Wall clock time and date at job start Tue Mar 9 2021 13:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86305 * 109.47109 * 2 1 4 4 C 1.50706 * 109.47007 * 119.99399 * 2 1 3 5 5 C 1.37986 * 120.32628 * 245.02565 * 4 2 1 6 6 N 1.32011 * 120.89630 * 179.72323 * 5 4 2 7 7 C 1.32340 * 121.64646 * 0.52009 * 6 5 4 8 8 N 1.39150 * 119.71521 * 179.75504 * 7 6 5 9 9 C 1.46496 * 119.99930 * 359.72813 * 8 7 6 10 10 H 1.09001 * 112.85032 * 336.19748 * 9 8 7 11 11 C 1.53782 * 113.68971 * 107.46277 * 9 8 7 12 12 C 1.53962 * 87.11063 * 89.19569 * 11 9 8 13 13 H 1.08993 * 113.61598 * 270.84305 * 12 11 9 14 14 C 1.50700 * 113.66521 * 139.88647 * 12 11 9 15 15 C 1.38444 * 120.01065 * 142.27739 * 14 12 11 16 16 F 1.35097 * 120.02445 * 359.97438 * 15 14 12 17 17 C 1.38479 * 119.94648 * 179.72724 * 15 14 12 18 18 C 1.38174 * 119.97362 * 0.57332 * 17 15 14 19 19 C 1.38260 * 120.02930 * 359.70135 * 18 17 15 20 20 C 1.38220 * 120.01767 * 322.55769 * 14 12 11 21 21 C 1.53781 * 113.61266 * 204.99851 * 9 8 7 22 22 C 1.39342 * 120.56197 * 359.47808 * 7 6 5 23 23 F 1.35107 * 120.46775 * 180.27513 * 22 7 6 24 24 C 1.38440 * 119.05938 * 0.25781 * 22 7 6 25 25 H 0.96696 * 114.00420 * 300.00617 * 1 2 3 26 26 H 1.08996 * 109.47478 * 239.99462 * 2 1 3 27 27 H 1.48501 * 109.99577 * 299.99582 * 3 2 1 28 28 H 1.48488 * 110.00380 * 61.31445 * 3 2 1 29 29 H 1.07995 * 119.54977 * 359.97438 * 5 4 2 30 30 H 0.97001 * 119.99382 * 179.72426 * 8 7 6 31 31 H 1.08997 * 113.61668 * 203.67120 * 11 9 8 32 32 H 1.08998 * 113.61674 * 334.49629 * 11 9 8 33 33 H 1.07996 * 120.01115 * 180.29021 * 17 15 14 34 34 H 1.08005 * 119.98378 * 179.72082 * 18 17 15 35 35 H 1.08002 * 119.97966 * 180.02562 * 19 18 17 36 36 H 1.08007 * 119.98386 * 359.94844 * 20 14 12 37 37 H 1.09002 * 113.61445 * 25.35018 * 21 9 8 38 38 H 1.09002 * 113.61408 * 156.16749 * 21 9 8 39 39 H 1.07995 * 120.75985 * 180.02562 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 1.2306 5 6 2.6376 -0.0198 2.1941 6 7 3.0782 -0.6296 3.2789 7 6 2.8716 -1.9209 3.4819 8 7 3.3583 -2.5239 4.6377 9 6 4.1011 -1.7311 5.6204 10 1 4.5600 -0.8422 5.1875 11 6 3.3132 -1.4510 6.9110 12 6 3.8936 -2.7677 7.4586 13 1 3.2831 -3.6417 7.2319 14 6 4.2970 -2.6941 8.9088 15 6 4.0885 -3.7803 9.7415 16 9 3.5228 -4.9064 9.2547 17 6 4.4648 -3.7132 11.0725 18 6 5.0370 -2.5584 11.5707 19 6 5.2396 -1.4723 10.7396 20 6 4.8700 -1.5402 9.4094 21 6 5.0644 -2.5640 6.4825 22 6 2.1658 -2.6804 2.5511 23 9 1.9512 -3.9974 2.7630 24 6 1.6873 -2.0664 1.4063 25 1 -0.3934 0.4417 0.7649 26 1 1.7923 -0.5139 -0.8899 27 1 1.5615 2.4678 -1.2086 28 1 1.5878 2.4586 1.2240 29 1 2.8292 1.0346 2.0608 30 1 3.2057 -3.4692 4.7925 31 1 3.6561 -0.5672 7.4489 32 1 2.2318 -1.4710 6.7755 33 1 4.3069 -4.5615 11.7219 34 1 5.3265 -2.5044 12.6099 35 1 5.6873 -0.5702 11.1297 36 1 5.0293 -0.6914 8.7608 37 1 5.3968 -3.4838 6.0013 38 1 5.8869 -1.9846 6.9020 39 1 1.1365 -2.6288 0.6669 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_9705096_17656566.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:49:32 Heat of formation + Delta-G solvation = -14.488461 kcal Electronic energy + Delta-G solvation = -25658.429205 eV Core-core repulsion = 21590.816035 eV Total energy + Delta-G solvation = -4067.613170 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.98259 -49.95413 -41.61976 -40.89754 -39.18400 -38.00464 -35.53749 -33.26066 -32.26038 -31.45202 -30.82914 -26.88607 -26.72562 -26.09099 -24.88431 -23.70335 -23.00147 -22.57452 -20.26173 -19.54346 -18.76042 -18.47527 -18.25055 -17.58960 -17.44101 -17.06363 -16.89575 -16.67396 -16.30763 -16.16403 -15.92721 -15.52200 -15.38253 -15.10843 -14.85242 -14.71364 -14.34535 -14.16105 -14.05184 -13.90188 -13.49013 -13.44886 -13.11887 -12.97226 -12.65598 -12.36235 -12.07402 -11.96853 -11.88132 -11.28065 -11.14894 -10.76411 -10.65433 -10.54282 -9.89807 -9.59461 -8.80241 -4.87443 -0.09972 0.08354 0.16977 0.23688 1.32580 1.63826 1.91185 2.00951 2.51157 2.59883 3.00288 3.21980 3.28431 3.42626 3.45277 3.58429 3.60938 3.67390 3.82963 3.84330 3.93230 3.97567 4.08563 4.17361 4.35799 4.37746 4.43259 4.52277 4.64557 4.72399 4.74038 4.82058 4.91296 4.95811 4.98465 4.99498 5.09247 5.12790 5.24887 5.39856 5.46609 5.48392 5.94250 5.98570 6.14633 6.50625 6.92009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.550 6.550 2 C -0.070 4.070 3 Si 0.769 3.231 4 C -0.202 4.202 5 C 0.147 3.853 6 N -0.521 5.521 7 C 0.385 3.615 8 N -0.700 5.700 9 C 0.137 3.863 10 H 0.113 0.887 11 C -0.136 4.136 12 C -0.078 4.078 13 H 0.084 0.916 14 C -0.111 4.111 15 C 0.066 3.934 16 F -0.155 7.155 17 C -0.164 4.164 18 C -0.100 4.100 19 C -0.126 4.126 20 C -0.092 4.092 21 C -0.126 4.126 22 C -0.040 4.040 23 F -0.143 7.143 24 C -0.040 4.040 25 H 0.386 0.614 26 H 0.128 0.872 27 H -0.302 1.302 28 H -0.274 1.274 29 H 0.185 0.815 30 H 0.413 0.587 31 H 0.112 0.888 32 H 0.059 0.941 33 H 0.139 0.861 34 H 0.153 0.847 35 H 0.155 0.845 36 H 0.156 0.844 37 H 0.073 0.927 38 H 0.115 0.885 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.497 4.316 1.647 6.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.179 4.179 3 Si 0.673 3.327 4 C -0.207 4.207 5 C -0.010 4.010 6 N -0.238 5.238 7 C 0.147 3.853 8 N -0.332 5.332 9 C 0.031 3.969 10 H 0.131 0.869 11 C -0.175 4.175 12 C -0.097 4.097 13 H 0.102 0.898 14 C -0.112 4.112 15 C 0.047 3.953 16 F -0.134 7.134 17 C -0.183 4.183 18 C -0.118 4.118 19 C -0.144 4.144 20 C -0.110 4.110 21 C -0.164 4.164 22 C -0.066 4.066 23 F -0.122 7.122 24 C -0.066 4.066 25 H 0.236 0.764 26 H 0.146 0.854 27 H -0.230 1.230 28 H -0.200 1.200 29 H 0.201 0.799 30 H 0.251 0.749 31 H 0.130 0.870 32 H 0.078 0.922 33 H 0.157 0.843 34 H 0.170 0.830 35 H 0.173 0.827 36 H 0.173 0.827 37 H 0.092 0.908 38 H 0.133 0.867 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 4.911 5.300 1.859 7.460 hybrid contribution -2.147 -2.107 0.005 3.008 sum 2.763 3.193 1.864 4.616 Atomic orbital electron populations 1.86588 1.18586 1.80386 1.50198 1.25078 0.83299 1.11872 0.97639 0.94107 0.90087 0.71548 0.76952 1.20914 1.05433 0.94070 1.00312 1.22773 0.90902 1.00414 0.86890 1.67356 1.25559 1.07040 1.23884 1.18534 0.90538 0.89214 0.87049 1.44339 1.58748 1.11943 1.18127 1.21817 0.92368 0.95329 0.87395 0.86924 1.23621 1.00167 0.97232 0.96462 1.21525 0.98856 0.99565 0.89721 0.89787 1.19916 1.01750 0.93706 0.95786 1.17989 1.00214 0.83426 0.93645 1.91442 1.83035 1.50259 1.88625 1.21405 1.02075 1.01159 0.93678 1.21376 0.97024 0.91882 1.01494 1.21615 0.99530 0.99730 0.93513 1.21221 0.96614 0.96884 0.96248 1.23430 0.96602 1.01102 0.95265 1.18176 1.09766 0.79396 0.99271 1.91468 1.93827 1.31863 1.95032 1.21447 0.95285 0.95022 0.94830 0.76424 0.85394 1.22990 1.19990 0.79897 0.74934 0.86999 0.92238 0.84274 0.82951 0.82747 0.82660 0.90799 0.86713 0.82820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.36 12.84 -148.98 -1.91 -2.27 16 2 C -0.07 0.21 2.82 71.24 0.20 0.41 16 3 Si 0.77 -3.70 29.91 68.60 2.05 -1.65 16 4 C -0.20 0.25 5.36 -19.76 -0.11 0.14 16 5 C 0.15 -0.18 9.84 84.61 0.83 0.65 16 6 N -0.52 -1.27 9.13 -193.03 -1.76 -3.03 16 7 C 0.38 1.35 7.49 133.08 1.00 2.34 16 8 N -0.70 -0.70 5.42 -321.78 -1.74 -2.45 16 9 C 0.14 -0.25 4.35 45.52 0.20 -0.06 16 10 H 0.11 -0.19 7.41 -2.39 -0.02 -0.21 16 11 C -0.14 0.26 7.27 31.18 0.23 0.49 16 12 C -0.08 0.02 3.80 -10.95 -0.04 -0.02 16 13 H 0.08 0.22 7.45 -2.39 -0.02 0.21 16 14 C -0.11 -0.15 5.30 -19.82 -0.10 -0.26 16 15 C 0.07 0.34 7.25 22.38 0.16 0.50 16 16 F -0.15 -1.34 16.36 44.97 0.74 -0.60 16 17 C -0.16 -0.34 10.03 22.31 0.22 -0.11 16 18 C -0.10 0.19 10.04 22.26 0.22 0.41 16 19 C -0.13 0.45 10.04 22.27 0.22 0.67 16 20 C -0.09 0.25 8.61 22.26 0.19 0.44 16 21 C -0.13 0.41 7.29 31.12 0.23 0.63 16 22 C -0.04 -0.17 7.35 22.58 0.17 0.00 16 23 F -0.14 -0.90 16.65 44.97 0.75 -0.15 16 24 C -0.04 -0.06 9.82 22.48 0.22 0.16 16 25 H 0.39 -1.86 8.70 -74.06 -0.64 -2.50 16 26 H 0.13 -0.61 7.96 -2.39 -0.02 -0.62 16 27 H -0.30 -1.03 7.11 99.48 0.71 -0.32 16 28 H -0.27 0.51 7.01 99.48 0.70 1.20 16 29 H 0.18 -1.15 4.84 -2.91 -0.01 -1.16 16 30 H 0.41 0.17 8.18 -92.71 -0.76 -0.59 16 31 H 0.11 -0.58 6.31 -2.39 -0.02 -0.59 16 32 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 33 H 0.14 -0.01 8.06 -2.91 -0.02 -0.03 16 34 H 0.15 -0.99 8.06 -2.91 -0.02 -1.02 16 35 H 0.15 -1.33 8.06 -2.91 -0.02 -1.35 16 36 H 0.16 -1.20 6.66 -2.91 -0.02 -1.22 16 37 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 38 H 0.11 -0.68 7.72 -2.39 -0.02 -0.69 16 39 H 0.15 -0.01 8.06 -2.91 -0.02 -0.03 16 Total: 0.00 -14.50 334.81 1.70 -12.80 By element: Atomic # 1 Polarization: -8.80 SS G_CDS: -0.25 Total: -9.05 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: 3.84 Total: 6.41 kcal Atomic # 7 Polarization: -1.97 SS G_CDS: -3.51 Total: -5.48 kcal Atomic # 8 Polarization: -0.36 SS G_CDS: -1.91 Total: -2.27 kcal Atomic # 9 Polarization: -2.24 SS G_CDS: 1.48 Total: -0.76 kcal Atomic # 14 Polarization: -3.70 SS G_CDS: 2.05 Total: -1.65 kcal Total: -14.50 1.70 -12.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_9705096_17656566.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.689 kcal (2) G-P(sol) polarization free energy of solvation -14.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds