Wall clock time and date at job start Tue Mar 9 2021 13:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33331 * 125.95275 * 2 1 4 4 C 1.50700 * 122.70938 * 359.97438 * 3 2 1 5 5 O 1.42900 * 109.47291 * 329.99664 * 4 3 2 6 6 Si 1.86303 * 109.47087 * 209.99762 * 4 3 2 7 7 H 1.48500 * 109.46986 * 59.99870 * 6 4 3 8 8 H 1.48502 * 109.46933 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47153 * 300.00047 * 6 4 3 10 10 N 1.32115 * 114.58076 * 179.97438 * 3 2 1 11 11 C 1.29694 * 116.86485 * 0.02562 * 10 3 2 12 12 N 1.38609 * 124.94873 * 180.02562 * 11 10 3 13 13 C 1.46493 * 120.00234 * 179.97438 * 12 11 10 14 14 C 1.52998 * 109.47643 * 180.02562 * 13 12 11 15 15 C 1.52996 * 109.47588 * 180.02562 * 14 13 12 16 16 Si 1.86294 * 109.47300 * 179.97438 * 15 14 13 17 17 C 1.86308 * 109.47134 * 60.00529 * 16 15 14 18 18 C 1.86302 * 109.47363 * 179.97438 * 16 15 14 19 19 C 1.86291 * 109.47507 * 300.00233 * 16 15 14 20 20 S 1.70958 * 110.10068 * 359.97438 * 11 10 3 21 21 H 1.08991 * 109.47007 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.46856 * 300.03082 * 1 2 3 23 23 H 1.09003 * 109.46759 * 60.02612 * 1 2 3 24 24 H 1.09001 * 109.47000 * 89.99918 * 4 3 2 25 25 H 0.96698 * 113.99858 * 300.00706 * 5 4 3 26 26 H 0.97008 * 120.00299 * 359.97438 * 12 11 10 27 27 H 1.08998 * 109.47449 * 300.00154 * 13 12 11 28 28 H 1.09007 * 109.46794 * 60.00111 * 13 12 11 29 29 H 1.09012 * 109.46968 * 300.00397 * 14 13 12 30 30 H 1.08999 * 109.47209 * 59.99841 * 14 13 12 31 31 H 1.08998 * 109.47449 * 299.99974 * 15 14 13 32 32 H 1.09007 * 109.46849 * 59.99965 * 15 14 13 33 33 H 1.09001 * 109.46984 * 59.99236 * 17 16 15 34 34 H 1.08992 * 109.47378 * 180.02562 * 17 16 15 35 35 H 1.09005 * 109.46260 * 299.99845 * 17 16 15 36 36 H 1.08999 * 109.46944 * 59.99996 * 18 16 15 37 37 H 1.08996 * 109.47461 * 180.02562 * 18 16 15 38 38 H 1.09003 * 109.47409 * 300.00810 * 18 16 15 39 39 H 1.08997 * 109.47532 * 59.99852 * 19 16 15 40 40 H 1.09005 * 109.47517 * 179.97438 * 19 16 15 41 41 H 1.09002 * 109.47475 * 299.99727 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7415 2.4830 -0.0006 5 8 0.4817 2.5020 -0.6747 6 14 2.9328 3.6147 -0.8786 7 1 3.1134 3.1533 -2.2785 8 1 2.3921 4.9978 -0.8797 9 1 4.2420 3.5950 -0.1780 10 7 3.5851 0.8188 0.0005 11 6 3.9315 -0.4310 0.0005 12 7 5.2384 -0.8927 0.0015 13 6 5.5066 -2.3329 0.0019 14 6 7.0180 -2.5704 0.0036 15 6 7.2980 -4.0745 0.0034 16 14 9.1384 -4.3636 0.0048 17 6 9.8869 -3.5929 1.5269 18 6 9.4794 -6.1951 0.0053 19 6 9.8894 -3.5919 -1.5154 20 16 2.5413 -1.4260 0.0004 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5143 0.8898 23 1 -0.3633 0.5135 -0.8903 24 1 1.6089 2.8217 1.0270 25 1 0.5243 2.2119 -1.5962 26 1 5.9756 -0.2621 0.0019 27 1 5.0673 -2.7841 0.8915 28 1 5.0685 -2.7842 -0.8885 29 1 7.4577 -2.1191 -0.8859 30 1 7.4556 -2.1191 0.8941 31 1 6.8583 -4.5261 0.8926 32 1 6.8604 -4.5253 -0.8874 33 1 9.4474 -4.0444 2.4163 34 1 10.9637 -3.7616 1.5275 35 1 9.6874 -2.5213 1.5270 36 1 9.0414 -6.6464 -0.8850 37 1 10.5561 -6.3643 0.0065 38 1 9.0400 -6.6463 0.8949 39 1 9.6900 -2.5203 -1.5152 40 1 10.9664 -3.7606 -1.5143 41 1 9.4516 -4.0428 -2.4059 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_9703850_15704122.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:46:33 Heat of formation + Delta-G solvation = -39.007370 kcal Electronic energy + Delta-G solvation = -18442.955884 eV Core-core repulsion = 15607.726053 eV Total energy + Delta-G solvation = -2835.229831 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.119 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.05893 -38.34662 -37.19755 -34.11616 -32.36821 -29.58146 -29.23635 -28.30504 -28.29353 -26.64108 -25.47727 -24.05996 -22.61795 -20.50081 -19.14281 -17.98435 -17.28745 -16.86158 -16.35554 -16.13800 -15.86897 -15.20944 -14.78460 -14.33676 -14.21650 -14.07243 -13.87383 -13.82748 -13.78401 -13.49190 -13.41195 -13.27743 -13.07121 -13.00376 -12.97784 -12.77079 -12.51406 -12.36419 -12.22377 -11.88528 -11.74750 -10.97267 -10.70858 -10.66716 -10.65452 -10.45619 -10.39120 -10.01398 -8.62357 -0.01983 0.15588 0.74207 1.18290 1.48784 1.60298 1.80801 1.86071 2.02670 2.04955 2.08556 2.11815 2.76133 3.40820 3.55528 4.01540 4.06281 4.19288 4.33903 4.36853 4.58945 4.65931 4.66355 4.81654 4.82434 4.85944 4.86711 4.87416 4.87845 4.88256 4.90573 5.02004 5.11919 5.24183 5.35522 5.48187 5.59101 5.65001 5.67954 5.68568 6.31085 6.60473 6.93536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.249 4.249 3 C 0.048 3.952 4 C -0.037 4.037 5 O -0.537 6.537 6 Si 1.015 2.985 7 H -0.275 1.275 8 H -0.269 1.269 9 H -0.273 1.273 10 N -0.579 5.579 11 C 0.305 3.695 12 N -0.692 5.692 13 C 0.118 3.882 14 C -0.119 4.119 15 C -0.416 4.416 16 Si 1.088 2.912 17 C -0.470 4.470 18 C -0.471 4.471 19 C -0.470 4.470 20 S 0.117 5.883 21 H 0.064 0.936 22 H 0.074 0.926 23 H 0.092 0.908 24 H 0.130 0.870 25 H 0.388 0.612 26 H 0.414 0.586 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.899 -3.806 -0.582 3.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.372 4.372 3 C -0.082 4.082 4 C -0.151 4.151 5 O -0.343 6.343 6 Si 0.840 3.160 7 H -0.200 1.200 8 H -0.193 1.193 9 H -0.198 1.198 10 N -0.307 5.307 11 C -0.067 4.067 12 N -0.333 5.333 13 C -0.005 4.005 14 C -0.156 4.156 15 C -0.501 4.501 16 Si 1.279 2.721 17 C -0.575 4.575 18 C -0.577 4.577 19 C -0.575 4.575 20 S 0.366 5.634 21 H 0.083 0.917 22 H 0.092 0.908 23 H 0.111 0.889 24 H 0.148 0.852 25 H 0.238 0.762 26 H 0.253 0.747 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.560 -3.966 -0.436 4.284 hybrid contribution 0.278 0.488 -0.192 0.593 sum 1.838 -3.478 -0.629 3.983 Atomic orbital electron populations 1.20193 0.85143 1.02177 1.04121 1.25393 1.02202 0.92690 1.16891 1.20347 0.86756 0.98090 1.02975 1.24352 0.92436 0.94360 1.03955 1.86506 1.28328 1.89537 1.29911 0.84685 0.76729 0.76406 0.78158 1.20006 1.19348 1.19801 1.65986 1.18057 1.17707 1.28954 1.23577 0.92989 0.91576 0.98533 1.44245 1.01111 1.08385 1.79588 1.21869 0.98917 0.77567 1.02189 1.21406 0.92662 0.97633 1.03933 1.26210 1.21311 0.96821 1.05804 0.77988 0.64809 0.64570 0.64729 1.26407 1.07008 1.07524 1.16611 1.26386 1.04705 1.22214 1.04386 1.26404 1.07032 1.07532 1.16568 1.83830 0.95829 1.10027 1.73733 0.91748 0.90762 0.88926 0.85204 0.76248 0.74733 0.91319 0.91249 0.90137 0.90155 0.89674 0.89651 0.91383 0.91882 0.91230 0.91304 0.91801 0.91315 0.91222 0.91879 0.91366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.01 8.91 71.24 0.63 0.64 16 2 C -0.25 -1.01 6.50 24.58 0.16 -0.85 16 3 C 0.05 0.30 5.92 41.41 0.25 0.54 16 4 C -0.04 -0.10 2.94 71.24 0.21 0.11 16 5 O -0.54 -0.20 10.17 -148.98 -1.52 -1.71 16 6 Si 1.01 4.57 27.37 68.60 1.88 6.45 16 7 H -0.28 -1.80 7.11 99.48 0.71 -1.09 16 8 H -0.27 -1.39 7.11 99.48 0.71 -0.68 16 9 H -0.27 -2.38 7.11 99.48 0.71 -1.68 16 10 N -0.58 -4.99 8.95 -189.86 -1.70 -6.69 16 11 C 0.30 1.64 8.24 179.32 1.48 3.12 16 12 N -0.69 -0.32 5.71 -351.02 -2.01 -2.32 16 13 C 0.12 -0.47 5.53 86.38 0.48 0.01 16 14 C -0.12 0.85 4.70 30.59 0.14 1.00 16 15 C -0.42 3.48 4.45 71.98 0.32 3.80 16 16 Si 1.09 -8.97 12.19 68.60 0.84 -8.13 16 17 C -0.47 2.29 8.65 113.37 0.98 3.27 16 18 C -0.47 2.16 8.65 113.37 0.98 3.14 16 19 C -0.47 2.32 8.65 113.37 0.98 3.30 16 20 S 0.12 0.33 22.32 -56.49 -1.26 -0.93 16 21 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 22 H 0.07 0.04 8.14 -2.38 -0.02 0.02 16 23 H 0.09 -0.23 6.40 -2.39 -0.02 -0.25 16 24 H 0.13 0.14 7.96 -2.39 -0.02 0.13 16 25 H 0.39 -2.05 8.13 -74.06 -0.60 -2.65 16 26 H 0.41 -0.42 8.60 -92.70 -0.80 -1.22 16 27 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 28 H 0.07 -0.29 8.14 -2.38 -0.02 -0.31 16 29 H 0.08 -0.65 7.79 -2.38 -0.02 -0.67 16 30 H 0.08 -0.64 7.79 -2.39 -0.02 -0.66 16 31 H 0.08 -0.74 7.96 -2.39 -0.02 -0.76 16 32 H 0.08 -0.75 7.96 -2.38 -0.02 -0.77 16 33 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 34 H 0.06 -0.22 7.96 -2.39 -0.02 -0.24 16 35 H 0.07 -0.35 7.79 -2.38 -0.02 -0.36 16 36 H 0.07 -0.31 7.96 -2.39 -0.02 -0.32 16 37 H 0.06 -0.22 7.96 -2.39 -0.02 -0.23 16 38 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 39 H 0.07 -0.35 7.79 -2.39 -0.02 -0.37 16 40 H 0.06 -0.23 7.96 -2.38 -0.02 -0.25 16 41 H 0.07 -0.32 7.96 -2.39 -0.02 -0.33 16 Total: 0.00 -12.23 347.67 3.21 -9.02 By element: Atomic # 1 Polarization: -14.12 SS G_CDS: 0.36 Total: -13.76 kcal Atomic # 6 Polarization: 11.47 SS G_CDS: 6.61 Total: 18.08 kcal Atomic # 7 Polarization: -5.31 SS G_CDS: -3.70 Total: -9.01 kcal Atomic # 8 Polarization: -0.20 SS G_CDS: -1.52 Total: -1.71 kcal Atomic # 14 Polarization: -4.39 SS G_CDS: 2.71 Total: -1.68 kcal Atomic # 16 Polarization: 0.33 SS G_CDS: -1.26 Total: -0.93 kcal Total: -12.23 3.21 -9.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_9703850_15704122.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.991 kcal (2) G-P(sol) polarization free energy of solvation -12.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds