Wall clock time and date at job start Tue Mar 9 2021 13:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86300 * 109.46955 * 2 1 4 4 C 1.50703 * 109.46967 * 239.99969 * 2 1 3 5 5 C 1.38026 * 120.32983 * 120.00619 * 4 2 1 6 6 N 1.31971 * 120.85083 * 179.97438 * 5 4 2 7 7 C 1.32395 * 121.62495 * 0.02562 * 6 5 4 8 8 N 1.39008 * 119.70501 * 180.02562 * 7 6 5 9 9 C 1.46507 * 119.99647 * 180.02562 * 8 7 6 10 10 H 1.08999 * 112.84974 * 23.80139 * 9 8 7 11 11 C 1.53779 * 113.61237 * 154.99979 * 9 8 7 12 12 C 1.53781 * 87.08059 * 89.19877 * 11 9 8 13 13 H 1.09001 * 113.61137 * 270.79868 * 12 11 9 14 14 C 1.50701 * 113.61463 * 139.98284 * 12 11 9 15 15 C 1.38226 * 119.97181 * 120.00132 * 14 12 11 16 16 C 1.38231 * 120.04093 * 180.30133 * 15 14 12 17 17 C 1.38410 * 119.98645 * 359.41710 * 16 15 14 18 18 F 1.35098 * 120.03221 * 180.27447 * 17 16 15 19 19 C 1.38566 * 119.93936 * 0.58107 * 17 16 15 20 20 Br 1.89098 * 120.02128 * 179.74250 * 19 17 16 21 21 C 1.38254 * 119.95722 * 359.72004 * 19 17 16 22 22 C 1.53776 * 87.08115 * 25.43022 * 12 11 9 23 23 C 1.39141 * 120.59007 * 0.27334 * 7 6 5 24 24 C 1.38306 * 119.08993 * 359.44018 * 23 7 6 25 25 H 0.96706 * 113.99546 * 60.00232 * 1 2 3 26 26 H 1.08996 * 109.46574 * 120.00090 * 2 1 3 27 27 H 1.48498 * 110.00436 * 298.67898 * 3 2 1 28 28 H 1.48503 * 110.00064 * 59.99805 * 3 2 1 29 29 H 1.07990 * 119.57479 * 0.02562 * 5 4 2 30 30 H 0.96992 * 120.00152 * 0.02562 * 8 7 6 31 31 H 1.09000 * 113.61406 * 334.65338 * 11 9 8 32 32 H 1.08994 * 113.69220 * 203.75486 * 11 9 8 33 33 H 1.08002 * 119.97540 * 0.02562 * 15 14 12 34 34 H 1.08005 * 120.00592 * 179.70378 * 16 15 14 35 35 H 1.07997 * 119.99493 * 180.02562 * 21 19 17 36 36 H 1.09000 * 113.60987 * 89.11788 * 22 12 11 37 37 H 1.09001 * 113.61389 * 220.01474 * 22 12 11 38 38 H 1.07993 * 120.45486 * 179.70345 * 23 7 6 39 39 H 1.08003 * 120.73956 * 180.25930 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 2.7254 -0.0463 -2.1435 6 7 3.1713 -0.6585 -3.2242 7 6 2.8776 -1.9247 -3.4758 8 7 3.3693 -2.5304 -4.6263 9 6 3.0478 -3.9311 -4.9113 10 1 2.1324 -4.2633 -4.4216 11 6 3.1102 -4.2854 -6.4064 12 6 4.5952 -4.6180 -6.1851 13 1 5.2589 -3.7643 -6.3225 14 6 5.0568 -5.8441 -6.9299 15 6 6.0726 -5.7442 -7.8619 16 6 6.4929 -6.8668 -8.5504 17 6 5.9046 -8.0938 -8.2977 18 9 6.3184 -9.1926 -8.9661 19 6 4.8863 -8.1932 -7.3632 20 35 4.0759 -9.8672 -7.0215 21 6 4.4635 -7.0678 -6.6805 22 6 4.2342 -4.8895 -4.7152 23 6 2.0769 -2.6531 -2.6015 24 6 1.5999 -2.0398 -1.4573 25 1 -0.3933 0.4417 -0.7651 26 1 1.7923 -0.5138 0.8900 27 1 1.5880 2.4586 -1.2242 28 1 1.5614 2.4679 1.2085 29 1 2.9858 0.9875 -1.9708 30 1 3.9252 -2.0258 -5.2404 31 1 2.9473 -3.4320 -7.0646 32 1 2.5048 -5.1504 -6.6771 33 1 6.5352 -4.7876 -8.0556 34 1 7.2834 -6.7872 -9.2820 35 1 3.6703 -7.1446 -5.9517 36 1 3.9358 -5.9199 -4.5221 37 1 4.9787 -4.5239 -4.0080 38 1 1.8348 -3.6844 -2.8113 39 1 0.9798 -2.5814 -0.7583 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_9650942_13915762.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:45:58 Heat of formation + Delta-G solvation = 36.362433 kcal Electronic energy + Delta-G solvation = -24747.254494 eV Core-core repulsion = 20811.482357 eV Total energy + Delta-G solvation = -3935.772137 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 379.032 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -50.08639 -41.68082 -40.98418 -39.24668 -37.95044 -35.34749 -33.59293 -33.37206 -31.97523 -30.80832 -30.36538 -26.77610 -26.68146 -25.72367 -24.75254 -24.05986 -22.92678 -22.29103 -20.15812 -19.03064 -18.75154 -18.51758 -17.69988 -17.42118 -16.88282 -16.86054 -16.44054 -16.26742 -16.05478 -15.68586 -15.36248 -15.20877 -14.85882 -14.65718 -14.38069 -14.30734 -14.02733 -13.98113 -13.84515 -13.46491 -13.30742 -13.27830 -12.50232 -12.32317 -12.19329 -12.05430 -11.95896 -11.64667 -11.41183 -11.23139 -11.04151 -10.72606 -10.52031 -10.37442 -10.03109 -9.60599 -8.67025 -4.90307 -0.18408 0.00003 0.24824 0.42610 0.43181 1.35188 1.61628 1.97784 2.08366 2.30169 2.83920 3.02514 3.41545 3.45992 3.56264 3.61474 3.65382 3.70514 3.80512 3.93763 4.00404 4.04811 4.07598 4.10896 4.23991 4.38024 4.43426 4.57989 4.66131 4.76828 4.78989 4.80453 4.85275 4.86873 4.99043 5.02879 5.05584 5.09137 5.21312 5.35240 5.44350 5.59546 5.64482 6.08662 6.51342 6.57760 7.17261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.063 4.063 3 Si 0.756 3.244 4 C -0.234 4.234 5 C 0.146 3.854 6 N -0.564 5.564 7 C 0.398 3.602 8 N -0.700 5.700 9 C 0.128 3.872 10 H 0.107 0.893 11 C -0.130 4.130 12 C -0.066 4.066 13 H 0.114 0.886 14 C -0.071 4.071 15 C -0.068 4.068 16 C -0.146 4.146 17 C 0.094 3.906 18 F -0.140 7.140 19 C -0.142 4.142 20 Br -0.041 7.041 21 C -0.062 4.062 22 C -0.146 4.146 23 C -0.241 4.241 24 C -0.013 4.013 25 H 0.385 0.615 26 H 0.125 0.875 27 H -0.284 1.284 28 H -0.302 1.302 29 H 0.166 0.834 30 H 0.408 0.592 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.165 0.835 34 H 0.159 0.841 35 H 0.157 0.843 36 H 0.103 0.897 37 H 0.071 0.929 38 H 0.152 0.848 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.544 1.870 -0.293 2.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.173 4.173 3 Si 0.662 3.338 4 C -0.240 4.240 5 C -0.011 4.011 6 N -0.282 5.282 7 C 0.162 3.838 8 N -0.332 5.332 9 C 0.022 3.978 10 H 0.125 0.875 11 C -0.168 4.168 12 C -0.084 4.084 13 H 0.132 0.868 14 C -0.072 4.072 15 C -0.086 4.086 16 C -0.165 4.165 17 C 0.073 3.927 18 F -0.119 7.119 19 C -0.222 4.222 20 Br 0.044 6.956 21 C -0.082 4.082 22 C -0.185 4.185 23 C -0.265 4.265 24 C -0.039 4.039 25 H 0.234 0.766 26 H 0.143 0.857 27 H -0.211 1.211 28 H -0.230 1.230 29 H 0.183 0.817 30 H 0.245 0.755 31 H 0.100 0.900 32 H 0.124 0.876 33 H 0.183 0.817 34 H 0.177 0.823 35 H 0.175 0.825 36 H 0.121 0.879 37 H 0.089 0.911 38 H 0.169 0.831 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.598 1.954 -0.274 2.539 hybrid contribution -1.043 -0.478 -0.497 1.250 sum 0.556 1.476 -0.771 1.755 Atomic orbital electron populations 1.86565 1.18739 1.80268 1.50142 1.24891 0.83125 1.11031 0.98231 0.94261 0.90511 0.72631 0.76446 1.20959 1.05919 0.96691 1.00395 1.22433 0.91631 0.99286 0.87761 1.67145 1.28357 1.09888 1.22799 1.18605 0.89358 0.88330 0.87464 1.44217 1.55470 1.11431 1.22041 1.21935 0.98703 0.79853 0.97322 0.87532 1.23432 0.95143 1.02969 0.95276 1.21616 0.97240 0.94765 0.94801 0.86841 1.19960 0.95799 0.94436 0.96993 1.21437 0.94906 0.99097 0.93199 1.21443 1.02106 0.90284 1.02704 1.17778 0.96383 0.84360 0.94182 1.91529 1.89211 1.52424 1.78719 1.22091 1.01686 0.94549 1.03883 1.96801 1.80199 1.23503 1.95089 1.21068 0.99495 0.89708 0.97898 1.23671 0.98518 1.00711 0.95630 1.21708 1.04859 1.02823 0.97127 1.21400 0.93943 0.93311 0.95250 0.76641 0.85717 1.21106 1.22986 0.81710 0.75537 0.89979 0.87628 0.81716 0.82343 0.82519 0.87872 0.91062 0.83076 0.83787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.94 12.78 -148.98 -1.90 -2.84 16 2 C -0.06 0.08 2.84 71.24 0.20 0.28 16 3 Si 0.76 -1.53 29.82 68.60 2.05 0.51 16 4 C -0.23 0.03 5.40 -19.76 -0.11 -0.08 16 5 C 0.15 0.17 9.84 84.62 0.83 1.01 16 6 N -0.56 -2.14 10.39 -193.26 -2.01 -4.15 16 7 C 0.40 0.32 7.65 133.06 1.02 1.34 16 8 N -0.70 2.89 5.44 -322.03 -1.75 1.14 16 9 C 0.13 -1.05 4.11 45.51 0.19 -0.86 16 10 H 0.11 -0.97 6.09 -2.39 -0.01 -0.99 16 11 C -0.13 1.25 7.29 31.12 0.23 1.48 16 12 C -0.07 0.61 3.86 -11.02 -0.04 0.56 16 13 H 0.11 -1.20 8.09 -2.39 -0.02 -1.22 16 14 C -0.07 0.42 5.29 -19.86 -0.11 0.31 16 15 C -0.07 0.40 9.71 22.27 0.22 0.62 16 16 C -0.15 0.32 10.03 22.31 0.22 0.54 16 17 C 0.09 0.28 7.27 22.39 0.16 0.44 16 18 F -0.14 -0.97 16.73 44.97 0.75 -0.22 16 19 C -0.14 -0.24 6.23 22.35 0.14 -0.10 16 20 Br -0.04 -0.14 33.28 -20.37 -0.68 -0.82 16 21 C -0.06 0.21 8.35 22.28 0.19 0.40 16 22 C -0.15 1.25 7.25 31.12 0.23 1.48 16 23 C -0.24 0.27 9.29 22.50 0.21 0.48 16 24 C -0.01 0.01 9.76 22.44 0.22 0.23 16 25 H 0.38 -1.29 8.70 -74.05 -0.64 -1.94 16 26 H 0.13 -0.39 7.96 -2.39 -0.02 -0.41 16 27 H -0.28 -0.62 7.11 99.48 0.71 0.09 16 28 H -0.30 -1.71 7.11 99.48 0.71 -1.01 16 29 H 0.17 -0.41 4.88 -2.92 -0.01 -0.43 16 30 H 0.41 -2.02 8.83 -92.71 -0.82 -2.84 16 31 H 0.08 -0.74 8.14 -2.39 -0.02 -0.76 16 32 H 0.11 -1.07 7.72 -2.39 -0.02 -1.09 16 33 H 0.17 -1.83 8.05 -2.91 -0.02 -1.85 16 34 H 0.16 -0.87 8.06 -2.91 -0.02 -0.90 16 35 H 0.16 -1.09 6.66 -2.91 -0.02 -1.10 16 36 H 0.10 -1.01 6.31 -2.39 -0.02 -1.02 16 37 H 0.07 -0.42 8.14 -2.39 -0.02 -0.44 16 38 H 0.15 -0.81 6.03 -2.91 -0.02 -0.83 16 39 H 0.14 -0.39 8.06 -2.91 -0.02 -0.41 16 Total: 0.00 -15.34 348.54 -0.05 -15.38 By element: Atomic # 1 Polarization: -16.84 SS G_CDS: -0.30 Total: -17.14 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: 3.79 Total: 8.13 kcal Atomic # 7 Polarization: 0.75 SS G_CDS: -3.76 Total: -3.01 kcal Atomic # 8 Polarization: -0.94 SS G_CDS: -1.90 Total: -2.84 kcal Atomic # 9 Polarization: -0.97 SS G_CDS: 0.75 Total: -0.22 kcal Atomic # 14 Polarization: -1.53 SS G_CDS: 2.05 Total: 0.51 kcal Atomic # 35 Polarization: -0.14 SS G_CDS: -0.68 Total: -0.82 kcal Total: -15.34 -0.05 -15.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_9650942_13915762.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.747 kcal (2) G-P(sol) polarization free energy of solvation -15.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds