Wall clock time and date at job start Tue Mar 9 2021 13:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33325 * 125.94863 * 2 1 4 4 C 1.50698 * 122.71228 * 0.02562 * 3 2 1 5 5 O 1.42907 * 109.47018 * 329.99728 * 4 3 2 6 6 Si 1.86302 * 109.47193 * 209.99777 * 4 3 2 7 7 N 1.32116 * 114.57865 * 179.74750 * 3 2 1 8 8 C 1.29689 * 116.86998 * 0.47718 * 7 3 2 9 9 N 1.38599 * 124.95496 * 179.80916 * 8 7 3 10 10 C 1.46503 * 120.00188 * 179.72272 * 9 8 7 11 11 H 1.09004 * 112.84935 * 336.19328 * 10 9 8 12 12 C 1.53776 * 113.69317 * 107.46749 * 10 9 8 13 13 C 1.53775 * 87.08380 * 89.12498 * 12 10 9 14 14 H 1.08996 * 113.69638 * 270.87247 * 13 12 10 15 15 C 1.50706 * 113.61422 * 139.97826 * 13 12 10 16 16 C 1.38438 * 120.00944 * 142.22779 * 15 13 12 17 17 F 1.35093 * 120.02843 * 0.02562 * 16 15 13 18 18 C 1.38485 * 119.94501 * 179.72929 * 16 15 13 19 19 C 1.38175 * 119.97134 * 0.57327 * 18 16 15 20 20 C 1.38265 * 120.03126 * 359.69976 * 19 18 16 21 21 C 1.38220 * 120.01305 * 322.50782 * 15 13 12 22 22 C 1.53781 * 87.08212 * 25.43316 * 13 12 10 23 23 S 1.70966 * 110.09581 * 359.54651 * 8 7 3 24 24 H 1.09002 * 109.46823 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47722 * 300.02533 * 1 2 3 26 26 H 1.08999 * 109.47247 * 60.02634 * 1 2 3 27 27 H 1.08998 * 109.47917 * 89.99606 * 4 3 2 28 28 H 0.96701 * 113.99858 * 180.02562 * 5 4 3 29 29 H 1.48496 * 109.99837 * 298.67628 * 6 4 3 30 30 H 1.48501 * 109.99825 * 59.99583 * 6 4 3 31 31 H 0.97003 * 120.00226 * 359.72086 * 9 8 7 32 32 H 1.09007 * 113.61205 * 334.57461 * 12 10 9 33 33 H 1.08996 * 113.61321 * 203.67871 * 12 10 9 34 34 H 1.08000 * 120.01246 * 180.29078 * 18 16 15 35 35 H 1.08002 * 119.98485 * 179.72742 * 19 18 16 36 36 H 1.08002 * 119.97799 * 180.02562 * 20 19 18 37 37 H 1.08003 * 119.98607 * 359.97438 * 21 15 13 38 38 H 1.09003 * 113.61408 * 89.11340 * 22 13 12 39 39 H 1.08996 * 113.61907 * 220.01712 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2897 1.0793 0.0000 4 6 1.7413 2.4830 0.0006 5 8 0.4809 2.5023 -0.6727 6 14 2.9319 3.6152 -0.8777 7 7 3.5849 0.8189 0.0053 8 6 3.9315 -0.4308 0.0001 9 7 5.2384 -0.8924 0.0006 10 6 5.5066 -2.3327 0.0005 11 1 4.6804 -2.9171 0.4056 12 6 6.0357 -2.8626 -1.3426 13 6 7.4475 -2.5460 -0.8217 14 1 7.7806 -1.5330 -1.0473 15 6 8.4717 -3.5920 -1.1794 16 6 9.7594 -3.2130 -1.5180 17 9 10.0989 -1.9054 -1.5274 18 6 10.7010 -4.1757 -1.8410 19 6 10.3511 -5.5124 -1.8366 20 6 9.0632 -5.8894 -1.5038 21 6 8.1241 -4.9298 -1.1752 22 6 6.8746 -2.7046 0.5965 23 16 2.5413 -1.4260 0.0000 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5142 0.8897 26 1 -0.3634 0.5134 -0.8902 27 1 1.6093 2.8213 1.0283 28 1 0.0687 3.3762 -0.7108 29 1 4.2367 3.6286 -0.1689 30 1 3.1203 3.1648 -2.2802 31 1 5.9755 -0.2619 0.0009 32 1 5.7398 -2.2559 -2.1985 33 1 5.8546 -3.9267 -1.4939 34 1 11.7072 -3.8815 -2.1008 35 1 11.0841 -6.2631 -2.0928 36 1 8.7907 -6.9345 -1.5002 37 1 7.1185 -5.2254 -0.9151 38 1 6.9228 -3.7255 0.9753 39 1 7.2558 -1.9704 1.3062 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_9705096_15704122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:49:29 Heat of formation + Delta-G solvation = 32.399813 kcal Electronic energy + Delta-G solvation = -23809.214309 eV Core-core repulsion = 20146.702971 eV Total energy + Delta-G solvation = -3662.511339 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 321.094 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.00380 -41.47758 -40.93582 -39.29810 -37.66843 -35.57062 -32.91178 -31.72757 -31.45314 -29.30170 -26.88763 -26.42720 -25.62767 -24.47301 -23.78549 -22.89836 -20.84784 -20.27205 -19.16008 -18.82284 -18.17474 -17.57284 -17.40476 -16.92352 -16.72690 -16.64674 -16.36970 -15.77820 -15.56479 -15.30263 -15.11735 -14.87285 -14.37910 -14.28372 -14.14955 -14.00693 -13.82961 -13.56409 -13.48069 -13.15974 -13.07635 -13.03080 -12.48112 -12.36873 -12.04805 -11.97891 -11.80379 -11.42487 -11.05127 -10.80815 -10.43287 -10.09967 -9.93846 -9.64185 -8.74217 -4.99629 -0.14001 0.01477 0.12559 0.19693 0.61773 1.24508 1.63480 1.72719 1.76199 2.18479 2.55432 3.08331 3.17103 3.30274 3.43298 3.49174 3.71987 3.82517 3.93805 4.01899 4.05457 4.08070 4.26306 4.28732 4.32217 4.35979 4.41822 4.62825 4.64086 4.76523 4.80817 4.86506 4.86906 4.92139 4.96940 5.05291 5.08934 5.20236 5.33834 5.37164 5.43913 5.59162 5.90401 6.10497 6.73890 6.93857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C -0.242 4.242 3 C 0.069 3.931 4 C -0.032 4.032 5 O -0.551 6.551 6 Si 0.809 3.191 7 N -0.586 5.586 8 C 0.305 3.695 9 N -0.676 5.676 10 C 0.124 3.876 11 H 0.111 0.889 12 C -0.138 4.138 13 C -0.078 4.078 14 H 0.082 0.918 15 C -0.111 4.111 16 C 0.066 3.934 17 F -0.156 7.156 18 C -0.164 4.164 19 C -0.099 4.099 20 C -0.125 4.125 21 C -0.091 4.091 22 C -0.119 4.119 23 S 0.139 5.861 24 H 0.066 0.934 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.100 0.900 28 H 0.408 0.592 29 H -0.306 1.306 30 H -0.324 1.324 31 H 0.410 0.590 32 H 0.063 0.937 33 H 0.123 0.877 34 H 0.139 0.861 35 H 0.153 0.847 36 H 0.156 0.844 37 H 0.159 0.841 38 H 0.124 0.876 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.836 -3.846 1.665 5.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.364 4.364 3 C -0.059 4.059 4 C -0.144 4.144 5 O -0.361 6.361 6 Si 0.717 3.283 7 N -0.315 5.315 8 C -0.066 4.066 9 N -0.316 5.316 10 C 0.019 3.981 11 H 0.129 0.871 12 C -0.177 4.177 13 C -0.096 4.096 14 H 0.101 0.899 15 C -0.112 4.112 16 C 0.047 3.953 17 F -0.135 7.135 18 C -0.183 4.183 19 C -0.117 4.117 20 C -0.143 4.143 21 C -0.109 4.109 22 C -0.157 4.157 23 S 0.387 5.613 24 H 0.084 0.916 25 H 0.099 0.901 26 H 0.106 0.894 27 H 0.118 0.882 28 H 0.260 0.740 29 H -0.234 1.234 30 H -0.253 1.253 31 H 0.248 0.752 32 H 0.082 0.918 33 H 0.141 0.859 34 H 0.157 0.843 35 H 0.171 0.829 36 H 0.174 0.826 37 H 0.176 0.824 38 H 0.142 0.858 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.694 -5.215 1.215 5.617 hybrid contribution 0.858 1.158 -0.017 1.441 sum -0.837 -4.058 1.197 4.313 Atomic orbital electron populations 1.20119 0.84802 1.02091 1.04116 1.25586 1.02712 0.92789 1.15358 1.19406 0.86391 0.96831 1.03318 1.23926 0.93471 0.94472 1.02569 1.86385 1.32951 1.37930 1.78827 0.95426 0.76240 0.82721 0.73866 1.65751 1.18277 1.18256 1.29209 1.23500 0.92909 0.91487 0.98694 1.43795 1.01099 1.07212 1.79450 1.22108 0.99277 0.78650 0.98098 0.87112 1.23690 0.93516 1.03559 0.96975 1.21463 0.93092 0.97103 0.97968 0.89923 1.19865 0.92527 0.96334 1.02489 1.18010 0.94990 0.77756 1.04563 1.91442 1.92951 1.34594 1.94504 1.21410 0.99982 0.93652 1.03271 1.21391 0.97774 0.94851 0.97652 1.21628 0.92919 1.01303 0.98435 1.21233 1.01315 0.90323 0.97999 1.23417 0.92563 1.04499 0.95233 1.83624 0.94909 1.09292 1.73459 0.91553 0.90133 0.89415 0.88198 0.73992 1.23444 1.25323 0.75187 0.91822 0.85850 0.84321 0.82916 0.82610 0.82359 0.85754 0.90484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.12 8.91 71.23 0.63 0.51 16 2 C -0.24 -1.79 6.50 24.57 0.16 -1.63 16 3 C 0.07 0.70 5.95 41.40 0.25 0.94 16 4 C -0.03 -0.11 2.93 71.24 0.21 0.10 16 5 O -0.55 0.36 9.80 -148.98 -1.46 -1.10 16 6 Si 0.81 3.79 32.09 68.60 2.20 5.99 16 7 N -0.59 -7.59 8.96 -189.87 -1.70 -9.29 16 8 C 0.30 2.55 8.24 179.32 1.48 4.02 16 9 N -0.68 -2.41 5.42 -327.89 -1.78 -4.18 16 10 C 0.12 -0.30 4.31 45.52 0.20 -0.10 16 11 H 0.11 -0.50 7.06 -2.38 -0.02 -0.51 16 12 C -0.14 0.39 7.25 31.12 0.23 0.61 16 13 C -0.08 0.04 3.79 -11.01 -0.04 0.00 16 14 H 0.08 0.27 7.44 -2.39 -0.02 0.26 16 15 C -0.11 -0.10 5.29 -19.82 -0.10 -0.21 16 16 C 0.07 0.34 7.25 22.38 0.16 0.50 16 17 F -0.16 -1.43 16.36 44.97 0.74 -0.70 16 18 C -0.16 -0.33 10.03 22.31 0.22 -0.10 16 19 C -0.10 0.22 10.04 22.26 0.22 0.44 16 20 C -0.13 0.53 10.04 22.27 0.22 0.75 16 21 C -0.09 0.34 8.61 22.26 0.19 0.53 16 22 C -0.12 0.47 7.29 31.12 0.23 0.70 16 23 S 0.14 0.62 21.69 -56.49 -1.23 -0.60 16 24 H 0.07 0.01 8.14 -2.39 -0.02 -0.01 16 25 H 0.08 0.06 8.14 -2.39 -0.02 0.04 16 26 H 0.09 0.26 6.74 -2.39 -0.02 0.25 16 27 H 0.10 -0.06 7.96 -2.39 -0.02 -0.08 16 28 H 0.41 -4.73 8.74 -74.06 -0.65 -5.38 16 29 H -0.31 -4.08 7.11 99.48 0.71 -3.37 16 30 H -0.32 -4.73 7.11 99.48 0.71 -4.02 16 31 H 0.41 1.65 8.83 -92.71 -0.82 0.83 16 32 H 0.06 0.07 8.14 -2.38 -0.02 0.05 16 33 H 0.12 -0.90 6.31 -2.39 -0.02 -0.92 16 34 H 0.14 0.01 8.06 -2.91 -0.02 -0.01 16 35 H 0.15 -1.04 8.06 -2.91 -0.02 -1.06 16 36 H 0.16 -1.46 8.06 -2.91 -0.02 -1.48 16 37 H 0.16 -1.48 6.66 -2.91 -0.02 -1.50 16 38 H 0.12 -0.95 7.72 -2.39 -0.02 -0.97 16 39 H 0.08 -0.19 8.14 -2.39 -0.02 -0.20 16 Total: 0.00 -21.62 339.17 0.70 -20.92 By element: Atomic # 1 Polarization: -17.77 SS G_CDS: -0.32 Total: -18.09 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: 4.25 Total: 7.06 kcal Atomic # 7 Polarization: -10.00 SS G_CDS: -3.48 Total: -13.48 kcal Atomic # 8 Polarization: 0.36 SS G_CDS: -1.46 Total: -1.10 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.74 Total: -0.70 kcal Atomic # 14 Polarization: 3.79 SS G_CDS: 2.20 Total: 5.99 kcal Atomic # 16 Polarization: 0.62 SS G_CDS: -1.23 Total: -0.60 kcal Total: -21.62 0.70 -20.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_9705096_15704122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.317 kcal (2) G-P(sol) polarization free energy of solvation -21.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds