089 4.089 14 H 0.117 0.883 15 C -0.068 4.068 16 C -0.141 4.141 17 C -0.131 4.131 18 C -0.142 4.142 19 C -0.083 4.083 20 C -0.174 4.174 21 C -0.135 4.135 22 C -0.170 4.170 23 S 0.355 5.645 24 H 0.091 0.909 25 H 0.088 0.912 26 H 0.098 0.902 27 H 0.136 0.864 28 H 0.230 0.770 29 H -0.186 1.186 30 H -0.177 1.177 31 H 0.253 0.747 32 H 0.117 0.883 33 H 0.097 0.903 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.138 0.862 41 H 0.099 0.901 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.407 -3.480 -0.981 4.344 hybrid contribution -0.254 0.462 0.238 0.578 sum 2.153 -3.018 -0.743 3.781 Atomic orbital electron populations 1.20193 0.86998 1.03341 1.02669 1.25123 1.01127 0.93364 1.17522 1.20061 0.86924 0.97121 1.01559 1.24724 1.02939 0.89806 0.97107 1.86466 1.29924 1.79523 1.38255 0.93810 0.91349 0.78568 0.75327 1.65953 1.17022 1.16558 1.27129 1.23245 0.91659 0.91581 0.98451 1.43564 1.01782 1.06168 1.79963 1.21984 0.98535 0.79859 0.97831 0.88545 1.23681 0.94868 1.02540 0.97615 1.21555 0.93003 0.98095 0.96283 0.88299 1.19617 0.94150 0.93914 0.99138 1.20967 0.99588 0.92402 1.01191 1.21148 0.93437 0.99519 0.99005 1.21082 0.96680 0.95490 1.00996 1.19959 0.96171 0.93443 0.98731 1.20826 0.92737 1.02047 1.01786 1.20947 0.92694 0.99233 1.00587 1.23420 0.93642 1.03485 0.96443 1.83941 0.96466 1.10183 1.73947 0.90912 0.91155 0.90243 0.86420 0.76971 1.18560 1.17660 0.74750 0.88281 0.90286 0.86054 0.85971 0.86107 0.91013 0.91421 0.91445 0.86154 0.90061 0.87953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.01 9.71 36.01 0.35 0.34 16 2 C -0.25 -0.54 6.57 -36.02 -0.24 -0.77 16 3 C 0.07 0.20 5.19 -84.18 -0.44 -0.24 16 4 C -0.03 -0.06 2.84 36.00 0.10 0.04 16 5 O -0.54 -1.26 12.88 -35.23 -0.45 -1.72 16 6 Si 0.71 0.90 32.62 -169.99 -5.54 -4.65 16 7 N -0.54 -1.33 9.77 -11.36 -0.11 -1.44 16 8 C 0.32 0.44 8.24 -87.67 -0.72 -0.28 16 9 N -0.67 0.71 5.42 -54.99 -0.30 0.41 16 10 C 0.12 -0.29 4.31 -67.12 -0.29 -0.58 16 11 H 0.10 -0.23 7.07 -51.93 -0.37 -0.59 16 12 C -0.15 0.34 7.26 -25.92 -0.19 0.15 16 13 C -0.07 0.16 3.85 -90.96 -0.35 -0.19 16 14 H 0.10 -0.25 8.09 -51.93 -0.42 -0.67 16 15 C -0.07 0.03 5.29 -104.62 -0.55 -0.52 16 16 C -0.12 0.06 8.60 -39.58 -0.34 -0.28 16 17 C -0.11 0.00 10.05 -39.59 -0.40 -0.40 16 18 C -0.12 -0.05 9.70 -39.58 -0.38 -0.44 16 19 C -0.08 -0.04 5.88 -104.62 -0.62 -0.66 16 20 C -0.12 0.13 10.01 36.01 0.36 0.49 16 21 C -0.12 -0.03 9.37 -39.58 -0.37 -0.40 16 22 C -0.13 0.38 7.29 -25.92 -0.19 0.19 16 23 S 0.11 0.10 21.69 -107.50 -2.33 -2.23 16 24 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 25 H 0.07 -0.04 8.14 -51.93 -0.42 -0.47 16 26 H 0.08 -0.01 7.17 -51.93 -0.37 -0.38 16 27 H 0.12 0.14 6.33 -51.93 -0.33 -0.19 16 28 H 0.38 -0.16 8.70 45.56 0.40 0.23 16 29 H -0.26 -1.01 7.11 56.52 0.40 -0.61 16 30 H -0.25 -0.85 7.11 56.52 0.40 -0.45 16 31 H 0.41 -0.81 8.83 -40.82 -0.36 -1.17 16 32 H 0.10 -0.28 6.33 -51.93 -0.33 -0.61 16 33 H 0.08 -0.10 8.14 -51.93 -0.42 -0.52 16 34 H 0.12 -0.26 6.68 -52.49 -0.35 -0.62 16 35 H 0.12 -0.19 8.06 -52.49 -0.42 -0.61 16 36 H 0.12 -0.11 8.06 -52.49 -0.42 -0.53 16 37 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 38 H 0.07 -0.10 8.09 -51.92 -0.42 -0.52 16 39 H 0.07 -0.11 8.09 -51.93 -0.42 -0.53 16 40 H 0.12 -0.13 8.05 -52.49 -0.42 -0.55 16 41 H 0.08 -0.23 8.14 -51.93 -0.42 -0.65 16 42 H 0.10 -0.32 7.72 -51.93 -0.40 -0.72 16 LS Contribution 358.72 15.07 5.41 5.41 Total: 0.00 -5.39 358.72 -13.55 -18.94 By element: Atomic # 1 Polarization: -5.22 SS G_CDS: -5.95 Total: -11.17 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -4.26 Total: -3.56 kcal Atomic # 7 Polarization: -0.62 SS G_CDS: -0.41 Total: -1.03 kcal Atomic # 8 Polarization: -1.26 SS G_CDS: -0.45 Total: -1.72 kcal Atomic # 14 Polarization: 0.90 SS G_CDS: -5.54 Total: -4.65 kcal Atomic # 16 Polarization: 0.10 SS G_CDS: -2.33 Total: -2.23 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -5.39 -13.55 -18.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_9650860_15704122.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.851 kcal (2) G-P(sol) polarization free energy of solvation -5.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds