Wall clock time and date at job start Tue Mar 9 2021 13:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86300 * 109.47509 * 2 1 4 4 C 1.50702 * 109.47007 * 239.99614 * 2 1 3 5 5 C 1.38612 * 120.71489 * 119.72594 * 4 2 1 6 6 N 1.32276 * 119.19330 * 179.78988 * 5 4 2 7 7 C 1.32501 * 120.74251 * 0.47036 * 6 5 4 8 8 N 1.38397 * 119.21770 * 179.75844 * 7 6 5 9 9 C 1.46499 * 120.00333 * 0.02562 * 8 7 6 10 10 H 1.09001 * 112.85170 * 336.20212 * 9 8 7 11 11 C 1.53792 * 113.61292 * 107.50432 * 9 8 7 12 12 C 1.53780 * 87.07762 * 89.11780 * 11 9 8 13 13 H 1.08998 * 113.61604 * 270.88482 * 12 11 9 14 14 C 1.50701 * 113.68915 * 139.99090 * 12 11 9 15 15 C 1.38232 * 119.99980 * 322.19584 * 14 12 11 16 16 C 1.38238 * 120.00251 * 179.80985 * 15 14 12 17 17 C 1.38242 * 119.99469 * 0.41484 * 16 15 14 18 18 C 1.50704 * 119.99701 * 179.79612 * 17 16 15 19 19 F 1.39902 * 109.46841 * 270.01679 * 18 17 16 20 20 F 1.39903 * 109.47375 * 30.01820 * 18 17 16 21 21 F 1.39897 * 109.47249 * 150.02273 * 18 17 16 22 22 C 1.38237 * 120.00124 * 359.81449 * 17 16 15 23 23 C 1.38233 * 120.00013 * 142.45975 * 14 12 11 24 24 C 1.53779 * 113.61700 * 205.00117 * 9 8 7 25 25 N 1.32498 * 121.56087 * 359.77947 * 7 6 5 26 26 C 1.32277 * 120.74314 * 359.97438 * 25 7 6 27 27 H 0.96695 * 113.99582 * 299.99951 * 1 2 3 28 28 H 1.09004 * 109.46926 * 120.00048 * 2 1 3 29 29 H 1.48495 * 109.99824 * 300.00080 * 3 2 1 30 30 H 1.48498 * 109.99663 * 61.31719 * 3 2 1 31 31 H 1.07992 * 120.40378 * 359.97438 * 5 4 2 32 32 H 0.97002 * 119.99884 * 180.02562 * 8 7 6 33 33 H 1.08997 * 113.61348 * 203.66806 * 11 9 8 34 34 H 1.09000 * 113.61001 * 334.57217 * 11 9 8 35 35 H 1.08008 * 120.00104 * 359.97438 * 15 14 12 36 36 H 1.07992 * 120.00492 * 180.21018 * 16 15 14 37 37 H 1.07999 * 120.00005 * 179.97438 * 22 17 16 38 38 H 1.08002 * 120.00134 * 359.97438 * 23 14 12 39 39 H 1.08998 * 113.61591 * 25.43431 * 24 9 8 40 40 H 1.09006 * 113.61421 * 156.33861 * 24 9 8 41 41 H 1.08000 * 120.40064 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 2.7244 -0.0496 -2.1554 6 7 3.1522 -0.7036 -3.2227 7 6 2.8230 -1.9723 -3.4167 8 7 3.2840 -2.6245 -4.5470 9 6 4.1260 -1.9125 -5.5115 10 1 3.9898 -0.8317 -5.4754 11 6 5.5999 -2.3508 -5.4840 12 6 5.2199 -3.4186 -6.5234 13 1 4.8925 -4.3601 -6.0824 14 6 6.2534 -3.6066 -7.6039 15 6 6.9359 -2.5140 -8.1052 16 6 7.8867 -2.6869 -9.0936 17 6 8.1490 -3.9515 -9.5867 18 6 9.1823 -4.1394 -10.6675 19 9 8.5707 -4.0319 -11.9211 20 9 10.1699 -3.1562 -10.5446 21 9 9.7655 -5.4047 -10.5402 22 6 7.4631 -5.0435 -9.0887 23 6 6.5151 -4.8710 -8.0976 24 6 4.0612 -2.4945 -6.9334 25 7 2.0626 -2.6311 -2.5546 26 6 1.6057 -2.0372 -1.4646 27 1 -0.3932 0.4417 0.7650 28 1 1.7923 -0.5139 0.8900 29 1 1.5617 2.4678 -1.2085 30 1 1.5880 2.4585 1.2242 31 1 2.9923 0.9857 -2.0050 32 1 3.0496 -3.5532 -4.7005 33 1 6.2871 -1.5955 -5.8652 34 1 5.9141 -2.7659 -4.5264 35 1 6.7281 -1.5255 -7.7228 36 1 8.4223 -1.8338 -9.4829 37 1 7.6677 -6.0314 -9.4742 38 1 5.9792 -5.7242 -7.7086 39 1 3.1334 -3.0256 -7.1460 40 1 4.3279 -1.7785 -7.7109 41 1 0.9859 -2.5794 -0.7657 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_9705040_12175864.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:48:21 Heat of formation + Delta-G solvation = -56.455047 kcal Electronic energy + Delta-G solvation = -29309.743821 eV Core-core repulsion = 24549.893338 eV Total energy + Delta-G solvation = -4759.850483 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 352.114 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -51.22570 -48.75017 -48.70148 -42.14588 -41.24904 -39.45293 -38.01241 -35.68102 -34.73027 -33.17173 -32.15192 -31.75485 -27.97113 -26.73164 -26.50579 -25.92961 -24.83907 -23.99373 -23.10950 -22.36656 -20.31573 -19.64694 -19.55007 -19.46601 -19.37541 -18.65505 -18.23049 -17.22068 -16.61821 -16.50099 -16.27228 -16.02504 -15.91952 -15.67127 -15.54434 -15.44043 -15.35306 -15.16052 -14.95158 -14.86587 -14.77933 -14.61231 -14.46617 -14.28163 -14.06909 -13.94073 -13.54865 -13.34630 -13.26771 -12.75719 -12.40047 -12.28972 -12.02107 -11.88940 -11.86606 -11.67783 -11.24141 -11.13739 -10.61257 -10.05840 -10.03626 -9.93605 -9.08186 -4.91097 -0.12611 0.04939 0.13808 0.27969 1.32069 1.61980 1.62519 1.79215 1.98007 2.41800 2.69378 2.75192 2.97390 3.13407 3.36112 3.39588 3.47773 3.61397 3.66354 3.70589 3.77037 3.84532 3.89234 3.90730 3.98778 4.20154 4.21738 4.32070 4.40325 4.57460 4.66257 4.68466 4.76684 4.80407 4.84995 4.91465 5.03464 5.06710 5.12414 5.19570 5.20617 5.36361 5.55408 5.77885 5.80602 6.05471 6.39579 6.63875 7.26873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.060 4.060 3 Si 0.755 3.245 4 C -0.248 4.248 5 C 0.193 3.807 6 N -0.573 5.573 7 C 0.553 3.447 8 N -0.674 5.674 9 C 0.134 3.866 10 H 0.102 0.898 11 C -0.138 4.138 12 C -0.073 4.073 13 H 0.108 0.892 14 C -0.037 4.037 15 C -0.118 4.118 16 C -0.076 4.076 17 C -0.203 4.203 18 C 0.506 3.494 19 F -0.184 7.184 20 F -0.182 7.182 21 F -0.183 7.183 22 C -0.078 4.078 23 C -0.121 4.121 24 C -0.127 4.127 25 N -0.590 5.590 26 C 0.212 3.788 27 H 0.397 0.603 28 H 0.103 0.897 29 H -0.297 1.297 30 H -0.283 1.283 31 H 0.186 0.814 32 H 0.418 0.582 33 H 0.107 0.893 34 H 0.065 0.935 35 H 0.156 0.844 36 H 0.144 0.856 37 H 0.141 0.859 38 H 0.151 0.849 39 H 0.080 0.920 40 H 0.109 0.891 41 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.430 1.519 4.764 5.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.170 4.170 3 Si 0.660 3.340 4 C -0.256 4.256 5 C 0.026 3.974 6 N -0.295 5.295 7 C 0.197 3.803 8 N -0.310 5.310 9 C 0.028 3.972 10 H 0.121 0.879 11 C -0.176 4.176 12 C -0.091 4.091 13 H 0.126 0.874 14 C -0.037 4.037 15 C -0.136 4.136 16 C -0.094 4.094 17 C -0.205 4.205 18 C 0.452 3.548 19 F -0.166 7.166 20 F -0.163 7.163 21 F -0.164 7.164 22 C -0.096 4.096 23 C -0.139 4.139 24 C -0.165 4.165 25 N -0.312 5.312 26 C 0.044 3.956 27 H 0.248 0.752 28 H 0.121 0.879 29 H -0.224 1.224 30 H -0.209 1.209 31 H 0.202 0.798 32 H 0.257 0.743 33 H 0.125 0.875 34 H 0.084 0.916 35 H 0.174 0.826 36 H 0.161 0.839 37 H 0.159 0.841 38 H 0.169 0.831 39 H 0.099 0.901 40 H 0.128 0.872 41 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -0.057 1.634 3.205 3.598 hybrid contribution -1.265 -0.270 0.776 1.509 sum -1.322 1.364 3.982 4.412 Atomic orbital electron populations 1.86535 1.18547 1.80635 1.51283 1.24585 0.83913 1.11137 0.97340 0.94411 0.90241 0.72426 0.76960 1.20834 1.06508 0.97256 1.01033 1.23124 0.88674 0.99538 0.86096 1.67957 1.28991 1.08508 1.24075 1.19613 0.87174 0.85987 0.87569 1.43867 1.53413 1.14520 1.19176 1.21878 0.89995 0.97530 0.87835 0.87949 1.23586 0.96718 0.98449 0.98893 1.21692 0.94071 0.99461 0.93907 0.87366 1.20133 0.95231 0.93034 0.95339 1.21263 0.95588 1.00375 0.96346 1.21147 0.96970 0.95535 0.95729 1.20035 1.01770 0.97673 1.00974 1.18523 0.80989 0.73503 0.81760 1.93218 1.82943 1.95746 1.44655 1.93184 1.64473 1.62688 1.95961 1.93181 1.85738 1.41574 1.95921 1.21131 0.94465 0.98197 0.95785 1.21324 0.97783 0.98193 0.96587 1.23437 0.98405 0.98876 0.95830 1.67986 1.16827 1.40074 1.06302 1.23126 0.90142 0.91388 0.90897 0.75203 0.87940 1.22438 1.20940 0.79760 0.74305 0.87459 0.91603 0.82636 0.83859 0.84143 0.83122 0.90117 0.87242 0.80028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.49 12.76 -148.98 -1.90 -1.41 16 2 C -0.06 0.22 2.84 71.24 0.20 0.42 16 3 Si 0.75 -3.56 29.87 68.60 2.05 -1.51 16 4 C -0.25 -0.21 5.43 -19.69 -0.11 -0.31 16 5 C 0.19 0.26 9.92 84.72 0.84 1.10 16 6 N -0.57 -2.59 9.13 -197.99 -1.81 -4.40 16 7 C 0.55 2.72 8.43 261.49 2.20 4.92 16 8 N -0.67 0.24 5.41 -327.92 -1.77 -1.54 16 9 C 0.13 -0.50 4.33 45.52 0.20 -0.31 16 10 H 0.10 -0.15 7.37 -2.39 -0.02 -0.17 16 11 C -0.14 0.76 7.26 31.12 0.23 0.99 16 12 C -0.07 0.49 3.85 -11.01 -0.04 0.45 16 13 H 0.11 -0.83 8.09 -2.39 -0.02 -0.85 16 14 C -0.04 0.16 5.29 -19.87 -0.11 0.05 16 15 C -0.12 0.48 8.60 22.27 0.19 0.67 16 16 C -0.08 0.08 9.40 22.27 0.21 0.29 16 17 C -0.20 -0.35 5.45 -19.86 -0.11 -0.46 16 18 C 0.51 2.23 3.36 71.24 0.24 2.47 16 19 F -0.18 -1.16 17.30 44.97 0.78 -0.38 16 20 F -0.18 -0.97 16.46 44.97 0.74 -0.23 16 21 F -0.18 -1.03 16.46 44.97 0.74 -0.29 16 22 C -0.08 0.03 9.40 22.27 0.21 0.23 16 23 C -0.12 0.38 9.71 22.27 0.22 0.60 16 24 C -0.13 0.87 7.29 31.12 0.23 1.10 16 25 N -0.59 -3.52 10.46 -197.99 -2.07 -5.59 16 26 C 0.21 0.61 10.92 84.71 0.93 1.54 16 27 H 0.40 -3.48 8.74 -74.06 -0.65 -4.13 16 28 H 0.10 -0.85 7.96 -2.38 -0.02 -0.87 16 29 H -0.30 -0.82 7.11 99.48 0.71 -0.11 16 30 H -0.28 0.12 7.11 99.48 0.71 0.83 16 31 H 0.19 -0.73 5.04 -2.91 -0.01 -0.74 16 32 H 0.42 -1.08 8.82 -92.71 -0.82 -1.90 16 33 H 0.11 -0.80 6.33 -2.39 -0.02 -0.81 16 34 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 35 H 0.16 -1.32 6.68 -2.91 -0.02 -1.34 16 36 H 0.14 -0.45 7.60 -2.91 -0.02 -0.47 16 37 H 0.14 -0.30 7.60 -2.91 -0.02 -0.32 16 38 H 0.15 -1.06 8.05 -2.91 -0.02 -1.09 16 39 H 0.08 -0.53 8.14 -2.39 -0.02 -0.54 16 40 H 0.11 -0.88 7.71 -2.38 -0.02 -0.90 16 41 H 0.18 -0.21 8.06 -2.91 -0.02 -0.24 16 Total: 0.00 -17.44 357.92 1.97 -15.46 By element: Atomic # 1 Polarization: -13.56 SS G_CDS: -0.30 Total: -13.87 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: 5.52 Total: 13.76 kcal Atomic # 7 Polarization: -5.87 SS G_CDS: -5.65 Total: -11.53 kcal Atomic # 8 Polarization: 0.49 SS G_CDS: -1.90 Total: -1.41 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 2.26 Total: -0.91 kcal Atomic # 14 Polarization: -3.56 SS G_CDS: 2.05 Total: -1.51 kcal Total: -17.44 1.97 -15.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_9705040_12175864.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.991 kcal (2) G-P(sol) polarization free energy of solvation -17.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds