Wall clock time and date at job start Tue Mar 9 2021 13:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50707 * 109.46442 * 119.99698 * 2 1 3 5 5 C 1.38018 * 120.33118 * 244.71842 * 4 2 1 6 6 N 1.31974 * 120.85660 * 179.73259 * 5 4 2 7 7 C 1.32400 * 121.61583 * 0.58171 * 6 5 4 8 8 N 1.39007 * 119.70598 * 179.70538 * 7 6 5 9 9 C 1.46498 * 120.00216 * 179.97438 * 8 7 6 10 10 H 1.08994 * 112.84874 * 23.80439 * 9 8 7 11 11 C 1.53784 * 113.61413 * 154.99964 * 9 8 7 12 12 C 1.53788 * 87.07934 * 89.11396 * 11 9 8 13 13 H 1.08997 * 113.61805 * 270.79826 * 12 11 9 14 14 C 1.50701 * 113.61326 * 139.98145 * 12 11 9 15 15 C 1.38236 * 119.99696 * 299.72733 * 14 12 11 16 16 C 1.38236 * 119.99592 * 179.74567 * 15 14 12 17 17 C 1.38238 * 120.00083 * 0.54826 * 16 15 14 18 18 C 1.50695 * 119.99641 * 179.72658 * 17 16 15 19 19 F 1.39903 * 109.47297 * 269.97234 * 18 17 16 20 20 F 1.39902 * 109.47603 * 29.97785 * 18 17 16 21 21 F 1.39905 * 109.47077 * 149.98108 * 18 17 16 22 22 C 1.38228 * 119.99964 * 359.70170 * 17 16 15 23 23 C 1.38232 * 120.00313 * 119.99711 * 14 12 11 24 24 C 1.53782 * 87.08147 * 25.43153 * 12 11 9 25 25 C 1.39137 * 120.59411 * 359.68676 * 7 6 5 26 26 C 1.38298 * 119.09192 * 0.02562 * 25 7 6 27 27 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 28 28 H 1.08999 * 109.47293 * 239.99660 * 2 1 3 29 29 H 1.48501 * 109.99918 * 178.67685 * 3 2 1 30 30 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 31 31 H 1.07997 * 119.57506 * 0.03054 * 5 4 2 32 32 H 0.97006 * 119.99427 * 359.97438 * 8 7 6 33 33 H 1.08997 * 113.61522 * 203.66041 * 11 9 8 34 34 H 1.08997 * 113.61308 * 334.48307 * 11 9 8 35 35 H 1.08005 * 120.00485 * 0.02562 * 15 14 12 36 36 H 1.08009 * 119.99811 * 180.27429 * 16 15 14 37 37 H 1.07995 * 120.00378 * 179.97438 * 22 17 16 38 38 H 1.08004 * 119.99667 * 0.02562 * 23 14 12 39 39 H 1.08997 * 113.61464 * 220.01843 * 24 12 11 40 40 H 1.09001 * 113.61173 * 89.11539 * 24 12 11 41 41 H 1.08002 * 120.45606 * 180.02562 * 25 7 6 42 42 H 1.08003 * 120.74497 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7104 1.2306 5 6 2.6431 -0.0213 2.1915 6 7 3.0833 -0.6319 3.2755 7 6 2.8717 -1.9229 3.4793 8 7 3.3585 -2.5271 4.6326 9 6 3.1276 -3.9550 4.8649 10 1 2.9520 -4.5107 3.9438 11 6 4.1719 -4.6058 5.7873 12 6 3.2624 -4.2129 6.9635 13 1 3.4720 -3.2217 7.3654 14 6 3.1685 -5.2702 8.0333 15 6 2.6779 -6.5249 7.7238 16 6 2.5967 -7.4963 8.7040 17 6 2.9955 -7.2095 9.9961 18 6 2.9011 -8.2666 11.0659 19 9 1.6492 -8.1924 11.6859 20 9 3.0611 -9.5306 10.4880 21 9 3.9055 -8.0583 12.0173 22 6 3.4812 -5.9532 10.3067 23 6 3.5678 -4.9836 9.3253 24 6 2.0925 -4.2405 5.9658 25 6 2.1661 -2.6802 2.5495 26 6 1.6875 -2.0663 1.4064 27 1 -0.3934 0.4418 0.7650 28 1 1.7924 -0.5139 -0.8899 29 1 3.5346 1.7702 0.0322 30 1 1.5616 2.4678 -1.2086 31 1 2.8385 1.0323 2.0568 32 1 3.8511 -2.0032 5.2836 33 1 4.2659 -5.6829 5.6489 34 1 5.1340 -4.0935 5.7875 35 1 2.3622 -6.7477 6.7152 36 1 2.2174 -8.4781 8.4612 37 1 3.7924 -5.7289 11.3163 38 1 3.9466 -4.0017 9.5682 39 1 1.3756 -3.4325 6.1111 40 1 1.6181 -5.2178 5.8761 41 1 1.9944 -3.7331 2.7181 42 1 1.1368 -2.6287 0.6669 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_9705040_13915762.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:48:35 Heat of formation + Delta-G solvation = -74.953457 kcal Electronic energy + Delta-G solvation = -29186.621090 eV Core-core repulsion = 24491.394366 eV Total energy + Delta-G solvation = -4695.226724 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 351.119 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -51.23330 -48.75775 -48.70985 -41.69250 -41.02081 -39.42458 -37.82405 -35.43191 -33.47115 -32.85211 -32.11029 -30.98789 -27.93142 -26.69304 -26.33558 -25.19626 -24.53937 -23.99724 -22.84562 -22.17290 -20.15036 -19.59520 -19.52894 -19.38967 -18.91145 -18.40233 -17.40647 -17.10023 -16.52619 -16.45729 -16.10370 -15.91674 -15.84141 -15.56454 -15.49162 -15.39809 -15.22159 -15.16822 -14.95812 -14.87310 -14.67359 -14.46465 -14.31105 -14.25776 -14.07035 -13.99714 -13.46096 -13.35068 -13.28367 -12.76027 -12.43440 -12.29600 -12.13238 -11.92090 -11.84375 -11.23662 -11.00574 -10.72769 -10.40554 -10.37461 -10.06727 -9.94094 -8.67832 -4.98708 -0.13224 0.24046 0.27043 0.41542 1.34964 1.61819 1.64673 1.98203 2.07768 2.41169 2.68715 2.83770 2.96539 3.35263 3.45042 3.56893 3.61854 3.64733 3.71058 3.80874 3.83243 3.88298 3.97246 4.00251 4.10973 4.19620 4.30362 4.36729 4.40678 4.50873 4.61026 4.67892 4.77625 4.79960 4.84034 4.89886 5.02146 5.04352 5.07906 5.15197 5.18936 5.23249 5.35681 5.52520 5.59962 5.77346 6.07891 6.55614 6.80921 7.15946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.053 4.053 3 Si 0.763 3.237 4 C -0.238 4.238 5 C 0.147 3.853 6 N -0.565 5.565 7 C 0.398 3.602 8 N -0.702 5.702 9 C 0.128 3.872 10 H 0.109 0.891 11 C -0.128 4.128 12 C -0.075 4.075 13 H 0.105 0.895 14 C -0.038 4.038 15 C -0.118 4.118 16 C -0.076 4.076 17 C -0.203 4.203 18 C 0.506 3.494 19 F -0.185 7.185 20 F -0.182 7.182 21 F -0.183 7.183 22 C -0.078 4.078 23 C -0.123 4.123 24 C -0.143 4.143 25 C -0.240 4.240 26 C -0.014 4.014 27 H 0.394 0.606 28 H 0.107 0.893 29 H -0.288 1.288 30 H -0.297 1.297 31 H 0.168 0.832 32 H 0.407 0.593 33 H 0.110 0.890 34 H 0.078 0.922 35 H 0.159 0.841 36 H 0.144 0.856 37 H 0.140 0.860 38 H 0.149 0.851 39 H 0.068 0.932 40 H 0.110 0.890 41 H 0.153 0.847 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.554 0.888 -0.712 1.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.164 4.164 3 Si 0.670 3.330 4 C -0.243 4.243 5 C -0.010 4.010 6 N -0.283 5.283 7 C 0.162 3.838 8 N -0.333 5.333 9 C 0.022 3.978 10 H 0.127 0.873 11 C -0.166 4.166 12 C -0.093 4.093 13 H 0.123 0.877 14 C -0.038 4.038 15 C -0.135 4.135 16 C -0.094 4.094 17 C -0.205 4.205 18 C 0.452 3.548 19 F -0.166 7.166 20 F -0.163 7.163 21 F -0.164 7.164 22 C -0.096 4.096 23 C -0.140 4.140 24 C -0.182 4.182 25 C -0.265 4.265 26 C -0.040 4.040 27 H 0.244 0.756 28 H 0.124 0.876 29 H -0.215 1.215 30 H -0.225 1.225 31 H 0.184 0.816 32 H 0.243 0.757 33 H 0.128 0.872 34 H 0.096 0.904 35 H 0.176 0.824 36 H 0.162 0.838 37 H 0.157 0.843 38 H 0.167 0.833 39 H 0.086 0.914 40 H 0.128 0.872 41 H 0.171 0.829 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.432 1.400 -0.993 1.770 hybrid contribution -0.081 -1.088 -0.009 1.091 sum 0.351 0.312 -1.002 1.107 Atomic orbital electron populations 1.86457 1.17409 1.82104 1.50476 1.24827 0.85042 1.09999 0.96582 0.93911 0.77905 0.75960 0.85206 1.21039 1.06807 0.96352 1.00103 1.22430 0.91518 0.99464 0.87593 1.67135 1.26859 1.09891 1.24366 1.18609 0.89494 0.88354 0.87361 1.44249 1.59846 1.09013 1.20217 1.21964 0.96893 0.80167 0.98814 0.87301 1.23420 0.97619 1.02532 0.93038 1.21676 0.98228 0.97292 0.92105 0.87710 1.20160 0.94385 0.94823 0.94396 1.21272 0.99743 0.92058 1.00450 1.21161 0.96332 1.00975 0.90951 1.20027 1.10919 0.95088 0.94427 1.18535 0.73420 0.81339 0.81521 1.93219 1.42660 1.96336 1.84384 1.93183 1.95281 1.43580 1.84247 1.93183 1.61393 1.94800 1.67063 1.21124 0.95967 0.91350 1.01180 1.21325 1.00379 1.00096 0.92235 1.23665 0.96304 1.03627 0.94599 1.21708 1.06122 1.02248 0.96409 1.21413 0.93202 0.93569 0.95780 0.75622 0.87559 1.21524 1.22522 0.81556 0.75669 0.87166 0.90356 0.82379 0.83844 0.84254 0.83286 0.91364 0.87228 0.82939 0.83786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.30 12.84 -148.98 -1.91 -1.62 16 2 C -0.05 0.06 2.82 71.24 0.20 0.26 16 3 Si 0.76 -1.58 29.83 68.60 2.05 0.47 16 4 C -0.24 -0.01 5.36 -19.76 -0.11 -0.12 16 5 C 0.15 0.17 9.84 84.62 0.83 1.01 16 6 N -0.56 -2.24 10.39 -193.26 -2.01 -4.25 16 7 C 0.40 0.41 7.65 133.06 1.02 1.43 16 8 N -0.70 2.60 5.43 -322.04 -1.75 0.85 16 9 C 0.13 -1.05 4.11 45.52 0.19 -0.87 16 10 H 0.11 -1.05 6.10 -2.39 -0.01 -1.07 16 11 C -0.13 1.21 7.29 31.12 0.23 1.44 16 12 C -0.07 0.63 3.86 -11.01 -0.04 0.59 16 13 H 0.10 -0.90 8.09 -2.39 -0.02 -0.92 16 14 C -0.04 0.21 5.29 -19.87 -0.11 0.10 16 15 C -0.12 0.66 8.62 22.27 0.19 0.85 16 16 C -0.08 0.16 9.40 22.27 0.21 0.37 16 17 C -0.20 -0.21 5.45 -19.87 -0.11 -0.31 16 18 C 0.51 1.96 3.36 71.23 0.24 2.20 16 19 F -0.18 -1.09 17.30 44.97 0.78 -0.31 16 20 F -0.18 -0.86 16.46 44.97 0.74 -0.12 16 21 F -0.18 -0.95 16.46 44.97 0.74 -0.21 16 22 C -0.08 0.07 9.40 22.27 0.21 0.28 16 23 C -0.12 0.47 9.71 22.27 0.22 0.68 16 24 C -0.14 1.25 7.25 31.12 0.23 1.48 16 25 C -0.24 0.27 9.29 22.50 0.21 0.48 16 26 C -0.01 0.01 9.83 22.44 0.22 0.23 16 27 H 0.39 -3.21 8.70 -74.06 -0.64 -3.86 16 28 H 0.11 -0.02 7.96 -2.39 -0.02 -0.04 16 29 H -0.29 -0.93 7.11 99.48 0.71 -0.22 16 30 H -0.30 -1.58 7.11 99.48 0.71 -0.87 16 31 H 0.17 -0.50 4.91 -2.91 -0.01 -0.51 16 32 H 0.41 -1.68 8.83 -92.70 -0.82 -2.50 16 33 H 0.11 -1.20 7.73 -2.39 -0.02 -1.22 16 34 H 0.08 -0.65 8.14 -2.39 -0.02 -0.67 16 35 H 0.16 -1.70 6.64 -2.91 -0.02 -1.72 16 36 H 0.14 -0.61 7.60 -2.91 -0.02 -0.63 16 37 H 0.14 -0.35 7.60 -2.91 -0.02 -0.37 16 38 H 0.15 -1.11 8.05 -2.91 -0.02 -1.13 16 39 H 0.07 -0.39 8.14 -2.39 -0.02 -0.41 16 40 H 0.11 -1.22 6.30 -2.39 -0.02 -1.23 16 41 H 0.15 -0.87 6.04 -2.91 -0.02 -0.89 16 42 H 0.14 -0.39 8.06 -2.91 -0.02 -0.41 16 Total: 0.00 -15.90 360.37 2.14 -13.76 By element: Atomic # 1 Polarization: -18.35 SS G_CDS: -0.32 Total: -18.67 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: 3.83 Total: 10.09 kcal Atomic # 7 Polarization: 0.36 SS G_CDS: -3.76 Total: -3.40 kcal Atomic # 8 Polarization: 0.30 SS G_CDS: -1.91 Total: -1.62 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 2.26 Total: -0.64 kcal Atomic # 14 Polarization: -1.58 SS G_CDS: 2.05 Total: 0.47 kcal Total: -15.90 2.14 -13.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_9705040_13915762.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.195 kcal (2) G-P(sol) polarization free energy of solvation -15.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds