Wall clock time and date at job start Tue Mar 9 2021 13:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86295 * 109.47268 * 2 1 4 4 C 1.50695 * 109.46678 * 120.00190 * 2 1 3 5 5 C 1.37994 * 120.32410 * 245.02108 * 4 2 1 6 6 N 1.32010 * 120.89559 * 179.70439 * 5 4 2 7 7 C 1.32334 * 121.65278 * 0.56153 * 6 5 4 8 8 N 1.39140 * 119.72346 * 179.71253 * 7 6 5 9 9 C 1.46506 * 119.99689 * 359.73141 * 8 7 6 10 10 H 1.08996 * 112.84606 * 336.19084 * 9 8 7 11 11 C 1.53775 * 113.61531 * 107.50285 * 9 8 7 12 12 C 1.53775 * 87.08097 * 89.11408 * 11 9 8 13 13 H 1.09000 * 113.61796 * 270.87964 * 12 11 9 14 14 C 1.50710 * 113.68852 * 139.99181 * 12 11 9 15 15 C 1.38232 * 119.99938 * 322.18886 * 14 12 11 16 16 C 1.38236 * 119.99640 * 179.76618 * 15 14 12 17 17 C 1.38234 * 120.00022 * 0.50759 * 16 15 14 18 18 C 1.38227 * 120.00137 * 359.74650 * 17 16 15 19 19 C 1.38234 * 119.99863 * 142.46262 * 14 12 11 20 20 C 1.53777 * 87.08356 * 25.43295 * 12 11 9 21 21 C 1.39343 * 120.55959 * 359.43745 * 7 6 5 22 22 F 1.35102 * 120.47339 * 180.25139 * 21 7 6 23 23 C 1.38443 * 119.05740 * 0.27667 * 21 7 6 24 24 H 0.96700 * 114.00113 * 300.00655 * 1 2 3 25 25 H 1.09003 * 109.47117 * 239.99883 * 2 1 3 26 26 H 1.48496 * 110.00148 * 299.99599 * 3 2 1 27 27 H 1.48502 * 110.00197 * 61.31931 * 3 2 1 28 28 H 1.07995 * 119.55042 * 359.97438 * 5 4 2 29 29 H 0.97000 * 120.00194 * 179.72948 * 8 7 6 30 30 H 1.09003 * 113.61160 * 203.66277 * 11 9 8 31 31 H 1.09002 * 113.61807 * 334.56510 * 11 9 8 32 32 H 1.08001 * 120.00203 * 0.02562 * 15 14 12 33 33 H 1.07998 * 119.99788 * 180.23355 * 16 15 14 34 34 H 1.07997 * 119.99782 * 179.71970 * 17 16 15 35 35 H 1.08000 * 120.00171 * 179.97438 * 18 17 16 36 36 H 1.07999 * 120.00183 * 0.02562 * 19 14 12 37 37 H 1.09003 * 113.61538 * 220.02028 * 20 12 11 38 38 H 1.09005 * 113.61509 * 89.11639 * 20 12 11 39 39 H 1.08007 * 120.75522 * 180.02562 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9312 -0.7104 1.2304 5 6 2.6377 -0.0200 2.1940 6 7 3.0778 -0.6298 3.2790 7 6 2.8716 -1.9212 3.4818 8 7 3.3586 -2.5244 4.6372 9 6 4.1015 -1.7317 5.6201 10 1 4.5601 -0.8427 5.1872 11 6 3.3126 -1.4540 6.9105 12 6 3.8923 -2.7702 7.4548 13 1 3.2824 -3.6440 7.2252 14 6 4.2928 -2.7011 8.9061 15 6 4.8709 -1.5508 9.4095 16 6 5.2338 -1.4858 10.7418 17 6 5.0282 -2.5747 11.5681 18 6 4.4549 -3.7268 11.0634 19 6 4.0872 -3.7900 9.7324 20 6 5.0651 -2.5646 6.4817 21 6 2.1657 -2.6807 2.5509 22 9 1.9518 -3.9978 2.7622 23 6 1.6873 -2.0665 1.4061 24 1 -0.3933 0.4418 0.7650 25 1 1.7924 -0.5139 -0.8900 26 1 1.5617 2.4678 -1.2085 27 1 1.5880 2.4585 1.2242 28 1 2.8293 1.0344 2.0608 29 1 3.2064 -3.4698 4.7918 30 1 3.6543 -0.5704 7.4496 31 1 2.2313 -1.4763 6.7747 32 1 5.0352 -0.7015 8.7630 33 1 5.6820 -0.5858 11.1360 34 1 5.3158 -2.5255 12.6079 35 1 4.2946 -4.5777 11.7089 36 1 3.6399 -4.6905 9.3379 37 1 5.3987 -3.4835 5.9996 38 1 5.8860 -1.9847 6.9036 39 1 1.1364 -2.6290 0.6667 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_9705152_17656566.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:50:07 Heat of formation + Delta-G solvation = 29.550914 kcal Electronic energy + Delta-G solvation = -23274.603755 eV Core-core repulsion = 19678.354251 eV Total energy + Delta-G solvation = -3596.249504 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 301.122 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.96910 -41.62834 -40.94840 -39.16979 -37.99318 -35.49106 -33.24761 -32.15829 -31.78274 -30.77882 -26.84171 -26.66315 -26.01618 -24.76089 -23.51511 -22.98332 -22.33817 -20.17340 -19.49034 -18.59733 -18.25814 -17.85108 -17.58073 -17.02784 -16.56415 -16.30150 -16.09668 -15.84792 -15.80258 -15.50455 -15.23351 -14.79170 -14.52852 -14.34342 -14.23999 -14.06308 -13.99778 -13.48640 -13.43489 -13.18938 -12.69815 -12.62904 -12.17759 -12.04720 -11.91241 -11.70147 -11.22930 -11.08764 -10.75344 -10.64633 -10.53867 -9.82391 -9.56167 -8.78734 -4.87927 -0.09329 0.09428 0.43074 0.49552 1.32338 1.63302 1.92749 2.00298 2.51952 2.83485 3.01091 3.24655 3.43195 3.51640 3.60319 3.72181 3.74078 3.84751 3.95357 3.98933 4.06358 4.15095 4.25440 4.29763 4.43620 4.52343 4.59092 4.63786 4.70427 4.73581 4.78067 4.86314 4.97984 5.01211 5.02166 5.12224 5.17680 5.19901 5.44801 5.58362 5.63885 5.72997 5.99650 6.12350 6.17503 6.50461 6.94352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.068 4.068 3 Si 0.766 3.234 4 C -0.202 4.202 5 C 0.146 3.854 6 N -0.524 5.524 7 C 0.385 3.615 8 N -0.697 5.697 9 C 0.136 3.864 10 H 0.106 0.894 11 C -0.141 4.141 12 C -0.071 4.071 13 H 0.096 0.904 14 C -0.079 4.079 15 C -0.125 4.125 16 C -0.129 4.129 17 C -0.138 4.138 18 C -0.131 4.131 19 C -0.133 4.133 20 C -0.128 4.128 21 C -0.038 4.038 22 F -0.141 7.141 23 C -0.040 4.040 24 H 0.386 0.614 25 H 0.129 0.871 26 H -0.301 1.301 27 H -0.275 1.275 28 H 0.183 0.817 29 H 0.415 0.585 30 H 0.101 0.899 31 H 0.060 0.940 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.128 0.872 37 H 0.078 0.922 38 H 0.105 0.895 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.083 1.307 0.615 3.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.178 4.178 3 Si 0.671 3.329 4 C -0.207 4.207 5 C -0.011 4.011 6 N -0.241 5.241 7 C 0.146 3.854 8 N -0.329 5.329 9 C 0.030 3.970 10 H 0.124 0.876 11 C -0.180 4.180 12 C -0.089 4.089 13 H 0.114 0.886 14 C -0.079 4.079 15 C -0.143 4.143 16 C -0.147 4.147 17 C -0.156 4.156 18 C -0.149 4.149 19 C -0.151 4.151 20 C -0.166 4.166 21 C -0.064 4.064 22 F -0.120 7.120 23 C -0.066 4.066 24 H 0.236 0.764 25 H 0.147 0.853 26 H -0.229 1.229 27 H -0.201 1.201 28 H 0.199 0.801 29 H 0.253 0.747 30 H 0.119 0.881 31 H 0.078 0.922 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.151 0.849 35 H 0.150 0.850 36 H 0.146 0.854 37 H 0.096 0.904 38 H 0.123 0.877 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 3.522 2.339 0.848 4.312 hybrid contribution -1.879 -1.518 0.167 2.421 sum 1.644 0.821 1.015 2.099 Atomic orbital electron populations 1.86590 1.18560 1.80365 1.50201 1.25050 0.83304 1.11734 0.97685 0.94112 0.90154 0.71705 0.76910 1.20903 1.05439 0.94141 1.00263 1.22753 0.90999 1.00375 0.86950 1.67351 1.25627 1.07227 1.23910 1.18541 0.90539 0.89157 0.87137 1.44299 1.58649 1.11950 1.18014 1.21809 0.92503 0.95282 0.87423 0.87648 1.23570 1.00106 0.97763 0.96532 1.21572 0.98124 0.99130 0.90090 0.88556 1.19881 0.98452 0.94072 0.95477 1.21239 0.99072 0.98157 0.95819 1.21453 0.99899 0.99226 0.94097 1.21450 0.99688 0.93744 1.00758 1.21422 0.98865 0.98734 0.95879 1.21311 1.00829 0.98848 0.94079 1.23406 0.96640 1.01026 0.95537 1.18140 1.09672 0.79412 0.99177 1.91467 1.93821 1.31713 1.95027 1.21451 0.95297 0.94957 0.94884 0.76430 0.85326 1.22942 1.20142 0.80090 0.74691 0.88084 0.92163 0.84593 0.84628 0.84941 0.85001 0.85379 0.90362 0.87710 0.82738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.30 12.84 -148.98 -1.91 -2.22 16 2 C -0.07 0.21 2.82 71.23 0.20 0.41 16 3 Si 0.77 -3.48 29.91 68.60 2.05 -1.43 16 4 C -0.20 0.26 5.36 -19.76 -0.11 0.15 16 5 C 0.15 -0.14 9.84 84.61 0.83 0.69 16 6 N -0.52 -1.43 9.13 -193.03 -1.76 -3.19 16 7 C 0.38 1.20 7.49 133.09 1.00 2.20 16 8 N -0.70 -0.12 5.41 -321.79 -1.74 -1.86 16 9 C 0.14 -0.23 4.35 45.51 0.20 -0.03 16 10 H 0.11 -0.04 7.41 -2.39 -0.02 -0.06 16 11 C -0.14 0.21 7.26 31.12 0.23 0.44 16 12 C -0.07 0.14 3.85 -11.01 -0.04 0.09 16 13 H 0.10 -0.22 8.09 -2.39 -0.02 -0.24 16 14 C -0.08 -0.08 5.29 -19.86 -0.11 -0.19 16 15 C -0.13 -0.07 8.60 22.27 0.19 0.13 16 16 C -0.13 -0.13 10.05 22.27 0.22 0.09 16 17 C -0.14 -0.23 10.05 22.27 0.22 0.00 16 18 C -0.13 -0.26 10.05 22.27 0.22 -0.03 16 19 C -0.13 -0.26 9.71 22.27 0.22 -0.04 16 20 C -0.13 0.44 7.29 31.12 0.23 0.67 16 21 C -0.04 -0.13 7.35 22.58 0.17 0.03 16 22 F -0.14 -0.71 16.65 44.97 0.75 0.03 16 23 C -0.04 -0.04 9.82 22.48 0.22 0.18 16 24 H 0.39 -1.87 8.70 -74.06 -0.64 -2.51 16 25 H 0.13 -0.62 7.96 -2.39 -0.02 -0.64 16 26 H -0.30 -1.09 7.11 99.48 0.71 -0.38 16 27 H -0.28 0.37 7.01 99.48 0.70 1.07 16 28 H 0.18 -1.03 4.84 -2.91 -0.01 -1.05 16 29 H 0.42 -0.61 8.17 -92.71 -0.76 -1.37 16 30 H 0.10 -0.27 6.33 -2.39 -0.02 -0.29 16 31 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 32 H 0.14 -0.41 6.68 -2.91 -0.02 -0.43 16 33 H 0.14 -0.35 8.06 -2.91 -0.02 -0.37 16 34 H 0.13 -0.22 8.06 -2.91 -0.02 -0.24 16 35 H 0.13 -0.16 8.06 -2.91 -0.02 -0.19 16 36 H 0.13 -0.10 8.05 -2.91 -0.02 -0.12 16 37 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 38 H 0.10 -0.44 7.71 -2.38 -0.02 -0.46 16 39 H 0.15 -0.09 8.06 -2.91 -0.02 -0.12 16 Total: 0.00 -12.51 329.70 1.00 -11.51 By element: Atomic # 1 Polarization: -7.36 SS G_CDS: -0.28 Total: -7.63 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: 3.89 Total: 4.79 kcal Atomic # 7 Polarization: -1.54 SS G_CDS: -3.50 Total: -5.05 kcal Atomic # 8 Polarization: -0.30 SS G_CDS: -1.91 Total: -2.22 kcal Atomic # 9 Polarization: -0.71 SS G_CDS: 0.75 Total: 0.03 kcal Atomic # 14 Polarization: -3.48 SS G_CDS: 2.05 Total: -1.43 kcal Total: -12.51 1.00 -11.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_9705152_17656566.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.060 kcal (2) G-P(sol) polarization free energy of solvation -12.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds