Wall clock time and date at job start Tue Mar 9 2021 13:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86302 * 109.47395 * 2 1 4 4 C 1.50699 * 109.46810 * 239.99655 * 2 1 3 5 5 C 1.38026 * 120.33099 * 120.00402 * 4 2 1 6 6 N 1.31975 * 120.85554 * 179.97438 * 5 4 2 7 7 C 1.32393 * 121.62092 * 0.02562 * 6 5 4 8 8 N 1.39006 * 119.70573 * 179.97438 * 7 6 5 9 9 C 1.46503 * 120.00184 * 179.97438 * 8 7 6 10 10 H 1.08998 * 112.84685 * 23.81140 * 9 8 7 11 11 C 1.53787 * 113.61260 * 154.99993 * 9 8 7 12 12 C 1.53780 * 87.07609 * 89.20438 * 11 9 8 13 13 H 1.08998 * 113.61197 * 270.79655 * 12 11 9 14 14 C 1.50697 * 113.61342 * 139.98186 * 12 11 9 15 15 C 1.38225 * 119.98880 * 299.97576 * 14 12 11 16 16 C 1.38263 * 120.05445 * 179.97438 * 15 14 12 17 17 C 1.38176 * 120.02823 * 359.97438 * 16 15 14 18 18 C 1.38485 * 119.97177 * 0.02562 * 17 16 15 19 19 F 1.35093 * 120.02684 * 180.25338 * 18 17 16 20 20 C 1.38218 * 119.98911 * 119.99444 * 14 12 11 21 21 C 1.53775 * 113.69204 * 252.53912 * 9 8 7 22 22 C 1.39139 * 120.59364 * 0.27521 * 7 6 5 23 23 C 1.38305 * 119.08964 * 359.43454 * 22 7 6 24 24 H 0.96700 * 113.99826 * 59.99908 * 1 2 3 25 25 H 1.09001 * 109.46714 * 120.00135 * 2 1 3 26 26 H 1.48498 * 109.99676 * 298.67945 * 3 2 1 27 27 H 1.48496 * 109.99662 * 60.00045 * 3 2 1 28 28 H 1.07994 * 119.57169 * 359.97438 * 5 4 2 29 29 H 0.96996 * 120.00156 * 0.02562 * 8 7 6 30 30 H 1.08991 * 113.61463 * 334.65576 * 11 9 8 31 31 H 1.09004 * 113.68863 * 203.76258 * 11 9 8 32 32 H 1.08005 * 119.96945 * 359.97438 * 15 14 12 33 33 H 1.08000 * 119.98569 * 179.97438 * 16 15 14 34 34 H 1.08000 * 120.01901 * 180.02562 * 17 16 15 35 35 H 1.08007 * 120.01313 * 0.02750 * 20 14 12 36 36 H 1.09002 * 113.61295 * 156.32921 * 21 9 8 37 37 H 1.09000 * 113.61501 * 25.41866 * 21 9 8 38 38 H 1.07994 * 120.45756 * 179.70270 * 22 7 6 39 39 H 1.08004 * 120.74392 * 180.26457 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 2.7253 -0.0464 -2.1435 6 7 3.1712 -0.6587 -3.2242 7 6 2.8775 -1.9249 -3.4757 8 7 3.3682 -2.5303 -4.6268 9 6 3.0477 -3.9313 -4.9112 10 1 2.1332 -4.2643 -4.4204 11 6 3.1086 -4.2858 -6.4064 12 6 4.5941 -4.6170 -6.1867 13 1 5.2570 -3.7628 -6.3251 14 6 5.0559 -5.8428 -6.9318 15 6 4.4651 -7.0670 -6.6813 16 6 4.8873 -8.1924 -7.3645 17 6 5.9003 -8.0945 -8.2992 18 6 6.4930 -6.8685 -8.5511 19 9 7.4800 -6.7705 -9.4683 20 6 6.0704 -5.7426 -7.8652 21 6 4.2352 -4.8887 -4.7163 22 6 2.0768 -2.6532 -2.6014 23 6 1.5999 -2.0400 -1.4572 24 1 -0.3933 0.4417 -0.7650 25 1 1.7923 -0.5139 0.8900 26 1 1.5880 2.4585 -1.2243 27 1 1.5616 2.4678 1.2085 28 1 2.9849 0.9876 -1.9713 29 1 3.9235 -2.0255 -5.2413 30 1 2.9441 -3.4327 -7.0644 31 1 2.5035 -5.1514 -6.6762 32 1 3.6729 -7.1445 -5.9512 33 1 4.4252 -9.1485 -7.1676 34 1 6.2297 -8.9736 -8.8331 35 1 6.5324 -4.7860 -8.0603 36 1 3.9379 -5.9193 -4.5228 37 1 4.9802 -4.5222 -4.0101 38 1 1.8347 -3.6846 -2.8112 39 1 0.9798 -2.5815 -0.7581 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_9705264_13915762.