Wall clock time and date at job start Tue Mar 9 2021 13:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86301 * 109.47008 * 2 1 4 4 C 1.86303 * 109.47166 * 240.00237 * 2 1 3 5 5 C 1.86299 * 109.47482 * 120.00248 * 2 1 3 6 6 C 1.53001 * 109.47090 * 59.99499 * 5 2 1 7 7 C 1.53000 * 109.46886 * 180.02562 * 6 5 2 8 8 N 1.46499 * 109.46840 * 180.02562 * 7 6 5 9 9 C 1.39149 * 119.99974 * 179.97438 * 8 7 6 10 10 C 1.39302 * 119.71938 * 179.97438 * 9 8 7 11 11 F 1.35099 * 120.46725 * 0.02562 * 10 9 8 12 12 C 1.38485 * 119.06119 * 179.97438 * 10 9 8 13 13 C 1.38859 * 118.48232 * 0.02562 * 12 10 9 14 14 C 1.50702 * 120.32738 * 179.97438 * 13 12 10 15 15 O 1.42903 * 109.47088 * 300.00020 * 14 13 12 16 16 Si 1.86295 * 109.47401 * 179.97438 * 14 13 12 17 17 H 1.48505 * 109.47260 * 60.00058 * 16 14 13 18 18 H 1.48497 * 109.47464 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47323 * 300.00415 * 16 14 13 20 20 C 1.38025 * 119.34911 * 359.97438 * 13 12 10 21 21 N 1.31984 * 120.89422 * 359.74492 * 20 13 12 22 22 H 1.09001 * 109.47083 * 299.99634 * 1 2 3 23 23 H 1.08996 * 109.47484 * 60.00133 * 1 2 3 24 24 H 1.09000 * 109.46936 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47148 * 180.02562 * 3 2 1 26 26 H 1.09001 * 109.47439 * 299.99772 * 3 2 1 27 27 H 1.09001 * 109.46900 * 60.00253 * 3 2 1 28 28 H 1.09004 * 109.46812 * 300.00218 * 4 2 1 29 29 H 1.09004 * 109.47066 * 59.99752 * 4 2 1 30 30 H 1.08992 * 109.47172 * 179.97438 * 4 2 1 31 31 H 1.09001 * 109.46605 * 299.99851 * 5 2 1 32 32 H 1.09002 * 109.47329 * 180.02562 * 5 2 1 33 33 H 1.09001 * 109.46652 * 60.00386 * 6 5 2 34 34 H 1.08992 * 109.47514 * 300.00475 * 6 5 2 35 35 H 1.09002 * 109.47398 * 300.00496 * 7 6 5 36 36 H 1.09001 * 109.47194 * 60.00677 * 7 6 5 37 37 H 0.97000 * 120.00420 * 0.02562 * 8 7 6 38 38 H 1.08002 * 120.76026 * 179.97438 * 12 10 9 39 39 H 1.09004 * 109.47141 * 60.00161 * 14 13 12 40 40 H 0.96698 * 114.00062 * 300.00092 * 15 14 13 41 41 H 1.08000 * 119.55792 * 179.97438 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4841 -0.8783 1.5211 6 6 1.9740 -2.3207 1.5211 7 6 2.4836 -3.0418 2.7706 8 7 1.9957 -4.4232 2.7703 9 6 2.3321 -5.2800 3.8138 10 6 1.8645 -6.5922 3.8079 11 9 1.0878 -7.0381 2.7964 12 6 2.2080 -7.4334 4.8530 13 6 3.0086 -6.9322 5.8707 14 6 3.4070 -7.8111 7.0283 15 8 2.2345 -8.2636 7.7084 16 14 4.4736 -6.8399 8.2072 17 1 3.7127 -5.6693 8.7134 18 1 4.8667 -7.7060 9.3475 19 1 5.6919 -6.3700 7.5002 20 6 3.4361 -5.6212 5.8118 21 7 3.0980 -4.8430 4.8008 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 3.5740 1.7565 -0.0005 26 1 2.1207 2.2703 -0.8900 27 1 2.1206 2.2703 0.8900 28 1 2.1206 -1.9058 -1.5212 29 1 2.1206 -0.3643 -2.4112 30 1 3.5739 -0.8778 -1.5214 31 1 2.1208 -0.3644 2.4110 32 1 3.5741 -0.8779 1.5213 33 1 2.3374 -2.8345 0.6310 34 1 0.8841 -2.3208 1.5211 35 1 3.5736 -3.0418 2.7710 36 1 2.1199 -2.5279 3.6604 37 1 1.4389 -4.7408 2.0423 38 1 1.8603 -8.4557 4.8763 39 1 3.9659 -8.6701 6.6568 40 1 1.6877 -7.5509 8.0663 41 1 4.0586 -5.2277 6.6018 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_9703850_17656566.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:48:13 Heat of formation + Delta-G solvation = -94.476914 kcal Electronic energy + Delta-G solvation = -20151.891114 eV Core-core repulsion = 16911.187340 eV Total energy + Delta-G solvation = -3240.703774 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.138 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.82675 -41.35400 -38.36580 -37.22909 -34.33110 -33.10117 -31.28136 -29.56820 -28.47196 -28.46657 -27.40787 -25.95635 -24.43506 -22.83088 -22.42503 -19.31226 -18.45768 -18.27953 -17.63096 -17.04318 -16.40154 -16.16643 -15.99260 -15.90361 -15.69517 -14.76770 -14.71998 -14.37163 -14.24376 -14.09819 -14.07114 -13.94295 -13.60392 -13.56286 -13.35767 -13.21191 -13.13714 -13.01735 -12.67792 -12.58448 -12.19887 -12.03681 -12.00684 -11.23761 -10.87369 -10.84021 -10.66825 -10.65052 -10.54349 -10.43785 -8.71459 -0.03722 0.16818 1.09620 1.39764 1.45871 1.71367 1.82180 1.83720 1.87570 2.06961 2.58985 2.59899 3.08612 3.30260 3.41955 3.61019 3.85406 4.00208 4.02503 4.08901 4.23972 4.47370 4.53980 4.63445 4.64576 4.68107 4.70356 4.71659 4.72443 4.72466 4.73001 4.76766 4.94364 5.00536 5.12659 5.29461 5.40381 5.46092 5.51101 5.51162 5.98375 6.20886 6.50200 7.00006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.452 4.452 2 Si 1.012 2.988 3 C -0.452 4.452 4 C -0.452 4.452 5 C -0.409 4.409 6 C -0.123 4.123 7 C 0.132 3.868 8 N -0.719 5.719 9 C 0.389 3.611 10 C -0.022 4.022 11 F -0.134 7.134 12 C -0.035 4.035 13 C -0.212 4.212 14 C -0.067 4.067 15 O -0.539 6.539 16 Si 0.943 3.057 17 H -0.248 1.248 18 H -0.250 1.250 19 H -0.247 1.247 20 C 0.140 3.860 21 N -0.513 5.513 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.412 0.588 38 H 0.151 0.849 39 H 0.120 0.880 40 H 0.377 0.623 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.365 1.744 -0.224 1.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.559 4.559 2 Si 1.208 2.792 3 C -0.559 4.559 4 C -0.559 4.559 5 C -0.495 4.495 6 C -0.161 4.161 7 C 0.008 3.992 8 N -0.352 5.352 9 C 0.150 3.850 10 C -0.048 4.048 11 F -0.113 7.113 12 C -0.061 4.061 13 C -0.218 4.218 14 C -0.178 4.178 15 O -0.344 6.344 16 Si 0.765 3.235 17 H -0.171 1.171 18 H -0.173 1.173 19 H -0.171 1.171 20 C -0.017 4.017 21 N -0.230 5.230 22 H 0.087 0.913 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.249 0.751 38 H 0.169 0.831 39 H 0.137 0.863 40 H 0.224 0.776 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 1.468 2.687 0.123 3.064 hybrid contribution -1.113 -0.763 -0.682 1.512 sum 0.355 1.924 -0.560 2.035 Atomic orbital electron populations 1.26171 1.20961 1.04339 1.04398 0.79172 0.66924 0.66730 0.66417 1.26141 1.06261 1.19097 1.04423 1.26172 1.06241 1.08003 1.15457 1.26120 1.06131 1.01171 1.16059 1.21432 1.01322 0.95766 0.97573 1.21471 0.99334 0.79757 0.98601 1.44674 1.56094 1.11509 1.22935 1.18459 0.90995 0.86470 0.89027 1.18010 1.02662 0.93264 0.90888 1.91488 1.72677 1.89376 1.57724 1.21261 0.94225 1.00257 0.90359 1.20894 1.04717 0.96305 0.99860 1.24780 0.94047 1.03468 0.95531 1.86521 1.36787 1.36717 1.74369 0.85783 0.79375 0.79054 0.79276 1.17140 1.17328 1.17075 1.22358 0.95355 0.89488 0.94497 1.67310 1.15916 1.37180 1.02557 0.91296 0.91324 0.91338 0.91273 0.91281 0.91270 0.91335 0.91324 0.91297 0.90270 0.90263 0.91132 0.91137 0.91518 0.91528 0.75099 0.83102 0.86264 0.77584 0.82678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.85 8.65 101.05 0.87 1.73 16 2 Si 1.01 -3.28 12.19 -169.99 -2.07 -5.36 16 3 C -0.45 0.78 8.65 101.05 0.87 1.65 16 4 C -0.45 0.85 8.65 101.05 0.87 1.72 16 5 C -0.41 1.06 4.45 37.16 0.17 1.23 16 6 C -0.12 0.26 4.70 -26.73 -0.13 0.14 16 7 C 0.13 -0.02 5.70 -4.04 -0.02 -0.05 16 8 N -0.72 -0.49 5.71 -60.34 -0.34 -0.83 16 9 C 0.39 0.92 7.49 -154.85 -1.16 -0.24 16 10 C -0.02 -0.05 7.35 -39.09 -0.29 -0.33 16 11 F -0.13 -0.34 16.65 2.25 0.04 -0.30 16 12 C -0.03 -0.03 9.75 -39.26 -0.38 -0.41 16 13 C -0.21 -0.04 5.40 -104.47 -0.56 -0.60 16 14 C -0.07 0.08 2.83 36.01 0.10 0.18 16 15 O -0.54 0.23 12.78 -35.23 -0.45 -0.22 16 16 Si 0.94 -1.36 25.10 -169.99 -4.27 -5.62 16 17 H -0.25 0.32 7.11 56.52 0.40 0.72 16 18 H -0.25 -0.02 7.11 56.52 0.40 0.38 16 19 H -0.25 0.23 7.11 56.52 0.40 0.63 16 20 C 0.14 0.14 9.84 -17.56 -0.17 -0.03 16 21 N -0.51 -1.38 9.57 -12.36 -0.12 -1.50 16 22 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 23 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 24 H 0.07 -0.13 7.79 -51.93 -0.40 -0.53 16 25 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 26 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 27 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 28 H 0.07 -0.13 7.79 -51.93 -0.40 -0.53 16 29 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 30 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 31 H 0.08 -0.20 7.96 -51.93 -0.41 -0.61 16 32 H 0.08 -0.20 7.96 -51.93 -0.41 -0.61 16 33 H 0.07 -0.18 7.79 -51.93 -0.40 -0.59 16 34 H 0.07 -0.18 7.79 -51.93 -0.40 -0.59 16 35 H 0.07 0.04 8.14 -51.93 -0.42 -0.38 16 36 H 0.07 0.04 8.14 -51.93 -0.42 -0.38 16 37 H 0.41 -0.27 7.94 -40.82 -0.32 -0.60 16 38 H 0.15 -0.04 8.06 -52.49 -0.42 -0.46 16 39 H 0.12 -0.25 7.96 -51.93 -0.41 -0.66 16 40 H 0.38 -1.32 8.70 45.56 0.40 -0.92 16 41 H 0.16 -0.12 4.88 -52.49 -0.26 -0.38 16 LS Contribution 343.44 15.07 5.18 5.18 Total: 0.00 -4.98 343.44 -7.87 -12.85 By element: Atomic # 1 Polarization: -3.17 SS G_CDS: -6.00 Total: -9.17 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: 0.18 Total: 4.98 kcal Atomic # 7 Polarization: -1.87 SS G_CDS: -0.46 Total: -2.33 kcal Atomic # 8 Polarization: 0.23 SS G_CDS: -0.45 Total: -0.22 kcal Atomic # 9 Polarization: -0.34 SS G_CDS: 0.04 Total: -0.30 kcal Atomic # 14 Polarization: -4.64 SS G_CDS: -6.34 Total: -10.98 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -4.98 -7.87 -12.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_9703850_17656566.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.628 kcal (2) G-P(sol) polarization free energy of solvation -4.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds