Wall clock time and date at job start Tue Mar 9 2021 13:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86305 * 109.46645 * 2 1 4 4 C 1.50696 * 109.47131 * 240.00209 * 2 1 3 5 5 C 1.38605 * 120.72284 * 119.72031 * 4 2 1 6 6 N 1.32272 * 119.19639 * 179.71679 * 5 4 2 7 7 C 1.32498 * 120.74025 * 0.56331 * 6 5 4 8 8 N 1.38404 * 119.21393 * 179.73331 * 7 6 5 9 9 C 1.46502 * 120.00649 * 359.97427 * 8 7 6 10 10 H 1.09001 * 112.84116 * 25.33339 * 9 8 7 11 11 C 1.53776 * 113.61510 * 156.53298 * 9 8 7 12 12 C 1.53773 * 87.08154 * 89.11951 * 11 9 8 13 13 H 1.09003 * 113.61353 * 270.88179 * 12 11 9 14 14 C 1.50707 * 113.61611 * 140.06453 * 12 11 9 15 15 C 1.38235 * 119.99687 * 299.72942 * 14 12 11 16 16 C 1.38233 * 119.99738 * 179.78896 * 15 14 12 17 17 C 1.38236 * 120.00058 * 0.45549 * 16 15 14 18 18 C 1.38234 * 119.99856 * 359.77431 * 17 16 15 19 19 C 1.38228 * 120.00032 * 119.99586 * 14 12 11 20 20 C 1.53781 * 113.61581 * 254.14504 * 9 8 7 21 21 N 1.32489 * 121.56606 * 359.70737 * 7 6 5 22 22 C 1.32276 * 120.74075 * 0.02562 * 21 7 6 23 23 H 0.96700 * 114.00311 * 60.00382 * 1 2 3 24 24 H 1.08999 * 109.47293 * 119.99810 * 2 1 3 25 25 H 1.48499 * 109.99670 * 298.67876 * 3 2 1 26 26 H 1.48497 * 110.00233 * 59.99845 * 3 2 1 27 27 H 1.08001 * 120.39699 * 359.97438 * 5 4 2 28 28 H 0.97002 * 119.99564 * 179.97438 * 8 7 6 29 29 H 1.09004 * 113.60809 * 203.66974 * 11 9 8 30 30 H 1.08995 * 113.61318 * 334.56593 * 11 9 8 31 31 H 1.07997 * 120.00109 * 359.97438 * 15 14 12 32 32 H 1.08002 * 119.99779 * 180.25000 * 16 15 14 33 33 H 1.08005 * 120.00069 * 179.78873 * 17 16 15 34 34 H 1.07995 * 120.00006 * 179.97438 * 18 17 16 35 35 H 1.08002 * 120.00319 * 359.97438 * 19 14 12 36 36 H 1.08995 * 113.61555 * 25.42347 * 20 9 8 37 37 H 1.08994 * 113.61544 * 156.33274 * 20 9 8 38 38 H 1.07999 * 120.40058 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9314 -0.7103 -1.2304 5 6 2.7243 -0.0495 -2.1555 6 7 3.1533 -0.7038 -3.2220 7 6 2.8238 -1.9724 -3.4162 8 7 3.2857 -2.6249 -4.5460 9 6 4.1279 -1.9130 -5.5104 10 1 4.6736 -1.0822 -5.0632 11 6 5.0091 -2.8418 -6.3622 12 6 3.8379 -2.9118 -7.3562 13 1 3.1320 -3.7146 -7.1433 14 6 4.2687 -2.8788 -8.8000 15 6 4.9683 -1.7910 -9.2878 16 6 5.3672 -1.7627 -10.6110 17 6 5.0582 -2.8179 -11.4488 18 6 4.3544 -3.9036 -10.9621 19 6 3.9593 -3.9338 -9.6378 20 6 3.3959 -1.5406 -6.8105 21 7 2.0632 -2.6312 -2.5543 22 6 1.6054 -2.0370 -1.4648 23 1 -0.3934 0.4416 -0.7651 24 1 1.7924 -0.5138 0.8900 25 1 1.5877 2.4585 -1.2243 26 1 1.5613 2.4680 1.2084 27 1 2.9921 0.9859 -2.0050 28 1 3.0517 -3.5538 -4.6992 29 1 5.8959 -2.3530 -6.7659 30 1 5.2315 -3.7944 -5.8816 31 1 5.2059 -0.9646 -8.6344 32 1 5.9174 -0.9146 -10.9912 33 1 5.3669 -2.7943 -12.4835 34 1 4.1127 -4.7278 -11.6167 35 1 3.4093 -4.7820 -9.2577 36 1 2.3168 -1.4437 -6.6917 37 1 3.8423 -0.6968 -7.3366 38 1 0.9854 -2.5791 -0.7662 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_9705152_12175864.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:49:39 Heat of formation + Delta-G solvation = 90.836518 kcal Electronic energy + Delta-G solvation = -21010.444472 eV Core-core repulsion = 17820.880576 eV Total energy + Delta-G solvation = -3189.563896 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 284.127 amu Computer time = 2.84 seconds Orbital eigenvalues (eV) -42.17101 -41.09387 -39.18504 -38.08477 -35.53165 -34.73833 -32.53697 -31.81658 -31.21257 -26.96523 -26.70967 -26.08131 -25.45328 -23.60567 -23.20976 -22.37000 -20.23518 -19.58252 -18.58626 -18.07253 -17.89416 -16.64241 -16.55734 -16.27234 -16.10684 -15.87642 -15.70088 -15.65986 -14.98668 -14.63458 -14.48272 -14.25635 -14.08807 -14.01046 -13.50496 -13.22533 -13.15236 -12.69521 -12.29745 -12.15292 -11.93774 -11.91863 -11.74300 -11.68612 -11.25901 -11.06572 -10.69176 -10.06101 -9.81775 -9.56018 -9.11501 -4.90561 0.03613 0.13089 0.43579 0.50241 1.32512 1.61518 1.77077 1.99030 2.76263 2.84221 3.13982 3.41693 3.49275 3.62284 3.68282 3.71787 3.74744 3.81174 3.95211 4.06278 4.15730 4.23450 4.26543 4.30696 4.58540 4.63126 4.64179 4.68894 4.74553 4.77830 4.85470 4.99881 5.01511 5.11819 5.15517 5.19145 5.36231 5.58900 5.64505 5.72783 5.79691 6.03659 6.13012 6.38386 6.48983 7.25577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.057 4.057 3 Si 0.760 3.240 4 C -0.284 4.284 5 C 0.194 3.806 6 N -0.575 5.575 7 C 0.555 3.445 8 N -0.675 5.675 9 C 0.138 3.862 10 H 0.104 0.896 11 C -0.125 4.125 12 C -0.070 4.070 13 H 0.098 0.902 14 C -0.079 4.079 15 C -0.125 4.125 16 C -0.129 4.129 17 C -0.139 4.139 18 C -0.131 4.131 19 C -0.132 4.132 20 C -0.140 4.140 21 N -0.591 5.591 22 C 0.212 3.788 23 H 0.385 0.615 24 H 0.132 0.868 25 H -0.280 1.280 26 H -0.300 1.300 27 H 0.188 0.812 28 H 0.417 0.583 29 H 0.106 0.894 30 H 0.080 0.920 31 H 0.137 0.863 32 H 0.136 0.864 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.129 0.871 36 H 0.058 0.942 37 H 0.102 0.898 38 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.023 0.949 -0.465 3.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.355 6.355 2 C -0.167 4.167 3 Si 0.665 3.335 4 C -0.292 4.292 5 C 0.027 3.973 6 N -0.297 5.297 7 C 0.198 3.802 8 N -0.310 5.310 9 C 0.032 3.968 10 H 0.122 0.878 11 C -0.163 4.163 12 C -0.088 4.088 13 H 0.116 0.884 14 C -0.079 4.079 15 C -0.143 4.143 16 C -0.147 4.147 17 C -0.156 4.156 18 C -0.149 4.149 19 C -0.150 4.150 20 C -0.179 4.179 21 N -0.313 5.313 22 C 0.045 3.955 23 H 0.234 0.766 24 H 0.150 0.850 25 H -0.207 1.207 26 H -0.228 1.228 27 H 0.204 0.796 28 H 0.256 0.744 29 H 0.125 0.875 30 H 0.099 0.901 31 H 0.154 0.846 32 H 0.154 0.846 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.147 0.853 36 H 0.077 0.923 37 H 0.121 0.879 38 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 3.374 1.061 -0.900 3.650 hybrid contribution -1.731 -0.242 -0.009 1.748 sum 1.643 0.818 -0.909 2.048 Atomic orbital electron populations 1.86586 1.18522 1.80232 1.50136 1.24868 0.83196 1.11196 0.97430 0.94292 0.90190 0.72132 0.76864 1.21704 1.07633 0.97863 1.02015 1.23203 0.88195 0.99749 0.86193 1.67963 1.28765 1.08434 1.24558 1.19597 0.87182 0.86056 0.87377 1.43899 1.53568 1.14428 1.19143 1.21834 0.91509 0.95856 0.87571 0.87762 1.23389 0.97156 1.00572 0.95230 1.21619 0.98343 0.98745 0.90098 0.88424 1.19872 0.98039 0.94505 0.95457 1.21244 0.98603 0.98472 0.95975 1.21452 0.99998 0.99140 0.94104 1.21454 0.99126 0.94363 1.00704 1.21423 0.98506 0.98968 0.96019 1.21312 1.00747 0.98937 0.94016 1.23617 1.00650 0.97327 0.96310 1.67992 1.16804 1.40074 1.06454 1.23142 0.90330 0.91314 0.90702 0.76566 0.85044 1.20689 1.22782 0.79552 0.74428 0.87522 0.90147 0.84566 0.84645 0.84964 0.85008 0.85329 0.92324 0.87941 0.80062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.02 12.79 -148.98 -1.90 -1.89 16 2 C -0.06 0.19 2.85 71.23 0.20 0.39 16 3 Si 0.76 -3.30 29.87 68.60 2.05 -1.25 16 4 C -0.28 0.23 5.40 -19.69 -0.11 0.12 16 5 C 0.19 0.00 9.92 84.71 0.84 0.84 16 6 N -0.57 -2.46 9.15 -197.99 -1.81 -4.28 16 7 C 0.55 2.92 8.43 261.49 2.20 5.12 16 8 N -0.67 -0.85 5.41 -327.93 -1.77 -2.63 16 9 C 0.14 -0.19 4.30 45.52 0.20 0.01 16 10 H 0.10 0.01 7.41 -2.39 -0.02 -0.01 16 11 C -0.13 0.46 7.29 31.12 0.23 0.68 16 12 C -0.07 0.14 3.87 -10.92 -0.04 0.10 16 13 H 0.10 -0.24 8.09 -2.39 -0.02 -0.26 16 14 C -0.08 -0.07 5.29 -19.87 -0.11 -0.17 16 15 C -0.13 -0.05 8.63 22.27 0.19 0.14 16 16 C -0.13 -0.12 10.05 22.27 0.22 0.10 16 17 C -0.14 -0.22 10.05 22.27 0.22 0.01 16 18 C -0.13 -0.24 10.05 22.27 0.22 -0.02 16 19 C -0.13 -0.24 9.71 22.27 0.22 -0.02 16 20 C -0.14 0.19 7.27 31.21 0.23 0.42 16 21 N -0.59 -3.48 10.46 -197.99 -2.07 -5.55 16 22 C 0.21 0.43 10.92 84.71 0.93 1.35 16 23 H 0.39 -1.90 8.70 -74.06 -0.64 -2.54 16 24 H 0.13 -0.72 7.96 -2.39 -0.02 -0.74 16 25 H -0.28 0.14 7.11 99.48 0.71 0.84 16 26 H -0.30 -1.11 7.11 99.48 0.71 -0.40 16 27 H 0.19 -1.03 5.04 -2.91 -0.01 -1.04 16 28 H 0.42 -0.23 8.82 -92.71 -0.82 -1.05 16 29 H 0.11 -0.49 7.73 -2.38 -0.02 -0.51 16 30 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 31 H 0.14 -0.43 6.65 -2.91 -0.02 -0.45 16 32 H 0.14 -0.36 8.06 -2.91 -0.02 -0.38 16 33 H 0.13 -0.22 8.06 -2.91 -0.02 -0.25 16 34 H 0.13 -0.17 8.06 -2.91 -0.02 -0.20 16 35 H 0.13 -0.12 8.05 -2.91 -0.02 -0.14 16 36 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 37 H 0.10 -0.28 6.31 -2.39 -0.02 -0.29 16 38 H 0.18 -0.27 8.06 -2.91 -0.02 -0.30 16 Total: 0.00 -14.29 319.19 -0.19 -14.48 By element: Atomic # 1 Polarization: -7.64 SS G_CDS: -0.33 Total: -7.97 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: 5.65 Total: 9.07 kcal Atomic # 7 Polarization: -6.79 SS G_CDS: -5.66 Total: -12.45 kcal Atomic # 8 Polarization: 0.02 SS G_CDS: -1.90 Total: -1.89 kcal Atomic # 14 Polarization: -3.30 SS G_CDS: 2.05 Total: -1.25 kcal Total: -14.29 -0.19 -14.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_9705152_12175864.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.316 kcal (2) G-P(sol) polarization free energy of solvation -14.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.84 seconds