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:50:36 Heat of formation + Delta-G solvation = 29.069101 kcal Electronic energy + Delta-G solvation = -22873.309359 eV Core-core repulsion = 19277.038962 eV Total energy + Delta-G solvation = -3596.270397 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 301.122 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.94710 -41.65739 -40.90865 -39.10499 -37.94500 -35.33904 -33.41079 -32.28363 -31.48822 -30.72576 -26.86015 -26.68087 -25.77403 -24.74672 -23.77042 -23.03934 -22.28783 -20.16977 -19.04986 -18.52085 -18.17799 -17.42042 -17.35129 -17.06160 -16.65230 -16.47888 -16.27438 -16.14686 -15.96865 -15.30196 -15.18326 -14.84193 -14.56973 -14.34199 -14.15355 -13.98161 -13.83990 -13.46802 -13.29733 -13.06245 -12.77177 -12.69764 -12.44849 -12.05856 -11.83088 -11.72584 -11.24292 -11.05106 -10.73283 -10.52398 -10.37936 -9.91163 -9.61533 -8.68109 -4.90745 0.15629 0.22563 0.24955 0.42337 1.34732 1.61061 1.96954 2.07867 2.57202 2.83286 3.22447 3.45349 3.46096 3.61375 3.66014 3.70980 3.80025 3.87270 3.98087 3.99711 4.09642 4.10663 4.15816 4.26454 4.38844 4.42522 4.54797 4.65979 4.78741 4.80535 4.83277 4.92732 4.95718 5.04146 5.06802 5.11917 5.17059 5.20941 5.35429 5.38657 5.54763 5.61304 5.93384 6.08053 6.51002 6.54965 7.16248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.061 4.061 3 Si 0.753 3.247 4 C -0.234 4.234 5 C 0.145 3.855 6 N -0.567 5.567 7 C 0.397 3.603 8 N -0.703 5.703 9 C 0.129 3.871 10 H 0.113 0.887 11 C -0.128 4.128 12 C -0.074 4.074 13 H 0.096 0.904 14 C -0.044 4.044 15 C -0.125 4.125 16 C -0.088 4.088 17 C -0.170 4.170 18 C 0.071 3.929 19 F -0.156 7.156 20 C -0.165 4.165 21 C -0.141 4.141 22 C -0.239 4.239 23 C -0.012 4.012 24 H 0.385 0.615 25 H 0.126 0.874 26 H -0.286 1.286 27 H -0.301 1.301 28 H 0.165 0.835 29 H 0.405 0.595 30 H 0.075 0.925 31 H 0.113 0.887 32 H 0.157 0.843 33 H 0.158 0.842 34 H 0.141 0.859 35 H 0.135 0.865 36 H 0.113 0.887 37 H 0.066 0.934 38 H 0.154 0.846 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.394 -3.407 1.190 3.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.171 4.171 3 Si 0.660 3.340 4 C -0.239 4.239 5 C -0.012 4.012 6 N -0.285 5.285 7 C 0.161 3.839 8 N -0.334 5.334 9 C 0.023 3.977 10 H 0.130 0.870 11 C -0.166 4.166 12 C -0.093 4.093 13 H 0.114 0.886 14 C -0.044 4.044 15 C -0.143 4.143 16 C -0.106 4.106 17 C -0.189 4.189 18 C 0.052 3.948 19 F -0.135 7.135 20 C -0.184 4.184 21 C -0.180 4.180 22 C -0.263 4.263 23 C -0.038 4.038 24 H 0.234 0.766 25 H 0.144 0.856 26 H -0.212 1.212 27 H -0.229 1.229 28 H 0.182 0.818 29 H 0.242 0.758 30 H 0.093 0.907 31 H 0.131 0.869 32 H 0.175 0.825 33 H 0.175 0.825 34 H 0.159 0.841 35 H 0.153 0.847 36 H 0.131 0.869 37 H 0.085 0.915 38 H 0.172 0.828 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.007 -2.630 1.072 3.013 hybrid contribution -0.750 -0.143 -0.703 1.038 sum -1.757 -2.773 0.369 3.304 Atomic orbital electron populations 1.86561 1.18687 1.80249 1.50145 1.24867 0.83144 1.10908 0.98225 0.94259 0.90579 0.72768 0.76432 1.20965 1.05857 0.96754 1.00361 1.22429 0.91719 0.99273 0.87793 1.67138 1.28426 1.10006 1.22899 1.18626 0.89442 0.88355 0.87452 1.44277 1.55546 1.11575 1.22037 1.21961 0.98843 0.79730 0.97162 0.86969 1.23428 0.94859 1.02961 0.95327 1.21607 0.97240 0.94844 0.95570 0.88617 1.19726 0.94014 0.95866 0.94791 1.21424 1.00957 0.91318 1.00616 1.21374 0.94909 1.00406 0.93877 1.21432 0.99263 0.96455 1.01707 1.18089 0.89428 0.96043 0.91244 1.91469 1.60148 1.97101 1.64794 1.21228 1.00185 0.98009 0.98948 1.23664 0.98275 1.01177 0.94868 1.21716 1.04712 1.02884 0.97033 1.21415 0.93913 0.93246 0.95234 0.76643 0.85611 1.21226 1.22896 0.81814 0.75843 0.90677 0.86877 0.82524 0.82451 0.84095 0.84740 0.86881 0.91532 0.82809 0.83555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.96 12.78 -148.98 -1.90 -2.87 16 2 C -0.06 0.07 2.84 71.24 0.20 0.27 16 3 Si 0.75 -1.19 29.82 68.60 2.05 0.85 16 4 C -0.23 -0.06 5.40 -19.76 -0.11 -0.17 16 5 C 0.14 0.29 9.84 84.62 0.83 1.13 16 6 N -0.57 -2.84 10.39 -193.26 -2.01 -4.85 16 7 C 0.40 0.74 7.65 133.07 1.02 1.76 16 8 N -0.70 1.67 5.44 -322.04 -1.75 -0.08 16 9 C 0.13 -0.92 4.11 45.52 0.19 -0.73 16 10 H 0.11 -1.04 6.09 -2.39 -0.01 -1.05 16 11 C -0.13 0.99 7.29 31.12 0.23 1.22 16 12 C -0.07 0.43 3.86 -11.02 -0.04 0.39 16 13 H 0.10 -0.46 8.09 -2.39 -0.02 -0.48 16 14 C -0.04 0.11 5.29 -19.87 -0.11 0.01 16 15 C -0.13 0.63 8.61 22.27 0.19 0.82 16 16 C -0.09 0.32 10.04 22.26 0.22 0.54 16 17 C -0.17 -0.14 10.03 22.31 0.22 0.09 16 18 C 0.07 0.32 7.30 22.38 0.16 0.49 16 19 F -0.16 -1.31 17.27 44.97 0.78 -0.54 16 20 C -0.16 -0.28 9.69 22.31 0.22 -0.07 16 21 C -0.14 1.04 7.25 31.12 0.23 1.26 16 22 C -0.24 0.21 9.29 22.50 0.21 0.42 16 23 C -0.01 0.01 9.77 22.44 0.22 0.22 16 24 H 0.38 -1.24 8.70 -74.06 -0.64 -1.88 16 25 H 0.13 -0.38 7.96 -2.39 -0.02 -0.40 16 26 H -0.29 -0.80 7.11 99.48 0.71 -0.09 16 27 H -0.30 -1.80 7.11 99.48 0.71 -1.09 16 28 H 0.17 -0.26 4.88 -2.91 -0.01 -0.27 16 29 H 0.41 -0.92 8.83 -92.71 -0.82 -1.74 16 30 H 0.07 -0.47 8.14 -2.39 -0.02 -0.49 16 31 H 0.11 -1.11 7.72 -2.39 -0.02 -1.13 16 32 H 0.16 -1.67 6.65 -2.91 -0.02 -1.68 16 33 H 0.16 -1.38 8.06 -2.91 -0.02 -1.40 16 34 H 0.14 -0.20 8.06 -2.91 -0.02 -0.23 16 35 H 0.13 0.05 8.05 -2.91 -0.02 0.03 16 36 H 0.11 -1.17 6.31 -2.39 -0.02 -1.19 16 37 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 38 H 0.15 -0.87 6.03 -2.91 -0.02 -0.89 16 39 H 0.15 -0.44 8.06 -2.91 -0.02 -0.46 16 Total: 0.00 -15.32 327.94 0.72 -14.59 By element: Atomic # 1 Polarization: -14.43 SS G_CDS: -0.32 Total: -14.75 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: 3.89 Total: 7.64 kcal Atomic # 7 Polarization: -1.17 SS G_CDS: -3.76 Total: -4.93 kcal Atomic # 8 Polarization: -0.96 SS G_CDS: -1.90 Total: -2.87 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.78 Total: -0.54 kcal Atomic # 14 Polarization: -1.19 SS G_CDS: 2.05 Total: 0.85 kcal Total: -15.32 0.72 -14.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_9705264_13915762.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.660 kcal (2) G-P(sol) polarization free energy of solvation -15.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds