Wall clock time and date at job start Tue Mar 9 2021 13:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33330 * 125.94995 * 2 1 4 4 C 1.50701 * 122.70899 * 0.02562 * 3 2 1 5 5 O 1.42899 * 109.47538 * 329.99790 * 4 3 2 6 6 Si 1.86307 * 109.46838 * 209.99704 * 4 3 2 7 7 N 1.32119 * 114.57789 * 179.82832 * 3 2 1 8 8 C 1.29691 * 116.86662 * 0.47839 * 7 3 2 9 9 N 1.38603 * 124.95113 * 179.73721 * 8 7 3 10 10 C 1.46505 * 120.00248 * 179.97438 * 9 8 7 11 11 H 1.09002 * 112.84620 * 23.80496 * 10 9 8 12 12 C 1.53780 * 113.61347 * 155.00049 * 10 9 8 13 13 C 1.53787 * 87.07872 * 89.11940 * 12 10 9 14 14 H 1.09003 * 113.60868 * 270.87743 * 13 12 10 15 15 C 1.50703 * 113.61398 * 140.06692 * 13 12 10 16 16 C 1.38239 * 119.99666 * 299.72255 * 15 13 12 17 17 C 1.38228 * 119.99919 * 179.81304 * 16 15 13 18 18 C 1.38242 * 119.99998 * 0.41647 * 17 16 15 19 19 C 1.50701 * 119.99942 * 179.79118 * 18 17 16 20 20 F 1.39904 * 109.47208 * 270.02197 * 19 18 17 21 21 F 1.39898 * 109.47185 * 30.02325 * 19 18 17 22 22 F 1.39903 * 109.47018 * 150.02528 * 19 18 17 23 23 C 1.38234 * 119.99801 * 359.81723 * 18 17 16 24 24 C 1.38227 * 120.00268 * 119.99962 * 15 13 12 25 25 C 1.53778 * 87.08166 * 25.43175 * 13 12 10 26 26 S 1.70975 * 110.09880 * 359.73947 * 8 7 3 27 27 H 1.09002 * 109.47152 * 179.71292 * 1 2 3 28 28 H 1.09001 * 109.46980 * 59.71392 * 1 2 3 29 29 H 1.09004 * 109.47113 * 299.71373 * 1 2 3 30 30 H 1.09004 * 109.47025 * 90.00120 * 4 3 2 31 31 H 0.96696 * 114.00235 * 180.02562 * 5 4 3 32 32 H 1.48499 * 109.99907 * 298.68454 * 6 4 3 33 33 H 1.48497 * 109.99561 * 60.00360 * 6 4 3 34 34 H 0.97010 * 120.00214 * 359.97438 * 9 8 7 35 35 H 1.08997 * 113.61045 * 203.66294 * 12 10 9 36 36 H 1.08998 * 113.61613 * 334.57247 * 12 10 9 37 37 H 1.08000 * 120.00173 * 0.02562 * 16 15 13 38 38 H 1.07994 * 120.00362 * 180.20596 * 17 16 15 39 39 H 1.08003 * 120.00001 * 179.97438 * 23 18 17 40 40 H 1.08006 * 120.00129 * 359.97438 * 24 15 13 41 41 H 1.09004 * 113.61059 * 220.02375 * 25 13 12 42 42 H 1.08999 * 113.61722 * 89.11956 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7414 2.4830 0.0006 5 8 0.4810 2.5024 -0.6726 6 14 2.9320 3.6152 -0.8778 7 7 3.5850 0.8188 0.0036 8 6 3.9315 -0.4309 -0.0030 9 7 5.2384 -0.8926 -0.0059 10 6 5.5066 -2.3328 -0.0129 11 1 4.6803 -2.9152 -0.4207 12 6 6.8745 -2.7018 -0.6108 13 6 7.4480 -2.5480 0.8078 14 1 7.7793 -1.5352 1.0373 15 6 8.4744 -3.5935 1.1607 16 6 8.1275 -4.9317 1.1565 17 6 9.0699 -5.8910 1.4764 18 6 10.3570 -5.5116 1.8088 19 6 11.3832 -6.5572 2.1621 20 9 11.3483 -6.7981 3.5398 21 9 11.0981 -7.7415 1.4743 22 9 12.6559 -6.1025 1.8003 23 6 10.7026 -4.1732 1.8177 24 6 9.7611 -3.2141 1.4940 25 6 6.0366 -2.8673 1.3281 26 16 2.5412 -1.4261 -0.0078 27 1 -0.3633 -1.0277 -0.0051 28 1 -0.3633 0.5183 -0.8874 29 1 -0.3633 0.5094 0.8926 30 1 1.6095 2.8212 1.0284 31 1 0.0688 3.3762 -0.7108 32 1 4.2369 3.6285 -0.1690 33 1 3.1203 3.1649 -2.2802 34 1 5.9756 -0.2620 -0.0032 35 1 6.9231 -3.7213 -0.9932 36 1 7.2551 -1.9648 -1.3179 37 1 7.1211 -5.2279 0.9000 38 1 8.7999 -6.9366 1.4699 39 1 11.7080 -3.8768 2.0778 40 1 10.0310 -2.1684 1.5012 41 1 5.7407 -2.2638 2.1862 42 1 5.8561 -3.9321 1.4758 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_9705040_15704122.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:48:52 Heat of formation + Delta-G solvation = -71.799147 kcal Electronic energy + Delta-G solvation = -29849.405544 eV Core-core repulsion = 25087.930229 eV Total energy + Delta-G solvation = -4761.475315 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 371.091 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -51.25812 -48.78227 -48.73427 -41.58405 -41.00027 -39.58374 -37.66026 -35.61433 -33.24108 -32.32561 -32.06172 -29.36599 -27.84234 -26.82593 -25.74316 -25.14640 -24.42927 -23.97205 -22.63744 -20.83542 -20.25372 -19.61452 -19.55153 -19.44234 -19.12684 -18.21885 -17.62683 -16.95035 -16.74810 -16.42962 -16.22531 -15.96092 -15.69785 -15.58336 -15.48281 -15.40811 -15.19318 -14.99416 -14.89815 -14.89621 -14.56479 -14.48759 -14.29255 -14.15358 -14.04859 -13.91492 -13.58687 -13.45113 -13.29259 -13.04533 -12.84085 -12.46085 -12.33912 -12.06659 -11.94799 -11.78310 -11.35221 -11.07397 -10.78653 -10.41352 -10.11136 -10.07128 -9.99734 -8.71666 -4.96072 -0.18406 -0.11279 0.04024 0.22757 0.63620 1.27142 1.58906 1.66270 1.75487 1.78557 2.20259 2.36080 2.65586 2.93731 3.11176 3.28555 3.32315 3.49464 3.54438 3.74382 3.83948 3.85431 3.95874 4.08386 4.08953 4.25178 4.28995 4.31616 4.36664 4.43355 4.62186 4.68123 4.69385 4.79198 4.82624 4.87166 4.93125 4.95764 5.00427 5.09992 5.14169 5.16119 5.34389 5.45926 5.62531 5.72508 6.16708 6.76289 6.94952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C -0.244 4.244 3 C 0.070 3.930 4 C -0.035 4.035 5 O -0.552 6.552 6 Si 0.810 3.190 7 N -0.584 5.584 8 C 0.307 3.693 9 N -0.673 5.673 10 C 0.120 3.880 11 H 0.103 0.897 12 C -0.123 4.123 13 C -0.074 4.074 14 H 0.105 0.895 15 C -0.038 4.038 16 C -0.117 4.117 17 C -0.075 4.075 18 C -0.202 4.202 19 C 0.506 3.494 20 F -0.184 7.184 21 F -0.181 7.181 22 F -0.183 7.183 23 C -0.078 4.078 24 C -0.122 4.122 25 C -0.141 4.141 26 S 0.132 5.868 27 H 0.064 0.936 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.407 0.593 32 H -0.303 1.303 33 H -0.323 1.323 34 H 0.413 0.587 35 H 0.117 0.883 36 H 0.081 0.919 37 H 0.159 0.841 38 H 0.145 0.855 39 H 0.140 0.860 40 H 0.149 0.851 41 H 0.070 0.930 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.418 2.340 -0.081 5.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.366 4.366 3 C -0.058 4.058 4 C -0.147 4.147 5 O -0.362 6.362 6 Si 0.719 3.281 7 N -0.313 5.313 8 C -0.064 4.064 9 N -0.313 5.313 10 C 0.014 3.986 11 H 0.121 0.879 12 C -0.161 4.161 13 C -0.092 4.092 14 H 0.124 0.876 15 C -0.038 4.038 16 C -0.135 4.135 17 C -0.093 4.093 18 C -0.203 4.203 19 C 0.452 3.548 20 F -0.166 7.166 21 F -0.162 7.162 22 F -0.164 7.164 23 C -0.096 4.096 24 C -0.139 4.139 25 C -0.180 4.180 26 S 0.381 5.619 27 H 0.083 0.917 28 H 0.105 0.895 29 H 0.098 0.902 30 H 0.117 0.883 31 H 0.260 0.740 32 H -0.231 1.231 33 H -0.252 1.252 34 H 0.252 0.748 35 H 0.136 0.864 36 H 0.100 0.900 37 H 0.177 0.823 38 H 0.163 0.837 39 H 0.158 0.842 40 H 0.166 0.834 41 H 0.089 0.911 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.255 0.880 -0.545 3.415 hybrid contribution 0.870 0.209 0.398 0.979 sum -2.385 1.089 -0.147 2.626 Atomic orbital electron populations 1.20113 0.84990 1.02000 1.04060 1.25562 1.02649 0.92856 1.15560 1.19405 0.86472 0.96749 1.03187 1.23972 0.93527 0.94618 1.02577 1.86384 1.33063 1.37918 1.78837 0.95331 0.76177 0.82767 0.73869 1.65757 1.18106 1.18178 1.29269 1.23499 0.92994 0.91336 0.98542 1.43755 1.00950 1.07172 1.79388 1.22137 0.99315 0.78631 0.98499 0.87926 1.23423 0.92539 1.04377 0.95748 1.21660 0.92594 0.97870 0.97064 0.87634 1.20081 0.94239 0.94535 0.94945 1.21269 1.00578 0.91605 1.00017 1.21162 0.90992 1.01653 0.95489 1.20043 0.95230 0.93735 1.11322 1.18521 0.80819 0.81147 0.74308 1.93221 1.96507 1.94969 1.31873 1.93184 1.93351 1.50121 1.79587 1.93184 1.42848 1.88826 1.91558 1.21126 1.01039 0.90961 0.96439 1.21308 0.92595 1.00463 0.99584 1.23686 0.94017 1.03341 0.96981 1.83696 0.95249 1.09410 1.73584 0.91683 0.89455 0.90218 0.88337 0.74029 1.23142 1.25222 0.74817 0.86435 0.89999 0.82340 0.83714 0.84190 0.83355 0.91102 0.86560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.09 8.92 71.24 0.64 0.54 16 2 C -0.24 -1.54 6.50 24.58 0.16 -1.38 16 3 C 0.07 0.61 5.95 41.41 0.25 0.85 16 4 C -0.03 -0.07 2.93 71.24 0.21 0.13 16 5 O -0.55 0.86 9.79 -148.98 -1.46 -0.60 16 6 Si 0.81 2.37 32.09 68.60 2.20 4.57 16 7 N -0.58 -6.26 8.95 -189.85 -1.70 -7.96 16 8 C 0.31 1.82 8.24 179.32 1.48 3.30 16 9 N -0.67 0.09 5.42 -327.88 -1.78 -1.68 16 10 C 0.12 -0.68 4.31 45.52 0.20 -0.49 16 11 H 0.10 -0.63 7.06 -2.39 -0.02 -0.65 16 12 C -0.12 1.01 7.29 31.12 0.23 1.24 16 13 C -0.07 0.55 3.85 -11.01 -0.04 0.51 16 14 H 0.11 -0.80 8.09 -2.39 -0.02 -0.82 16 15 C -0.04 0.19 5.29 -19.87 -0.11 0.08 16 16 C -0.12 0.62 8.63 22.27 0.19 0.81 16 17 C -0.07 0.14 9.40 22.27 0.21 0.35 16 18 C -0.20 -0.25 5.45 -19.86 -0.11 -0.35 16 19 C 0.51 2.04 3.36 71.24 0.24 2.28 16 20 F -0.18 -1.12 17.30 44.97 0.78 -0.34 16 21 F -0.18 -0.88 16.46 44.97 0.74 -0.14 16 22 F -0.18 -0.98 16.46 44.97 0.74 -0.24 16 23 C -0.08 0.05 9.40 22.27 0.21 0.26 16 24 C -0.12 0.41 9.71 22.27 0.22 0.63 16 25 C -0.14 1.02 7.25 31.12 0.23 1.25 16 26 S 0.13 0.42 21.69 -56.49 -1.23 -0.80 16 27 H 0.06 -0.02 8.14 -2.39 -0.02 -0.04 16 28 H 0.09 0.21 6.72 -2.39 -0.02 0.19 16 29 H 0.08 0.03 8.14 -2.38 -0.02 0.01 16 30 H 0.10 -0.17 7.96 -2.38 -0.02 -0.19 16 31 H 0.41 -5.06 8.74 -74.06 -0.65 -5.70 16 32 H -0.30 -3.34 7.11 99.48 0.71 -2.64 16 33 H -0.32 -4.09 7.11 99.48 0.71 -3.39 16 34 H 0.41 -0.39 8.83 -92.70 -0.82 -1.21 16 35 H 0.12 -1.21 7.73 -2.39 -0.02 -1.23 16 36 H 0.08 -0.59 8.14 -2.39 -0.02 -0.61 16 37 H 0.16 -1.65 6.65 -2.91 -0.02 -1.67 16 38 H 0.15 -0.60 7.60 -2.91 -0.02 -0.62 16 39 H 0.14 -0.31 7.60 -2.91 -0.02 -0.33 16 40 H 0.15 -1.01 8.06 -2.91 -0.02 -1.04 16 41 H 0.07 -0.30 8.14 -2.39 -0.02 -0.32 16 42 H 0.12 -1.17 6.31 -2.39 -0.02 -1.19 16 Total: 0.00 -20.79 372.79 2.17 -18.63 By element: Atomic # 1 Polarization: -21.12 SS G_CDS: -0.32 Total: -21.44 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: 4.19 Total: 10.01 kcal Atomic # 7 Polarization: -6.17 SS G_CDS: -3.48 Total: -9.65 kcal Atomic # 8 Polarization: 0.86 SS G_CDS: -1.46 Total: -0.60 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 2.26 Total: -0.72 kcal Atomic # 14 Polarization: 2.37 SS G_CDS: 2.20 Total: 4.57 kcal Atomic # 16 Polarization: 0.42 SS G_CDS: -1.23 Total: -0.80 kcal Total: -20.79 2.17 -18.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_9705040_15704122.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.171 kcal (2) G-P(sol) polarization free energy of solvation -20.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds