Wall clock time and date at job start Tue Mar 9 2021 13:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86302 * 109.47395 * 2 1 4 4 C 1.50699 * 109.46810 * 239.99655 * 2 1 3 5 5 C 1.38026 * 120.33099 * 120.00402 * 4 2 1 6 6 N 1.31975 * 120.85554 * 179.97438 * 5 4 2 7 7 C 1.32393 * 121.62092 * 0.02562 * 6 5 4 8 8 N 1.39006 * 119.70573 * 179.97438 * 7 6 5 9 9 C 1.46503 * 120.00184 * 179.97438 * 8 7 6 10 10 H 1.08998 * 112.84685 * 23.81140 * 9 8 7 11 11 C 1.53787 * 113.61260 * 154.99993 * 9 8 7 12 12 C 1.53780 * 87.07609 * 89.20438 * 11 9 8 13 13 H 1.08998 * 113.61197 * 270.79655 * 12 11 9 14 14 C 1.50697 * 113.61342 * 139.98186 * 12 11 9 15 15 C 1.38225 * 119.98880 * 299.97576 * 14 12 11 16 16 C 1.38263 * 120.05445 * 179.97438 * 15 14 12 17 17 C 1.38176 * 120.02823 * 359.97438 * 16 15 14 18 18 C 1.38485 * 119.97177 * 0.02562 * 17 16 15 19 19 F 1.35093 * 120.02684 * 180.25338 * 18 17 16 20 20 C 1.38218 * 119.98911 * 119.99444 * 14 12 11 21 21 C 1.53775 * 113.69204 * 252.53912 * 9 8 7 22 22 C 1.39139 * 120.59364 * 0.27521 * 7 6 5 23 23 C 1.38305 * 119.08964 * 359.43454 * 22 7 6 24 24 H 0.96700 * 113.99826 * 59.99908 * 1 2 3 25 25 H 1.09001 * 109.46714 * 120.00135 * 2 1 3 26 26 H 1.48498 * 109.99676 * 298.67945 * 3 2 1 27 27 H 1.48496 * 109.99662 * 60.00045 * 3 2 1 28 28 H 1.07994 * 119.57169 * 359.97438 * 5 4 2 29 29 H 0.96996 * 120.00156 * 0.02562 * 8 7 6 30 30 H 1.08991 * 113.61463 * 334.65576 * 11 9 8 31 31 H 1.09004 * 113.68863 * 203.76258 * 11 9 8 32 32 H 1.08005 * 119.96945 * 359.97438 * 15 14 12 33 33 H 1.08000 * 119.98569 * 179.97438 * 16 15 14 34 34 H 1.08000 * 120.01901 * 180.02562 * 17 16 15 35 35 H 1.08007 * 120.01313 * 0.02750 * 20 14 12 36 36 H 1.09002 * 113.61295 * 156.32921 * 21 9 8 37 37 H 1.09000 * 113.61501 * 25.41866 * 21 9 8 38 38 H 1.07994 * 120.45756 * 179.70270 * 22 7 6 39 39 H 1.08004 * 120.74392 * 180.26457 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 2.7253 -0.0464 -2.1435 6 7 3.1712 -0.6587 -3.2242 7 6 2.8775 -1.9249 -3.4757 8 7 3.3682 -2.5303 -4.6268 9 6 3.0477 -3.9313 -4.9112 10 1 2.1332 -4.2643 -4.4204 11 6 3.1086 -4.2858 -6.4064 12 6 4.5941 -4.6170 -6.1867 13 1 5.2570 -3.7628 -6.3251 14 6 5.0559 -5.8428 -6.9318 15 6 4.4651 -7.0670 -6.6813 16 6 4.8873 -8.1924 -7.3645 17 6 5.9003 -8.0945 -8.2992 18 6 6.4930 -6.8685 -8.5511 19 9 7.4800 -6.7705 -9.4683 20 6 6.0704 -5.7426 -7.8652 21 6 4.2352 -4.8887 -4.7163 22 6 2.0768 -2.6532 -2.6014 23 6 1.5999 -2.0400 -1.4572 24 1 -0.3933 0.4417 -0.7650 25 1 1.7923 -0.5139 0.8900 26 1 1.5880 2.4585 -1.2243 27 1 1.5616 2.4678 1.2085 28 1 2.9849 0.9876 -1.9713 29 1 3.9235 -2.0255 -5.2413 30 1 2.9441 -3.4327 -7.0644 31 1 2.5035 -5.1514 -6.6762 32 1 3.6729 -7.1445 -5.9512 33 1 4.4252 -9.1485 -7.1676 34 1 6.2297 -8.9736 -8.8331 35 1 6.5324 -4.7860 -8.0603 36 1 3.9379 -5.9193 -4.5228 37 1 4.9802 -4.5222 -4.0101 38 1 1.8347 -3.6846 -2.8112 39 1 0.9798 -2.5815 -0.7581 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_9705264_13915762.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:50:37 Heat of formation + Delta-G solvation = 23.442075 kcal Electronic energy + Delta-G solvation = -22873.553365 eV Core-core repulsion = 19277.038962 eV Total energy + Delta-G solvation = -3596.514403 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 301.122 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.82488 -41.76043 -40.99417 -39.21409 -37.94887 -35.41685 -33.42249 -32.36757 -31.54933 -30.79100 -26.95090 -26.92644 -25.86611 -24.77869 -23.84203 -23.10014 -22.35514 -20.32111 -19.14021 -18.52791 -18.22889 -17.49035 -17.35476 -17.13812 -16.53845 -16.52137 -16.32270 -16.19892 -16.08288 -15.36996 -15.27034 -14.91366 -14.66582 -14.29572 -14.23584 -14.02103 -13.89625 -13.71746 -13.29698 -13.16278 -12.91740 -12.81301 -12.45768 -11.99930 -11.95009 -11.87885 -11.44432 -11.14877 -10.75559 -10.53192 -10.37411 -9.98038 -9.66618 -8.74895 -4.95445 0.10123 0.16466 0.22922 0.41045 1.30432 1.60191 1.94873 1.98214 2.48885 2.82006 3.17359 3.24483 3.38300 3.47823 3.52724 3.57756 3.70145 3.76182 3.80871 3.89699 3.96883 4.01483 4.05695 4.12478 4.31308 4.32912 4.36856 4.52046 4.56711 4.61636 4.71841 4.76401 4.80205 4.84798 4.97151 5.01572 5.02181 5.10795 5.27729 5.30448 5.45199 5.51646 5.85801 5.97250 6.41376 6.48343 7.13647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.532 6.532 2 C -0.059 4.059 3 Si 0.678 3.322 4 C -0.233 4.233 5 C 0.157 3.843 6 N -0.539 5.539 7 C 0.410 3.590 8 N -0.705 5.705 9 C 0.129 3.871 10 H 0.101 0.899 11 C -0.135 4.135 12 C -0.074 4.074 13 H 0.101 0.899 14 C -0.042 4.042 15 C -0.129 4.129 16 C -0.087 4.087 17 C -0.158 4.158 18 C 0.102 3.898 19 F -0.139 7.139 20 C -0.151 4.151 21 C -0.148 4.148 22 C -0.238 4.238 23 C -0.006 4.006 24 H 0.375 0.625 25 H 0.117 0.883 26 H -0.258 1.258 27 H -0.256 1.256 28 H 0.155 0.845 29 H 0.407 0.593 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.130 0.870 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.135 0.865 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.401 -2.291 0.544 2.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.338 6.338 2 C -0.170 4.170 3 Si 0.579 3.421 4 C -0.238 4.238 5 C -0.001 4.001 6 N -0.256 5.256 7 C 0.175 3.825 8 N -0.336 5.336 9 C 0.022 3.978 10 H 0.118 0.882 11 C -0.174 4.174 12 C -0.092 4.092 13 H 0.119 0.881 14 C -0.043 4.043 15 C -0.147 4.147 16 C -0.105 4.105 17 C -0.177 4.177 18 C 0.082 3.918 19 F -0.118 7.118 20 C -0.170 4.170 21 C -0.187 4.187 22 C -0.262 4.262 23 C -0.032 4.032 24 H 0.223 0.777 25 H 0.135 0.865 26 H -0.183 1.183 27 H -0.181 1.181 28 H 0.172 0.828 29 H 0.243 0.757 30 H 0.098 0.902 31 H 0.119 0.881 32 H 0.148 0.852 33 H 0.152 0.848 34 H 0.153 0.847 35 H 0.152 0.848 36 H 0.116 0.884 37 H 0.097 0.903 38 H 0.153 0.847 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.025 -1.492 0.443 1.556 hybrid contribution -1.027 -0.503 -0.507 1.251 sum -1.052 -1.994 -0.064 2.256 Atomic orbital electron populations 1.86591 1.17963 1.79919 1.49338 1.24754 0.83682 1.10542 0.98004 0.95166 0.91710 0.74723 0.80503 1.20940 1.05964 0.96534 1.00391 1.22214 0.91413 0.98676 0.87787 1.67144 1.27359 1.09039 1.22070 1.18363 0.89055 0.88422 0.86692 1.44154 1.55936 1.10903 1.22647 1.21860 0.98384 0.80711 0.96833 0.88156 1.23446 0.95485 1.02727 0.95697 1.21601 0.96801 0.95560 0.95276 0.88122 1.19525 0.94580 0.94870 0.95289 1.21081 1.00918 0.91954 1.00740 1.21040 0.95611 0.99105 0.94703 1.21220 0.98725 0.96751 1.01032 1.17744 0.88746 0.94835 0.90428 1.91523 1.59278 1.96953 1.64004 1.21073 0.99410 0.98190 0.98335 1.23679 0.98785 1.00464 0.95804 1.21502 1.05270 1.02052 0.97422 1.21203 0.93857 0.93186 0.94906 0.77720 0.86549 1.18311 1.18062 0.82791 0.75699 0.90199 0.88082 0.85172 0.84813 0.84680 0.84780 0.88430 0.90300 0.84746 0.84615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.53 12.78 -35.23 -0.45 -0.98 16 2 C -0.06 0.02 2.84 36.00 0.10 0.13 16 3 Si 0.68 -0.67 29.82 -169.99 -5.07 -5.74 16 4 C -0.23 -0.06 5.40 -104.46 -0.56 -0.63 16 5 C 0.16 0.14 9.84 -17.57 -0.17 -0.03 16 6 N -0.54 -1.26 10.39 -12.44 -0.13 -1.39 16 7 C 0.41 0.43 7.65 -155.02 -1.19 -0.75 16 8 N -0.70 0.73 5.44 -53.14 -0.29 0.44 16 9 C 0.13 -0.37 4.11 -67.12 -0.28 -0.65 16 10 H 0.10 -0.35 6.09 -51.93 -0.32 -0.67 16 11 C -0.14 0.44 7.29 -25.92 -0.19 0.25 16 12 C -0.07 0.19 3.86 -90.96 -0.35 -0.16 16 13 H 0.10 -0.26 8.09 -51.93 -0.42 -0.68 16 14 C -0.04 0.05 5.29 -104.64 -0.55 -0.51 16 15 C -0.13 0.22 8.61 -39.58 -0.34 -0.12 16 16 C -0.09 0.11 10.04 -39.60 -0.40 -0.29 16 17 C -0.16 -0.03 10.03 -39.51 -0.40 -0.43 16 18 C 0.10 0.16 7.30 -39.41 -0.29 -0.13 16 19 F -0.14 -0.43 17.27 2.25 0.04 -0.40 16 20 C -0.15 -0.05 9.69 -39.51 -0.38 -0.43 16 21 C -0.15 0.44 7.25 -25.92 -0.19 0.26 16 22 C -0.24 -0.01 9.29 -39.22 -0.36 -0.37 16 23 C -0.01 0.00 9.77 -39.32 -0.38 -0.38 16 24 H 0.38 -0.61 8.70 45.56 0.40 -0.21 16 25 H 0.12 -0.14 7.96 -51.93 -0.41 -0.55 16 26 H -0.26 -0.27 7.11 56.52 0.40 0.13 16 27 H -0.26 -0.59 7.11 56.52 0.40 -0.19 16 28 H 0.16 -0.15 4.88 -52.49 -0.26 -0.41 16 29 H 0.41 -0.53 8.83 -40.82 -0.36 -0.89 16 30 H 0.08 -0.23 8.14 -51.93 -0.42 -0.65 16 31 H 0.10 -0.38 7.72 -51.93 -0.40 -0.78 16 32 H 0.13 -0.49 6.65 -52.48 -0.35 -0.84 16 33 H 0.13 -0.44 8.06 -52.49 -0.42 -0.86 16 34 H 0.14 -0.14 8.06 -52.49 -0.42 -0.56 16 35 H 0.13 -0.09 8.05 -52.48 -0.42 -0.52 16 36 H 0.10 -0.38 6.31 -51.93 -0.33 -0.71 16 37 H 0.08 -0.14 8.14 -51.93 -0.42 -0.56 16 38 H 0.13 -0.25 6.03 -52.49 -0.32 -0.57 16 39 H 0.14 -0.12 8.06 -52.48 -0.42 -0.55 16 LS Contribution 327.94 15.07 4.94 4.94 Total: 0.00 -6.04 327.94 -11.39 -17.43 By element: Atomic # 1 Polarization: -5.55 SS G_CDS: -4.50 Total: -10.05 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -5.93 Total: -4.26 kcal Atomic # 7 Polarization: -0.53 SS G_CDS: -0.42 Total: -0.95 kcal Atomic # 8 Polarization: -0.53 SS G_CDS: -0.45 Total: -0.98 kcal Atomic # 9 Polarization: -0.43 SS G_CDS: 0.04 Total: -0.40 kcal Atomic # 14 Polarization: -0.67 SS G_CDS: -5.07 Total: -5.74 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -6.04 -11.39 -17.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_9705264_13915762.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.867 kcal (2) G-P(sol) polarization free energy of solvation -6.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds