Wall clock time and date at job start Tue Mar 9 2021 13:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33331 * 125.95275 * 2 1 4 4 C 1.50700 * 122.70938 * 359.97438 * 3 2 1 5 5 O 1.42900 * 109.47291 * 329.99664 * 4 3 2 6 6 Si 1.86303 * 109.47087 * 209.99762 * 4 3 2 7 7 H 1.48500 * 109.46986 * 59.99870 * 6 4 3 8 8 H 1.48502 * 109.46933 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47153 * 300.00047 * 6 4 3 10 10 N 1.32115 * 114.58076 * 179.97438 * 3 2 1 11 11 C 1.29694 * 116.86485 * 0.02562 * 10 3 2 12 12 N 1.38609 * 124.94873 * 180.02562 * 11 10 3 13 13 C 1.46493 * 120.00234 * 179.97438 * 12 11 10 14 14 C 1.52998 * 109.47643 * 180.02562 * 13 12 11 15 15 C 1.52996 * 109.47588 * 180.02562 * 14 13 12 16 16 Si 1.86294 * 109.47300 * 179.97438 * 15 14 13 17 17 C 1.86308 * 109.47134 * 60.00529 * 16 15 14 18 18 C 1.86302 * 109.47363 * 179.97438 * 16 15 14 19 19 C 1.86291 * 109.47507 * 300.00233 * 16 15 14 20 20 S 1.70958 * 110.10068 * 359.97438 * 11 10 3 21 21 H 1.08991 * 109.47007 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.46856 * 300.03082 * 1 2 3 23 23 H 1.09003 * 109.46759 * 60.02612 * 1 2 3 24 24 H 1.09001 * 109.47000 * 89.99918 * 4 3 2 25 25 H 0.96698 * 113.99858 * 300.00706 * 5 4 3 26 26 H 0.97008 * 120.00299 * 359.97438 * 12 11 10 27 27 H 1.08998 * 109.47449 * 300.00154 * 13 12 11 28 28 H 1.09007 * 109.46794 * 60.00111 * 13 12 11 29 29 H 1.09012 * 109.46968 * 300.00397 * 14 13 12 30 30 H 1.08999 * 109.47209 * 59.99841 * 14 13 12 31 31 H 1.08998 * 109.47449 * 299.99974 * 15 14 13 32 32 H 1.09007 * 109.46849 * 59.99965 * 15 14 13 33 33 H 1.09001 * 109.46984 * 59.99236 * 17 16 15 34 34 H 1.08992 * 109.47378 * 180.02562 * 17 16 15 35 35 H 1.09005 * 109.46260 * 299.99845 * 17 16 15 36 36 H 1.08999 * 109.46944 * 59.99996 * 18 16 15 37 37 H 1.08996 * 109.47461 * 180.02562 * 18 16 15 38 38 H 1.09003 * 109.47409 * 300.00810 * 18 16 15 39 39 H 1.08997 * 109.47532 * 59.99852 * 19 16 15 40 40 H 1.09005 * 109.47517 * 179.97438 * 19 16 15 41 41 H 1.09002 * 109.47475 * 299.99727 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7415 2.4830 -0.0006 5 8 0.4817 2.5020 -0.6747 6 14 2.9328 3.6147 -0.8786 7 1 3.1134 3.1533 -2.2785 8 1 2.3921 4.9978 -0.8797 9 1 4.2420 3.5950 -0.1780 10 7 3.5851 0.8188 0.0005 11 6 3.9315 -0.4310 0.0005 12 7 5.2384 -0.8927 0.0015 13 6 5.5066 -2.3329 0.0019 14 6 7.0180 -2.5704 0.0036 15 6 7.2980 -4.0745 0.0034 16 14 9.1384 -4.3636 0.0048 17 6 9.8869 -3.5929 1.5269 18 6 9.4794 -6.1951 0.0053 19 6 9.8894 -3.5919 -1.5154 20 16 2.5413 -1.4260 0.0004 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5143 0.8898 23 1 -0.3633 0.5135 -0.8903 24 1 1.6089 2.8217 1.0270 25 1 0.5243 2.2119 -1.5962 26 1 5.9756 -0.2621 0.0019 27 1 5.0673 -2.7841 0.8915 28 1 5.0685 -2.7842 -0.8885 29 1 7.4577 -2.1191 -0.8859 30 1 7.4556 -2.1191 0.8941 31 1 6.8583 -4.5261 0.8926 32 1 6.8604 -4.5253 -0.8874 33 1 9.4474 -4.0444 2.4163 34 1 10.9637 -3.7616 1.5275 35 1 9.6874 -2.5213 1.5270 36 1 9.0414 -6.6464 -0.8850 37 1 10.5561 -6.3643 0.0065 38 1 9.0400 -6.6463 0.8949 39 1 9.6900 -2.5203 -1.5152 40 1 10.9664 -3.7606 -1.5143 41 1 9.4516 -4.0428 -2.4059 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_9703850_15704122.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:46:34 Heat of formation + Delta-G solvation = -46.536286 kcal Electronic energy + Delta-G solvation = -18443.282362 eV Core-core repulsion = 15607.726053 eV Total energy + Delta-G solvation = -2835.556309 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.119 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.95042 -38.36519 -37.21359 -34.22024 -32.36698 -29.70521 -29.27345 -28.51389 -28.50715 -26.74677 -25.42175 -24.00347 -22.81459 -20.45620 -19.06134 -17.92476 -17.24269 -16.91434 -16.40224 -16.17146 -15.74873 -15.20261 -14.64414 -14.52736 -14.34481 -14.29279 -14.02925 -13.97055 -13.78017 -13.57792 -13.49639 -13.38744 -13.25056 -13.19074 -13.17802 -12.84467 -12.60023 -12.27997 -12.04337 -11.95099 -11.71676 -10.96709 -10.91996 -10.88881 -10.71631 -10.52692 -10.28833 -9.91111 -8.55927 0.09565 0.24873 0.84925 1.31111 1.63418 1.67971 1.76361 1.78518 1.78914 1.96676 2.02886 2.25091 2.53515 3.42136 3.59534 3.82642 3.83540 4.08986 4.24851 4.40627 4.41911 4.46875 4.62472 4.63281 4.64944 4.66750 4.67419 4.68436 4.68598 4.75714 4.86695 4.96344 4.96704 5.13123 5.20659 5.35561 5.39912 5.46991 5.47301 5.62523 6.31179 6.51466 7.02421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C -0.240 4.240 3 C 0.064 3.936 4 C -0.046 4.046 5 O -0.534 6.534 6 Si 0.983 3.017 7 H -0.261 1.261 8 H -0.262 1.262 9 H -0.246 1.246 10 N -0.550 5.550 11 C 0.318 3.682 12 N -0.696 5.696 13 C 0.120 3.880 14 C -0.118 4.118 15 C -0.412 4.412 16 Si 1.014 2.986 17 C -0.452 4.452 18 C -0.452 4.452 19 C -0.452 4.452 20 S 0.100 5.900 21 H 0.057 0.943 22 H 0.076 0.924 23 H 0.081 0.919 24 H 0.124 0.876 25 H 0.376 0.624 26 H 0.412 0.588 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.492 -3.324 -0.535 3.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.363 4.363 3 C -0.066 4.066 4 C -0.159 4.159 5 O -0.339 6.339 6 Si 0.805 3.195 7 H -0.185 1.185 8 H -0.187 1.187 9 H -0.170 1.170 10 N -0.277 5.277 11 C -0.053 4.053 12 N -0.338 5.338 13 C -0.004 4.004 14 C -0.156 4.156 15 C -0.497 4.497 16 Si 1.210 2.790 17 C -0.560 4.560 18 C -0.560 4.560 19 C -0.560 4.560 20 S 0.349 5.651 21 H 0.076 0.924 22 H 0.095 0.905 23 H 0.100 0.900 24 H 0.141 0.859 25 H 0.224 0.776 26 H 0.250 0.750 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.135 -3.470 -0.378 4.092 hybrid contribution 0.036 0.374 -0.190 0.421 sum 2.170 -3.096 -0.568 3.824 Atomic orbital electron populations 1.20147 0.86323 1.01606 1.03744 1.25110 1.01299 0.92609 1.17288 1.20125 0.86798 0.97278 1.02426 1.24470 0.92496 0.95270 1.03664 1.86531 1.28943 1.89528 1.28867 0.85135 0.78060 0.76832 0.79479 1.18477 1.18675 1.16955 1.65964 1.17298 1.16774 1.27696 1.23280 0.91911 0.91491 0.98616 1.44049 1.01749 1.07516 1.80436 1.21722 0.97843 0.78697 1.02090 1.21368 0.93703 0.97191 1.03339 1.26148 1.21118 0.97169 1.05291 0.79134 0.65867 0.66974 0.67046 1.26179 1.07154 1.07168 1.15450 1.26143 1.05050 1.20330 1.04441 1.26180 1.07179 1.07173 1.15422 1.83980 0.96562 1.10610 1.73950 0.92421 0.90529 0.90004 0.85857 0.77646 0.75002 0.91426 0.91429 0.90695 0.90674 0.90136 0.90147 0.91270 0.91269 0.91315 0.91258 0.91225 0.91254 0.91314 0.91265 0.91275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.01 8.91 36.01 0.32 0.31 16 2 C -0.24 -0.51 6.50 -36.02 -0.23 -0.74 16 3 C 0.06 0.19 5.92 -84.18 -0.50 -0.31 16 4 C -0.05 -0.06 2.94 36.01 0.11 0.04 16 5 O -0.53 -0.24 10.17 -35.23 -0.36 -0.60 16 6 Si 0.98 1.81 27.37 -169.99 -4.65 -2.84 16 7 H -0.26 -0.73 7.11 56.52 0.40 -0.33 16 8 H -0.26 -0.62 7.11 56.52 0.40 -0.22 16 9 H -0.25 -0.86 7.11 56.52 0.40 -0.46 16 10 N -0.55 -2.19 8.95 -11.36 -0.10 -2.29 16 11 C 0.32 0.81 8.24 -87.68 -0.72 0.08 16 12 N -0.70 -0.11 5.71 -62.30 -0.36 -0.47 16 13 C 0.12 -0.21 5.53 -4.05 -0.02 -0.24 16 14 C -0.12 0.38 4.70 -26.73 -0.13 0.26 16 15 C -0.41 1.53 4.45 37.16 0.17 1.69 16 16 Si 1.01 -4.00 12.19 -169.99 -2.07 -6.07 16 17 C -0.45 1.10 8.65 101.05 0.87 1.97 16 18 C -0.45 1.04 8.65 101.05 0.87 1.92 16 19 C -0.45 1.11 8.65 101.05 0.87 1.98 16 20 S 0.10 0.15 22.32 -107.50 -2.40 -2.25 16 21 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 22 H 0.08 0.04 8.14 -51.93 -0.42 -0.38 16 23 H 0.08 -0.06 6.40 -51.93 -0.33 -0.40 16 24 H 0.12 0.07 7.96 -51.93 -0.41 -0.35 16 25 H 0.38 -0.89 8.13 45.56 0.37 -0.51 16 26 H 0.41 -0.28 8.60 -40.82 -0.35 -0.63 16 27 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 28 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 29 H 0.07 -0.27 7.79 -51.92 -0.40 -0.68 16 30 H 0.07 -0.27 7.79 -51.93 -0.40 -0.68 16 31 H 0.08 -0.30 7.96 -51.93 -0.41 -0.72 16 32 H 0.08 -0.30 7.96 -51.93 -0.41 -0.72 16 33 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 34 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 35 H 0.07 -0.17 7.79 -51.93 -0.40 -0.57 16 36 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 37 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 38 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 39 H 0.07 -0.17 7.79 -51.93 -0.40 -0.57 16 40 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 41 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 LS Contribution 347.67 15.07 5.24 5.24 Total: 0.00 -5.30 347.67 -9.64 -14.94 By element: Atomic # 1 Polarization: -6.09 SS G_CDS: -6.55 Total: -12.64 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: 1.61 Total: 6.97 kcal Atomic # 7 Polarization: -2.30 SS G_CDS: -0.46 Total: -2.76 kcal Atomic # 8 Polarization: -0.24 SS G_CDS: -0.36 Total: -0.60 kcal Atomic # 14 Polarization: -2.18 SS G_CDS: -6.72 Total: -8.91 kcal Atomic # 16 Polarization: 0.15 SS G_CDS: -2.40 Total: -2.25 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -5.30 -9.64 -14.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_9703850_15704122.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.592 kcal (2) G-P(sol) polarization free energy of solvation -5.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds