Wall clock time and date at job start Tue Mar 9 2021 13:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33330 * 125.94749 * 2 1 4 4 C 1.50696 * 122.71245 * 359.97438 * 3 2 1 5 5 O 1.42901 * 109.47428 * 113.56391 * 4 3 2 6 6 Si 1.86303 * 109.46921 * 233.56372 * 4 3 2 7 7 N 1.32119 * 114.57787 * 180.02562 * 3 2 1 8 8 C 1.29689 * 116.86424 * 359.97438 * 7 3 2 9 9 N 1.38618 * 124.94809 * 179.97438 * 8 7 3 10 10 C 1.46497 * 120.00184 * 180.02562 * 9 8 7 11 11 H 1.09003 * 112.90182 * 336.24715 * 10 9 8 12 12 C 1.53778 * 113.61590 * 107.49413 * 10 9 8 13 13 C 1.53787 * 87.07897 * 89.12119 * 12 10 9 14 14 H 1.09004 * 113.61013 * 270.88467 * 13 12 10 15 15 C 1.50694 * 113.69280 * 139.99089 * 13 12 10 16 16 C 1.38216 * 120.00312 * 322.19351 * 15 13 12 17 17 C 1.38255 * 120.00045 * 179.79101 * 16 15 13 18 18 C 1.38210 * 120.00059 * 0.43532 * 17 16 15 19 19 C 1.38256 * 120.00031 * 359.81361 * 18 17 16 20 20 C 1.50704 * 120.00216 * 179.97438 * 19 18 17 21 21 C 1.38214 * 120.00135 * 359.97438 * 19 18 17 22 22 C 1.53780 * 113.61658 * 204.99904 * 10 9 8 23 23 S 1.70965 * 110.10171 * 0.24613 * 8 7 3 24 24 H 1.09000 * 109.47036 * 84.86838 * 1 2 3 25 25 H 1.09002 * 109.46888 * 204.86477 * 1 2 3 26 26 H 1.09000 * 109.47474 * 324.86824 * 1 2 3 27 27 H 1.09003 * 109.47031 * 353.55791 * 4 3 2 28 28 H 0.96696 * 113.99712 * 59.99890 * 5 4 3 29 29 H 1.48498 * 110.00055 * 58.68021 * 6 4 3 30 30 H 1.48502 * 110.00042 * 179.97438 * 6 4 3 31 31 H 0.97001 * 119.99499 * 359.97438 * 9 8 7 32 32 H 1.09000 * 113.61883 * 203.66150 * 12 10 9 33 33 H 1.08997 * 113.61799 * 334.57658 * 12 10 9 34 34 H 1.08001 * 119.99815 * 359.97438 * 16 15 13 35 35 H 1.07999 * 119.99671 * 180.27608 * 17 16 15 36 36 H 1.08001 * 120.00059 * 179.83734 * 18 17 16 37 37 H 1.08998 * 109.47225 * 269.98243 * 20 19 18 38 38 H 1.09010 * 109.46613 * 29.98163 * 20 19 18 39 39 H 1.08999 * 109.46874 * 149.97867 * 20 19 18 40 40 H 1.08000 * 120.00196 * 179.97438 * 21 19 18 41 41 H 1.08995 * 113.61046 * 25.42773 * 22 10 9 42 42 H 1.08998 * 113.61412 * 156.24753 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2897 1.0794 0.0000 4 6 1.7413 2.4830 -0.0006 5 8 2.0692 3.1231 1.2343 6 14 2.4876 3.4407 -1.4137 7 7 3.5850 0.8189 -0.0005 8 6 3.9314 -0.4308 -0.0005 9 7 5.2385 -0.8925 -0.0015 10 6 5.5067 -2.3327 -0.0019 11 1 4.6811 -2.9180 0.4031 12 6 6.0348 -2.8606 -1.3461 13 6 7.4470 -2.5439 -0.8260 14 1 7.7779 -1.5300 -1.0511 15 6 8.4729 -3.5877 -1.1852 16 6 8.1292 -4.9264 -1.1763 17 6 9.0692 -5.8837 -1.5101 18 6 10.3551 -5.5026 -1.8440 19 6 10.7003 -4.1639 -1.8480 20 6 12.1026 -3.7483 -2.2115 21 6 9.7594 -3.2065 -1.5186 22 6 6.8753 -2.7047 0.5925 23 16 2.5413 -1.4260 -0.0066 24 1 -0.3633 0.0919 -1.0235 25 1 -0.3633 -0.9324 0.4321 26 1 -0.3634 0.8404 0.5914 27 1 0.6580 2.4498 -0.1163 28 1 3.0190 3.1879 1.4036 29 1 2.1807 2.7678 -2.7014 30 1 1.9543 4.8266 -1.4257 31 1 5.9755 -0.2619 -0.0027 32 1 5.8543 -3.9247 -1.4988 33 1 5.7380 -2.2530 -2.2010 34 1 7.1255 -5.2244 -0.9114 35 1 8.7993 -6.9294 -1.5073 36 1 11.0901 -6.2506 -2.1022 37 1 12.7168 -3.7162 -1.3117 38 1 12.5241 -4.4678 -2.9137 39 1 12.0809 -2.7608 -2.6723 40 1 10.0292 -2.1608 -1.5213 41 1 7.2567 -1.9711 1.3027 42 1 6.9239 -3.7256 0.9713 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_9650860_15704122.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:45:46 Heat of formation + Delta-G solvation = 68.676910 kcal Electronic energy + Delta-G solvation = -23150.022749 eV Core-core repulsion = 19803.000860 eV Total energy + Delta-G solvation = -3347.021889 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.119 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.42320 -40.90817 -39.43047 -37.55981 -35.60080 -33.57864 -32.84701 -31.69041 -29.00345 -27.77927 -26.70646 -26.29836 -25.59690 -24.41706 -23.04912 -22.29300 -20.59630 -20.10934 -18.78131 -18.00691 -17.83982 -17.33505 -16.70904 -16.47159 -16.12740 -16.05287 -15.64267 -15.34789 -15.06595 -14.74592 -14.45689 -14.30968 -14.23557 -14.09627 -13.96001 -13.74125 -13.54699 -13.42447 -13.04799 -12.95531 -12.81557 -12.66582 -12.46750 -12.15004 -11.92928 -11.74995 -11.64701 -11.25548 -10.92923 -10.69621 -10.47239 -10.04929 -9.66785 -9.43758 -8.65578 -4.94121 -0.06475 0.14002 0.43504 0.49709 0.71068 1.24454 1.60750 1.79168 1.86715 1.95929 2.80182 3.37952 3.41307 3.59969 3.63829 3.67922 3.92044 3.99428 4.00959 4.07343 4.15537 4.18741 4.27636 4.41421 4.41544 4.50595 4.58674 4.65973 4.71004 4.76466 4.79253 4.82483 4.87539 4.91143 4.93644 5.01703 5.03338 5.13981 5.19907 5.23672 5.31145 5.59976 5.66965 5.72864 5.76255 6.15016 6.33856 6.63186 6.88280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.267 4.267 3 C 0.060 3.940 4 C -0.036 4.036 5 O -0.549 6.549 6 Si 0.776 3.224 7 N -0.555 5.555 8 C 0.313 3.687 9 N -0.667 5.667 10 C 0.125 3.875 11 H 0.100 0.900 12 C -0.143 4.143 13 C -0.069 4.069 14 H 0.102 0.898 15 C -0.072 4.072 16 C -0.131 4.131 17 C -0.125 4.125 18 C -0.142 4.142 19 C -0.098 4.098 20 C -0.116 4.116 21 C -0.133 4.133 22 C -0.123 4.123 23 S 0.121 5.879 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.122 0.878 28 H 0.393 0.607 29 H -0.297 1.297 30 H -0.280 1.280 31 H 0.418 0.582 32 H 0.106 0.894 33 H 0.069 0.931 34 H 0.138 0.862 35 H 0.135 0.865 36 H 0.128 0.872 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.128 0.872 41 H 0.083 0.917 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.999 -3.628 0.114 4.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.390 4.390 3 C -0.071 4.071 4 C -0.149 4.149 5 O -0.356 6.356 6 Si 0.681 3.319 7 N -0.282 5.282 8 C -0.058 4.058 9 N -0.307 5.307 10 C 0.019 3.981 11 H 0.118 0.882 12 C -0.183 4.183 13 C -0.087 4.087 14 H 0.120 0.880 15 C -0.072 4.072 16 C -0.149 4.149 17 C -0.142 4.142 18 C -0.160 4.160 19 C -0.098 4.098 20 C -0.173 4.173 21 C -0.151 4.151 22 C -0.161 4.161 23 S 0.370 5.630 24 H 0.098 0.902 25 H 0.096 0.904 26 H 0.099 0.901 27 H 0.139 0.861 28 H 0.243 0.757 29 H -0.224 1.224 30 H -0.207 1.207 31 H 0.258 0.742 32 H 0.125 0.875 33 H 0.088 0.912 34 H 0.156 0.844 35 H 0.153 0.847 36 H 0.146 0.854 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.146 0.854 41 H 0.102 0.898 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.505 -4.021 -0.567 4.771 hybrid contribution -0.258 0.587 0.092 0.648 sum 2.247 -3.434 -0.475 4.131 Atomic orbital electron populations 1.20253 0.85971 1.03813 1.03225 1.25465 1.02203 0.93848 1.17532 1.20200 0.87259 0.97491 1.02125 1.24810 1.03263 0.89760 0.97062 1.86432 1.31116 1.79557 1.38471 0.92976 0.90471 0.75659 0.72843 1.65958 1.17026 1.17146 1.28059 1.23492 0.92576 0.91586 0.98162 1.43668 1.01115 1.06842 1.79064 1.22045 0.98975 0.79118 0.97999 0.88234 1.23659 0.94650 1.02811 0.97133 1.21562 0.92557 0.97793 0.96789 0.88005 1.19825 0.94286 0.94425 0.98650 1.21211 1.00316 0.92371 1.00973 1.21412 0.93483 1.00434 0.98914 1.21301 0.97285 0.95824 1.01550 1.20216 0.96956 0.93702 0.98945 1.20841 0.92110 1.02324 1.02027 1.21175 0.93151 0.99718 1.01010 1.23376 0.92804 1.03884 0.96003 1.83801 0.95930 1.09496 1.73819 0.90220 0.90395 0.90118 0.86052 0.75742 1.22393 1.20716 0.74229 0.87536 0.91244 0.84433 0.84746 0.85402 0.90693 0.91106 0.91051 0.85402 0.89791 0.87353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.02 9.71 71.24 0.69 0.68 16 2 C -0.27 -1.17 6.57 24.58 0.16 -1.01 16 3 C 0.06 0.33 5.19 41.40 0.21 0.55 16 4 C -0.04 -0.14 2.84 71.23 0.20 0.06 16 5 O -0.55 -2.65 12.88 -148.98 -1.92 -4.57 16 6 Si 0.78 2.50 32.62 68.60 2.24 4.74 16 7 N -0.56 -2.78 9.77 -189.86 -1.85 -4.63 16 8 C 0.31 0.79 8.24 179.32 1.48 2.27 16 9 N -0.67 1.73 5.42 -327.90 -1.78 -0.05 16 10 C 0.12 -0.68 4.31 45.52 0.20 -0.49 16 11 H 0.10 -0.57 7.07 -2.39 -0.02 -0.58 16 12 C -0.14 0.76 7.26 31.12 0.23 0.98 16 13 C -0.07 0.34 3.85 -11.01 -0.04 0.30 16 14 H 0.10 -0.56 8.09 -2.38 -0.02 -0.58 16 15 C -0.07 0.08 5.29 -19.87 -0.11 -0.02 16 16 C -0.13 0.18 8.60 22.27 0.19 0.37 16 17 C -0.12 0.00 10.05 22.27 0.22 0.22 16 18 C -0.14 -0.18 9.70 22.27 0.22 0.04 16 19 C -0.10 -0.14 5.88 -19.86 -0.12 -0.26 16 20 C -0.12 0.22 10.01 71.24 0.71 0.93 16 21 C -0.13 -0.09 9.37 22.27 0.21 0.12 16 22 C -0.12 0.83 7.29 31.12 0.23 1.05 16 23 S 0.12 0.21 21.69 -56.49 -1.23 -1.02 16 24 H 0.08 -0.11 8.14 -2.39 -0.02 -0.13 16 25 H 0.08 -0.12 8.14 -2.39 -0.02 -0.14 16 26 H 0.08 -0.02 7.17 -2.39 -0.02 -0.03 16 27 H 0.12 0.33 6.33 -2.39 -0.02 0.31 16 28 H 0.39 -0.31 8.70 -74.06 -0.64 -0.96 16 29 H -0.30 -2.71 7.11 99.48 0.71 -2.00 16 30 H -0.28 -2.17 7.11 99.48 0.71 -1.46 16 31 H 0.42 -1.84 8.83 -92.71 -0.82 -2.65 16 32 H 0.11 -0.71 6.33 -2.39 -0.02 -0.72 16 33 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 34 H 0.14 -0.75 6.68 -2.91 -0.02 -0.77 16 35 H 0.13 -0.46 8.06 -2.91 -0.02 -0.48 16 36 H 0.13 -0.17 8.06 -2.91 -0.02 -0.19 16 37 H 0.07 -0.21 8.14 -2.39 -0.02 -0.22 16 38 H 0.07 -0.20 8.09 -2.38 -0.02 -0.21 16 39 H 0.07 -0.21 8.09 -2.39 -0.02 -0.23 16 40 H 0.13 -0.24 8.05 -2.91 -0.02 -0.26 16 41 H 0.08 -0.57 8.14 -2.39 -0.02 -0.59 16 42 H 0.11 -0.81 7.72 -2.39 -0.02 -0.83 16 Total: 0.00 -12.48 358.72 -0.23 -12.71 By element: Atomic # 1 Polarization: -12.58 SS G_CDS: -0.38 Total: -12.96 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: 4.69 Total: 5.79 kcal Atomic # 7 Polarization: -1.05 SS G_CDS: -3.63 Total: -4.68 kcal Atomic # 8 Polarization: -2.65 SS G_CDS: -1.92 Total: -4.57 kcal Atomic # 14 Polarization: 2.50 SS G_CDS: 2.24 Total: 4.74 kcal Atomic # 16 Polarization: 0.21 SS G_CDS: -1.23 Total: -1.02 kcal Total: -12.48 -0.23 -12.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_9650860_15704122.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.382 kcal (2) G-P(sol) polarization free energy of solvation -12.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds