Wall clock time and date at job start Tue Mar 9 2021 13:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86306 * 109.46954 * 2 1 4 4 C 1.50698 * 109.47484 * 239.99992 * 2 1 3 5 5 C 1.37985 * 120.33046 * 119.99545 * 4 2 1 6 6 N 1.32008 * 120.90030 * 180.02562 * 5 4 2 7 7 C 1.32336 * 121.64859 * 0.02562 * 6 5 4 8 8 N 1.39140 * 119.71540 * 179.97438 * 7 6 5 9 9 C 1.46506 * 120.00046 * 359.97438 * 8 7 6 10 10 H 1.08992 * 112.90684 * 336.24929 * 9 8 7 11 11 C 1.54049 * 113.61276 * 107.62018 * 9 8 7 12 12 C 1.53781 * 87.08031 * 89.07129 * 11 9 8 13 13 H 1.08999 * 113.61181 * 270.87794 * 12 11 9 14 14 C 1.50696 * 113.69134 * 139.98880 * 12 11 9 15 15 C 1.38225 * 119.96963 * 322.18543 * 14 12 11 16 16 C 1.38238 * 120.04157 * 179.77080 * 15 14 12 17 17 C 1.38408 * 119.98455 * 0.50713 * 16 15 14 18 18 F 1.35106 * 120.03029 * 179.76909 * 17 16 15 19 19 C 1.38564 * 119.94032 * 359.74771 * 17 16 15 20 20 Br 1.89101 * 120.02281 * 180.02562 * 19 17 16 21 21 C 1.38256 * 119.97136 * 142.46807 * 14 12 11 22 22 C 1.53781 * 87.08070 * 25.42738 * 12 11 9 23 23 C 1.39336 * 120.56400 * 0.24810 * 7 6 5 24 24 F 1.35101 * 120.47210 * 179.72564 * 23 7 6 25 25 C 1.38447 * 119.05729 * 359.50000 * 23 7 6 26 26 H 0.96696 * 114.00241 * 60.00524 * 1 2 3 27 27 H 1.09001 * 109.47293 * 119.99758 * 2 1 3 28 28 H 1.48492 * 110.00017 * 59.99899 * 3 2 1 29 29 H 1.48496 * 110.00002 * 181.32085 * 3 2 1 30 30 H 1.07995 * 119.54589 * 0.02562 * 5 4 2 31 31 H 0.97002 * 120.00066 * 179.97438 * 8 7 6 32 32 H 1.09005 * 113.62125 * 334.52173 * 11 9 8 33 33 H 1.08996 * 113.68970 * 203.62749 * 11 9 8 34 34 H 1.07994 * 119.97612 * 0.02598 * 15 14 12 35 35 H 1.08002 * 120.00660 * 180.28025 * 16 15 14 36 36 H 1.08000 * 119.99356 * 359.95029 * 21 14 12 37 37 H 1.09002 * 113.61445 * 89.11830 * 22 12 11 38 38 H 1.09002 * 113.61408 * 219.93560 * 22 12 11 39 39 H 1.08004 * 120.75779 * 180.24494 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 2.7250 -0.0463 -2.1432 6 7 3.1709 -0.6575 -3.2250 7 6 2.8776 -1.9228 -3.4783 8 7 3.3688 -2.5271 -4.6314 9 6 4.2064 -1.7629 -5.5591 10 1 4.0474 -0.6871 -5.4863 11 6 5.6911 -2.1726 -5.5306 12 6 5.3444 -3.2094 -6.6122 13 1 5.0319 -4.1728 -6.2093 14 6 6.3930 -3.3370 -7.6869 15 6 7.0575 -2.2129 -8.1402 16 6 8.0230 -2.3288 -9.1227 17 6 8.3173 -3.5698 -9.6603 18 9 9.2575 -3.6836 -10.6239 19 6 7.6471 -4.6955 -9.2091 20 35 8.0478 -6.3923 -9.9415 21 6 6.6855 -4.5775 -8.2227 22 6 4.1712 -2.2946 -7.0016 23 6 2.0764 -2.6533 -2.6032 24 9 1.7735 -3.9434 -2.8665 25 6 1.5989 -2.0398 -1.4576 26 1 -0.3933 0.4416 -0.7650 27 1 1.7923 -0.5138 0.8900 28 1 1.5614 2.4679 1.2084 29 1 3.5345 1.7704 -0.0322 30 1 2.9849 0.9875 -1.9701 31 1 3.1567 -3.4545 -4.8210 32 1 6.0038 -2.6159 -4.5851 33 1 6.3678 -1.3911 -5.8760 34 1 6.8250 -1.2440 -7.7237 35 1 8.5450 -1.4507 -9.4733 36 1 6.1630 -5.4546 -7.8704 37 1 4.4312 -1.5456 -7.7496 38 1 3.2573 -2.8365 -7.2451 39 1 0.9790 -2.5814 -0.7584 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_9650942_17656566.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:46:08 Heat of formation + Delta-G solvation = -8.902996 kcal Electronic energy + Delta-G solvation = -27198.459570 eV Core-core repulsion = 22791.270601 eV Total energy + Delta-G solvation = -4407.188969 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 397.023 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -50.08817 -49.94815 -41.63228 -41.02524 -39.24419 -37.85365 -35.46179 -33.49842 -33.17213 -32.15388 -31.00288 -30.16308 -26.81811 -26.61875 -25.98718 -24.76694 -24.10088 -22.99586 -22.51355 -20.21423 -19.47299 -18.86467 -18.46943 -18.21507 -17.67030 -17.48208 -17.03407 -16.90508 -16.86233 -16.26443 -16.04663 -15.88044 -15.56578 -15.37518 -15.05025 -14.83302 -14.68257 -14.34105 -14.31702 -14.21468 -14.03352 -13.71335 -13.49425 -13.37576 -13.25565 -12.56082 -12.36632 -12.24593 -12.11001 -11.96875 -11.68426 -11.47348 -11.23268 -11.08934 -10.69598 -10.64207 -10.39042 -10.04460 -9.61229 -8.74475 -4.95076 -0.20065 -0.07198 0.00225 0.11567 0.41854 1.34087 1.68114 1.96507 2.02635 2.29389 2.55395 3.01744 3.03767 3.27271 3.46450 3.49460 3.53330 3.68141 3.70545 3.73398 3.87835 3.95847 4.00415 4.04400 4.10871 4.15499 4.44829 4.48870 4.53241 4.68411 4.73596 4.78994 4.81329 4.84421 4.88133 4.98990 5.00591 5.05153 5.10397 5.18166 5.39814 5.50605 5.64036 6.03751 6.20644 6.80977 6.96751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.060 4.060 3 Si 0.776 3.224 4 C -0.206 4.206 5 C 0.148 3.852 6 N -0.521 5.521 7 C 0.386 3.614 8 N -0.697 5.697 9 C 0.132 3.868 10 H 0.109 0.891 11 C -0.141 4.141 12 C -0.070 4.070 13 H 0.103 0.897 14 C -0.069 4.069 15 C -0.066 4.066 16 C -0.142 4.142 17 C 0.095 3.905 18 F -0.140 7.140 19 C -0.143 4.143 20 Br -0.044 7.044 21 C -0.067 4.067 22 C -0.128 4.128 23 C -0.038 4.038 24 F -0.142 7.142 25 C -0.042 4.042 26 H 0.396 0.604 27 H 0.110 0.890 28 H -0.300 1.300 29 H -0.278 1.278 30 H 0.184 0.816 31 H 0.415 0.585 32 H 0.062 0.938 33 H 0.109 0.891 34 H 0.170 0.830 35 H 0.163 0.837 36 H 0.150 0.850 37 H 0.112 0.888 38 H 0.079 0.921 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.504 5.339 0.166 5.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.365 6.365 2 C -0.171 4.171 3 Si 0.682 3.318 4 C -0.211 4.211 5 C -0.009 4.009 6 N -0.238 5.238 7 C 0.147 3.853 8 N -0.330 5.330 9 C 0.027 3.973 10 H 0.127 0.873 11 C -0.180 4.180 12 C -0.089 4.089 13 H 0.121 0.879 14 C -0.070 4.070 15 C -0.084 4.084 16 C -0.161 4.161 17 C 0.074 3.926 18 F -0.118 7.118 19 C -0.223 4.223 20 Br 0.041 6.959 21 C -0.086 4.086 22 C -0.166 4.166 23 C -0.065 4.065 24 F -0.121 7.121 25 C -0.068 4.068 26 H 0.246 0.754 27 H 0.127 0.873 28 H -0.227 1.227 29 H -0.204 1.204 30 H 0.201 0.799 31 H 0.253 0.747 32 H 0.081 0.919 33 H 0.128 0.872 34 H 0.188 0.812 35 H 0.181 0.819 36 H 0.168 0.832 37 H 0.131 0.869 38 H 0.097 0.903 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.132 5.463 0.064 5.579 hybrid contribution -0.269 -1.935 0.600 2.044 sum -1.400 3.528 0.663 3.853 Atomic orbital electron populations 1.86476 1.17268 1.82150 1.50564 1.25003 0.85222 1.10711 0.96128 0.93801 0.78024 0.74673 0.85304 1.20988 1.04577 0.94849 1.00735 1.22706 0.91018 0.99890 0.87285 1.67340 1.26737 1.07380 1.22355 1.18513 0.89989 0.89239 0.87524 1.44310 1.53976 1.14611 1.20066 1.21902 0.89772 0.97155 0.88512 0.87337 1.23672 0.97210 0.98790 0.98307 1.21615 0.93870 0.99748 0.93618 0.87922 1.19939 0.97650 0.92016 0.97437 1.21368 0.92829 1.00295 0.93914 1.21457 1.00427 0.95648 0.98595 1.17777 0.90162 0.94559 0.90128 1.91532 1.62534 1.96825 1.60933 1.22105 1.04595 0.91197 1.04436 1.96792 1.94349 1.20462 1.84249 1.21126 0.94608 0.99521 0.93355 1.23457 0.97955 0.99222 0.95975 1.18148 1.07821 0.80963 0.99546 1.91468 1.92254 1.34318 1.94030 1.21421 0.96163 0.94799 0.94443 0.75395 0.87298 1.22747 1.20432 0.79935 0.74670 0.91949 0.87233 0.81247 0.81921 0.83245 0.86931 0.90269 0.83085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.41 12.78 -148.98 -1.90 -0.49 16 2 C -0.06 0.22 2.84 71.24 0.20 0.42 16 3 Si 0.78 -4.36 29.82 68.60 2.05 -2.31 16 4 C -0.21 0.49 5.40 -19.76 -0.11 0.38 16 5 C 0.15 -0.42 9.84 84.61 0.83 0.42 16 6 N -0.52 -0.14 9.13 -193.05 -1.76 -1.90 16 7 C 0.39 0.29 7.49 133.08 1.00 1.29 16 8 N -0.70 2.14 5.42 -321.35 -1.74 0.40 16 9 C 0.13 -0.81 4.37 45.61 0.20 -0.61 16 10 H 0.11 -0.54 7.41 -2.39 -0.02 -0.55 16 11 C -0.14 0.99 7.27 31.21 0.23 1.22 16 12 C -0.07 0.53 3.85 -11.01 -0.04 0.49 16 13 H 0.10 -0.79 8.09 -2.39 -0.02 -0.80 16 14 C -0.07 0.33 5.29 -19.86 -0.11 0.22 16 15 C -0.07 0.40 8.59 22.27 0.19 0.59 16 16 C -0.14 0.35 10.03 22.31 0.22 0.57 16 17 C 0.09 0.33 7.27 22.39 0.16 0.49 16 18 F -0.14 -1.02 16.73 44.97 0.75 -0.26 16 19 C -0.14 -0.45 6.23 22.35 0.14 -0.31 16 20 Br -0.04 -0.22 33.29 -20.37 -0.68 -0.90 16 21 C -0.07 0.08 9.45 22.28 0.21 0.29 16 22 C -0.13 1.12 7.28 31.12 0.23 1.35 16 23 C -0.04 -0.08 7.35 22.58 0.17 0.09 16 24 F -0.14 -0.52 16.65 44.97 0.75 0.23 16 25 C -0.04 -0.01 9.75 22.48 0.22 0.21 16 26 H 0.40 -4.17 8.70 -74.06 -0.64 -4.82 16 27 H 0.11 -0.27 7.96 -2.39 -0.02 -0.29 16 28 H -0.30 -0.77 7.11 99.48 0.71 -0.06 16 29 H -0.28 0.43 7.11 99.48 0.71 1.13 16 30 H 0.18 -1.46 4.88 -2.91 -0.01 -1.47 16 31 H 0.42 -1.91 8.17 -92.71 -0.76 -2.67 16 32 H 0.06 -0.22 8.14 -2.38 -0.02 -0.24 16 33 H 0.11 -1.05 6.33 -2.39 -0.02 -1.07 16 34 H 0.17 -2.03 6.68 -2.91 -0.02 -2.05 16 35 H 0.16 -1.04 8.06 -2.91 -0.02 -1.06 16 36 H 0.15 -0.53 8.05 -2.91 -0.02 -0.55 16 37 H 0.11 -1.20 7.71 -2.39 -0.02 -1.22 16 38 H 0.08 -0.64 8.14 -2.39 -0.02 -0.66 16 39 H 0.15 -0.12 8.06 -2.91 -0.02 -0.15 16 Total: 0.00 -15.64 356.69 0.98 -14.66 By element: Atomic # 1 Polarization: -16.31 SS G_CDS: -0.22 Total: -16.53 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: 3.74 Total: 7.09 kcal Atomic # 7 Polarization: 2.01 SS G_CDS: -3.50 Total: -1.50 kcal Atomic # 8 Polarization: 1.41 SS G_CDS: -1.90 Total: -0.49 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 1.50 Total: -0.03 kcal Atomic # 14 Polarization: -4.36 SS G_CDS: 2.05 Total: -2.31 kcal Atomic # 35 Polarization: -0.22 SS G_CDS: -0.68 Total: -0.90 kcal Total: -15.64 0.98 -14.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_9650942_17656566.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.757 kcal (2) G-P(sol) polarization free energy of solvation -15.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds