Wall clock time and date at job start Tue Mar 9 2021 13:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86304 * 109.46783 * 2 1 4 4 C 1.50695 * 109.47385 * 240.00083 * 2 1 3 5 5 C 1.37979 * 120.33113 * 119.99687 * 4 2 1 6 6 N 1.32004 * 120.90618 * 180.02562 * 5 4 2 7 7 C 1.32340 * 121.64606 * 0.02562 * 6 5 4 8 8 N 1.39139 * 119.72125 * 179.97438 * 7 6 5 9 9 C 1.46500 * 119.99926 * 359.97438 * 8 7 6 10 10 H 1.09004 * 112.85080 * 336.19727 * 9 8 7 11 11 C 1.53779 * 113.61979 * 107.50762 * 9 8 7 12 12 C 1.53774 * 87.08154 * 89.11374 * 11 9 8 13 13 H 1.08997 * 113.69339 * 270.87567 * 12 11 9 14 14 C 1.50702 * 113.61353 * 139.98641 * 12 11 9 15 15 C 1.38229 * 119.99089 * 322.75985 * 14 12 11 16 16 C 1.38259 * 120.02466 * 180.25764 * 15 14 12 17 17 C 1.38202 * 120.01288 * 359.48305 * 16 15 14 18 18 C 1.38365 * 119.98427 * 0.26295 * 17 16 15 19 19 Cl 1.73606 * 120.00959 * 179.97438 * 18 17 16 20 20 C 1.38229 * 119.99690 * 142.50490 * 14 12 11 21 21 C 1.53777 * 87.08015 * 25.43634 * 12 11 9 22 22 C 1.39347 * 120.56139 * 0.25018 * 7 6 5 23 23 F 1.35098 * 120.47030 * 179.72459 * 22 7 6 24 24 C 1.38447 * 119.05417 * 359.49841 * 22 7 6 25 25 H 0.96698 * 114.00701 * 299.99708 * 1 2 3 26 26 H 1.09000 * 109.46880 * 120.00098 * 2 1 3 27 27 H 1.48501 * 109.99634 * 178.68069 * 3 2 1 28 28 H 1.48501 * 109.99986 * 299.99565 * 3 2 1 29 29 H 1.07999 * 119.54710 * 0.04886 * 5 4 2 30 30 H 0.97000 * 120.00228 * 180.02562 * 8 7 6 31 31 H 1.09002 * 113.60946 * 334.56844 * 11 9 8 32 32 H 1.08995 * 113.61984 * 203.66851 * 11 9 8 33 33 H 1.07997 * 119.98404 * 0.02562 * 15 14 12 34 34 H 1.08002 * 119.99550 * 179.76936 * 16 15 14 35 35 H 1.07999 * 120.00653 * 180.27788 * 17 16 15 36 36 H 1.08002 * 120.00552 * 359.97438 * 20 14 12 37 37 H 1.09006 * 113.61115 * 89.11551 * 21 12 11 38 38 H 1.09005 * 113.61642 * 220.01332 * 21 12 11 39 39 H 1.08001 * 120.75257 * 180.24289 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 2.7250 -0.0463 -2.1431 6 7 3.1709 -0.6574 -3.2249 7 6 2.8776 -1.9227 -3.4784 8 7 3.3687 -2.5271 -4.6314 9 6 4.2063 -1.7629 -5.5591 10 1 4.0460 -0.6872 -5.4862 11 6 5.6889 -2.1700 -5.5288 12 6 5.3449 -3.2076 -6.6104 13 1 5.0330 -4.1718 -6.2089 14 6 6.3960 -3.3328 -7.6830 15 6 7.0678 -2.2091 -8.1266 16 6 8.0285 -2.3223 -9.1144 17 6 8.3253 -3.5607 -9.6513 18 6 7.6569 -4.6866 -9.2039 19 17 8.0288 -6.2425 -9.8783 20 6 6.6920 -4.5719 -8.2193 21 6 4.1711 -2.2944 -7.0017 22 6 2.0763 -2.6533 -2.6032 23 9 1.7734 -3.9433 -2.8666 24 6 1.5988 -2.0397 -1.4576 25 1 -0.3934 0.4416 0.7650 26 1 1.7923 -0.5139 0.8900 27 1 3.5345 1.7703 0.0321 28 1 1.5614 2.4679 -1.2086 29 1 2.9853 0.9874 -1.9699 30 1 3.1560 -3.4542 -4.8214 31 1 6.0009 -2.6125 -4.5828 32 1 6.3640 -1.3869 -5.8740 33 1 6.8394 -1.2418 -7.7041 34 1 8.5504 -1.4435 -9.4633 35 1 9.0789 -3.6497 -10.4197 36 1 6.1703 -5.4505 -7.8694 37 1 4.4312 -1.5453 -7.7496 38 1 3.2577 -2.8374 -7.2448 39 1 0.9788 -2.5813 -0.7586 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_9705208_17656566.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:50:29 Heat of formation + Delta-G solvation = 23.434801 kcal Electronic energy + Delta-G solvation = -25091.819921 eV Core-core repulsion = 21135.505411 eV Total energy + Delta-G solvation = -3956.314511 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.083 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.06763 -41.74697 -41.09748 -39.42455 -37.84023 -37.42505 -35.60528 -33.39738 -32.39681 -31.74985 -30.92137 -26.92829 -26.74827 -26.11206 -24.93144 -23.74183 -22.95629 -22.56189 -20.29855 -19.60626 -18.60216 -18.31743 -18.08062 -18.03093 -17.04589 -16.81754 -16.68535 -16.36589 -16.15925 -15.63663 -15.46537 -15.11585 -15.06015 -14.80716 -14.66942 -14.45145 -14.38768 -14.04576 -13.90013 -13.73493 -13.51894 -12.92762 -12.68938 -12.58079 -12.48283 -12.28985 -12.09430 -11.90186 -11.74178 -11.34566 -11.19234 -10.90104 -10.81961 -10.24473 -9.90687 -9.66066 -8.88050 -4.91033 -0.26189 -0.01461 0.11587 0.23388 1.10074 1.32478 1.69616 1.81949 1.99712 2.36596 2.55475 2.88905 3.05997 3.32938 3.41033 3.56689 3.60763 3.64847 3.73426 3.82740 3.90924 4.02391 4.08390 4.09779 4.23953 4.30290 4.37365 4.40023 4.58795 4.58969 4.66736 4.71565 4.77911 4.87550 4.90251 4.94922 4.97261 5.08136 5.21473 5.31600 5.35052 5.52301 5.79910 5.88493 6.06221 6.80564 6.94753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.566 6.566 2 C -0.066 4.066 3 Si 0.772 3.228 4 C -0.170 4.170 5 C 0.127 3.873 6 N -0.526 5.526 7 C 0.382 3.618 8 N -0.695 5.695 9 C 0.130 3.870 10 H 0.099 0.901 11 C -0.139 4.139 12 C -0.069 4.069 13 H 0.100 0.900 14 C -0.061 4.061 15 C -0.115 4.115 16 C -0.105 4.105 17 C -0.126 4.126 18 C -0.048 4.048 19 Cl -0.081 7.081 20 C -0.120 4.120 21 C -0.127 4.127 22 C -0.030 4.030 23 F -0.135 7.135 24 C -0.037 4.037 25 H 0.405 0.595 26 H 0.100 0.900 27 H -0.282 1.282 28 H -0.293 1.293 29 H 0.158 0.842 30 H 0.417 0.583 31 H 0.063 0.937 32 H 0.106 0.894 33 H 0.148 0.852 34 H 0.154 0.846 35 H 0.140 0.860 36 H 0.135 0.865 37 H 0.109 0.891 38 H 0.079 0.921 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.834 4.290 4.427 6.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.376 6.376 2 C -0.176 4.176 3 Si 0.678 3.322 4 C -0.175 4.175 5 C -0.029 4.029 6 N -0.243 5.243 7 C 0.143 3.857 8 N -0.328 5.328 9 C 0.025 3.975 10 H 0.117 0.883 11 C -0.178 4.178 12 C -0.087 4.087 13 H 0.118 0.882 14 C -0.061 4.061 15 C -0.133 4.133 16 C -0.123 4.123 17 C -0.145 4.145 18 C -0.074 4.074 19 Cl -0.052 7.052 20 C -0.139 4.139 21 C -0.165 4.165 22 C -0.057 4.057 23 F -0.114 7.114 24 C -0.063 4.063 25 H 0.257 0.743 26 H 0.118 0.882 27 H -0.209 1.209 28 H -0.221 1.221 29 H 0.175 0.825 30 H 0.256 0.744 31 H 0.081 0.919 32 H 0.124 0.876 33 H 0.166 0.834 34 H 0.172 0.828 35 H 0.158 0.842 36 H 0.153 0.847 37 H 0.127 0.873 38 H 0.097 0.903 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 0.381 4.927 2.673 5.618 hybrid contribution -0.422 -2.069 -0.030 2.112 sum -0.041 2.858 2.643 3.893 Atomic orbital electron populations 1.86434 1.17126 1.82471 1.51547 1.24618 0.85957 1.10874 0.96151 0.94130 0.77632 0.75266 0.85217 1.20278 1.03060 0.94550 0.99648 1.22350 0.93260 0.99003 0.88295 1.67246 1.27183 1.07954 1.21907 1.18517 0.90340 0.88987 0.87818 1.44266 1.53999 1.14626 1.19925 1.21843 0.90139 0.96747 0.88797 0.88251 1.23585 0.96820 0.98887 0.98463 1.21578 0.94010 0.99282 0.93856 0.88165 1.19775 0.97075 0.92321 0.96948 1.21406 0.95767 0.99297 0.96801 1.21440 0.97499 0.97394 0.95991 1.21320 1.00422 0.91538 1.01204 1.21130 1.00277 0.86932 0.99074 1.98382 1.93960 1.28210 1.84669 1.21107 0.97509 0.98823 0.96433 1.23428 0.98163 0.99282 0.95648 1.18119 1.07189 0.81088 0.99269 1.91480 1.92133 1.33827 1.93975 1.21491 0.95715 0.94420 0.94685 0.74298 0.88213 1.20901 1.22101 0.82513 0.74422 0.91860 0.87591 0.83391 0.82826 0.84188 0.84742 0.87294 0.90269 0.81718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 1.48 12.75 -148.98 -1.90 -0.42 16 2 C -0.07 0.20 2.83 71.23 0.20 0.40 16 3 Si 0.77 -3.47 29.82 68.60 2.05 -1.43 16 4 C -0.17 -0.58 5.43 -19.77 -0.11 -0.69 16 5 C 0.13 0.73 9.84 84.61 0.83 1.56 16 6 N -0.53 -3.99 9.13 -193.04 -1.76 -5.75 16 7 C 0.38 2.33 7.49 133.09 1.00 3.33 16 8 N -0.70 -1.20 5.41 -321.79 -1.74 -2.94 16 9 C 0.13 -0.09 4.35 45.52 0.20 0.11 16 10 H 0.10 0.16 7.41 -2.39 -0.02 0.15 16 11 C -0.14 0.28 7.25 31.12 0.23 0.51 16 12 C -0.07 0.19 3.86 -11.02 -0.04 0.15 16 13 H 0.10 -0.31 8.09 -2.39 -0.02 -0.33 16 14 C -0.06 0.03 5.29 -19.87 -0.11 -0.08 16 15 C -0.11 0.23 8.62 22.27 0.19 0.43 16 16 C -0.11 0.17 10.05 22.27 0.22 0.39 16 17 C -0.13 -0.17 9.83 22.29 0.22 0.05 16 18 C -0.05 -0.17 6.32 22.32 0.14 -0.03 16 19 Cl -0.08 -0.39 28.96 -2.72 -0.08 -0.47 16 20 C -0.12 -0.25 9.49 22.29 0.21 -0.04 16 21 C -0.13 0.46 7.29 31.12 0.23 0.69 16 22 C -0.03 -0.18 7.35 22.59 0.17 -0.01 16 23 F -0.14 -0.82 16.65 44.97 0.75 -0.07 16 24 C -0.04 -0.14 9.75 22.48 0.22 0.07 16 25 H 0.41 -5.32 8.74 -74.06 -0.65 -5.97 16 26 H 0.10 -0.75 7.96 -2.39 -0.02 -0.77 16 27 H -0.28 -0.15 7.11 99.48 0.71 0.56 16 28 H -0.29 -0.92 7.11 99.48 0.71 -0.21 16 29 H 0.16 0.58 4.88 -2.91 -0.01 0.56 16 30 H 0.42 -0.26 8.17 -92.71 -0.76 -1.01 16 31 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 32 H 0.11 -0.42 6.30 -2.39 -0.02 -0.44 16 33 H 0.15 -0.90 6.64 -2.91 -0.02 -0.92 16 34 H 0.15 -0.96 8.06 -2.91 -0.02 -0.98 16 35 H 0.14 -0.13 8.06 -2.91 -0.02 -0.15 16 36 H 0.13 0.08 8.05 -2.91 -0.02 0.06 16 37 H 0.11 -0.55 7.73 -2.38 -0.02 -0.57 16 38 H 0.08 -0.27 8.14 -2.38 -0.02 -0.29 16 39 H 0.17 0.07 8.06 -2.91 -0.02 0.05 16 Total: 0.00 -15.35 346.40 0.86 -14.49 By element: Atomic # 1 Polarization: -9.99 SS G_CDS: -0.25 Total: -10.24 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: 3.80 Total: 6.82 kcal Atomic # 7 Polarization: -5.19 SS G_CDS: -3.50 Total: -8.69 kcal Atomic # 8 Polarization: 1.48 SS G_CDS: -1.90 Total: -0.42 kcal Atomic # 9 Polarization: -0.82 SS G_CDS: 0.75 Total: -0.07 kcal Atomic # 14 Polarization: -3.47 SS G_CDS: 2.05 Total: -1.43 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -0.08 Total: -0.47 kcal Total: -15.35 0.86 -14.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_9705208_17656566.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.922 kcal (2) G-P(sol) polarization free energy of solvation -15.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds