Wall clock time and date at job start Tue Mar 9 2021 13:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86297 * 109.47245 * 2 1 4 4 C 1.50694 * 109.46596 * 120.00251 * 2 1 3 5 5 C 1.38605 * 120.72326 * 65.00341 * 4 2 1 6 6 N 1.32275 * 119.19757 * 180.02562 * 5 4 2 7 7 C 1.32498 * 120.74168 * 359.97438 * 6 5 4 8 8 N 1.38405 * 119.21601 * 180.02562 * 7 6 5 9 9 C 1.46496 * 119.99592 * 180.02562 * 8 7 6 10 10 H 1.09000 * 112.91246 * 23.74625 * 9 8 7 11 11 C 1.53786 * 113.61518 * 154.99866 * 9 8 7 12 12 C 1.53781 * 87.17350 * 89.15486 * 11 9 8 13 13 H 1.08996 * 113.61580 * 270.76247 * 12 11 9 14 14 C 1.50703 * 113.61417 * 139.93966 * 12 11 9 15 15 C 1.38217 * 119.99758 * 299.72794 * 14 12 11 16 16 C 1.38261 * 119.99216 * 179.78725 * 15 14 12 17 17 C 1.38208 * 120.00494 * 0.44418 * 16 15 14 18 18 C 1.38259 * 119.99961 * 359.80930 * 17 16 15 19 19 C 1.50700 * 120.00107 * 180.02562 * 18 17 16 20 20 F 1.39906 * 109.46909 * 269.97326 * 19 18 17 21 21 F 1.39895 * 109.46992 * 29.97500 * 19 18 17 22 22 F 1.39901 * 109.46993 * 149.97753 * 19 18 17 23 23 C 1.38218 * 119.99883 * 359.97438 * 18 17 16 24 24 C 1.53782 * 87.08260 * 25.39213 * 12 11 9 25 25 N 1.32494 * 121.56264 * 0.28341 * 7 6 5 26 26 C 1.32276 * 120.74155 * 359.43109 * 25 7 6 27 27 H 0.96702 * 114.00330 * 300.00316 * 1 2 3 28 28 H 1.09001 * 109.47008 * 240.00247 * 2 1 3 29 29 H 1.48500 * 110.00211 * 300.00409 * 3 2 1 30 30 H 1.48507 * 109.99609 * 61.31810 * 3 2 1 31 31 H 1.07998 * 120.39981 * 359.97438 * 5 4 2 32 32 H 0.97001 * 120.00290 * 359.97438 * 8 7 6 33 33 H 1.09002 * 113.61357 * 334.56403 * 11 9 8 34 34 H 1.09002 * 113.61608 * 203.74565 * 11 9 8 35 35 H 1.07992 * 120.00140 * 359.97438 * 15 14 12 36 36 H 1.08005 * 119.99407 * 180.27149 * 16 15 14 37 37 H 1.07999 * 119.99976 * 179.83679 * 17 16 15 38 38 H 1.07999 * 120.00045 * 180.02562 * 23 18 17 39 39 H 1.08997 * 113.61668 * 89.11298 * 24 12 11 40 40 H 1.08994 * 113.61387 * 220.02033 * 24 12 11 41 41 H 1.07995 * 120.40089 * 180.29509 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 1.6925 -2.0634 1.4139 6 7 2.1468 -2.6566 2.5055 7 6 2.8230 -1.9724 3.4166 8 7 3.2842 -2.6249 4.5467 9 6 4.0333 -1.8849 5.5652 10 1 3.8224 -0.8156 5.5538 11 6 3.9537 -2.5135 6.9665 12 6 5.1923 -3.3402 6.5827 13 1 4.9524 -4.2900 6.1048 14 6 6.1924 -3.4838 7.7009 15 6 6.7810 -2.3603 8.2501 16 6 7.6952 -2.4919 9.2789 17 6 8.0275 -3.7473 9.7519 18 6 7.4427 -4.8715 9.1989 19 6 7.8045 -6.2403 9.7150 20 9 8.8935 -6.7385 8.9917 21 9 8.1446 -6.1532 11.0692 22 9 6.7113 -7.1000 9.5630 23 6 6.5253 -4.7397 8.1734 24 6 5.5362 -2.2181 5.5890 25 7 3.0638 -0.6773 3.2739 26 6 2.6423 -0.0252 2.2031 27 1 -0.3934 0.4417 0.7650 28 1 1.7924 -0.5138 -0.8900 29 1 1.5615 2.4679 -1.2084 30 1 1.5879 2.4585 1.2243 31 1 1.1416 -2.6263 0.6750 32 1 3.1109 -3.5720 4.6646 33 1 3.0589 -3.1154 7.1249 34 1 4.1352 -1.8044 7.7741 35 1 6.5245 -1.3796 7.8777 36 1 8.1519 -1.6137 9.7111 37 1 8.7436 -3.8502 10.5537 38 1 6.0682 -5.6178 7.7417 39 1 6.1507 -1.4272 6.0190 40 1 5.9189 -2.5816 4.6354 41 1 2.8458 1.0294 2.0902 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_9705320_12175864.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:50:50 Heat of formation + Delta-G solvation = -57.079727 kcal Electronic energy + Delta-G solvation = -29536.171518 eV Core-core repulsion = 24776.293946 eV Total energy + Delta-G solvation = -4759.877572 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 352.114 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -51.24853 -48.77265 -48.72465 -42.16090 -41.25340 -39.45160 -38.08971 -35.59958 -34.72662 -33.02607 -32.54380 -31.49288 -27.19940 -26.97497 -26.63054 -26.12042 -25.49271 -23.44506 -23.29586 -22.48337 -20.46377 -19.64552 -19.58159 -19.42065 -19.04963 -18.40977 -18.06793 -17.34646 -16.69469 -16.56952 -16.32934 -16.14321 -15.97135 -15.67959 -15.64698 -15.50067 -15.48519 -15.18439 -15.00279 -14.88744 -14.78921 -14.61580 -14.44752 -14.25944 -13.99368 -13.77407 -13.48348 -13.31151 -13.15708 -12.87571 -12.40115 -12.25764 -11.98978 -11.90661 -11.83981 -11.71256 -11.26975 -11.12959 -10.67136 -10.20295 -10.04520 -9.80408 -9.10506 -4.89440 -0.08643 0.04897 0.14134 0.23139 1.33127 1.59919 1.61265 1.79171 1.99753 2.43323 2.66518 2.77828 2.94411 3.15140 3.33560 3.44003 3.47730 3.62125 3.66943 3.70420 3.74911 3.80191 3.84364 3.96520 4.08436 4.12122 4.22992 4.24591 4.39954 4.63995 4.65624 4.66872 4.77033 4.79874 4.85855 4.90485 4.99522 5.06075 5.12824 5.17705 5.32244 5.35999 5.52036 5.78777 5.81113 6.05298 6.39629 6.50308 7.26938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.058 4.058 3 Si 0.761 3.239 4 C -0.284 4.284 5 C 0.213 3.787 6 N -0.592 5.592 7 C 0.555 3.445 8 N -0.675 5.675 9 C 0.135 3.865 10 H 0.106 0.894 11 C -0.128 4.128 12 C -0.072 4.072 13 H 0.100 0.900 14 C -0.073 4.073 15 C -0.083 4.083 16 C -0.116 4.116 17 C -0.087 4.087 18 C -0.195 4.195 19 C 0.505 3.495 20 F -0.184 7.184 21 F -0.181 7.181 22 F -0.183 7.183 23 C -0.081 4.081 24 C -0.137 4.137 25 N -0.573 5.573 26 C 0.193 3.807 27 H 0.385 0.615 28 H 0.131 0.869 29 H -0.301 1.301 30 H -0.277 1.277 31 H 0.182 0.818 32 H 0.417 0.583 33 H 0.077 0.923 34 H 0.112 0.888 35 H 0.158 0.842 36 H 0.159 0.841 37 H 0.141 0.859 38 H 0.136 0.864 39 H 0.110 0.890 40 H 0.063 0.937 41 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.457 5.202 -0.387 5.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.168 4.168 3 Si 0.666 3.334 4 C -0.292 4.292 5 C 0.045 3.955 6 N -0.314 5.314 7 C 0.198 3.802 8 N -0.311 5.311 9 C 0.029 3.971 10 H 0.124 0.876 11 C -0.166 4.166 12 C -0.090 4.090 13 H 0.118 0.882 14 C -0.073 4.073 15 C -0.100 4.100 16 C -0.134 4.134 17 C -0.105 4.105 18 C -0.196 4.196 19 C 0.452 3.548 20 F -0.166 7.166 21 F -0.163 7.163 22 F -0.164 7.164 23 C -0.099 4.099 24 C -0.176 4.176 25 N -0.296 5.296 26 C 0.026 3.974 27 H 0.234 0.766 28 H 0.148 0.852 29 H -0.229 1.229 30 H -0.203 1.203 31 H 0.198 0.802 32 H 0.255 0.745 33 H 0.096 0.904 34 H 0.130 0.870 35 H 0.175 0.825 36 H 0.177 0.823 37 H 0.159 0.841 38 H 0.153 0.847 39 H 0.129 0.871 40 H 0.082 0.918 41 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 1.784 5.278 0.086 5.572 hybrid contribution -1.376 -0.902 -0.061 1.646 sum 0.409 4.376 0.024 4.395 Atomic orbital electron populations 1.86594 1.18568 1.80258 1.50130 1.24872 0.83173 1.11306 0.97454 0.94249 0.90155 0.72115 0.76909 1.21682 1.08530 0.97276 1.01696 1.23145 0.89158 0.91731 0.91447 1.67994 1.17445 1.40762 1.05197 1.19607 0.87277 0.85903 0.87391 1.43914 1.57779 1.12019 1.17390 1.21908 0.91306 0.97181 0.86711 0.87601 1.23447 0.97504 0.99363 0.96244 1.21608 0.94165 0.99425 0.93789 0.88207 1.19809 0.97837 0.92151 0.97460 1.21601 0.94279 0.99673 0.94482 1.21492 0.97815 0.97304 0.96745 1.21196 0.98344 0.91902 0.99029 1.19995 1.05132 0.91229 1.03245 1.18537 0.74283 0.86767 0.75262 1.93219 1.56127 1.89369 1.77857 1.93182 1.92452 1.96477 1.34156 1.93182 1.54603 1.73244 1.95370 1.20984 0.95287 0.99148 0.94457 1.23626 0.96555 0.98329 0.99053 1.67960 1.27653 1.08166 1.25788 1.23230 0.87687 1.00330 0.86184 0.76562 0.85172 1.22912 1.20338 0.80152 0.74460 0.90426 0.86972 0.82462 0.82330 0.84119 0.84664 0.87136 0.91826 0.79643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.27 12.85 -148.98 -1.91 -1.64 16 2 C -0.06 0.23 2.83 71.23 0.20 0.43 16 3 Si 0.76 -3.87 29.95 68.60 2.05 -1.82 16 4 C -0.28 0.48 5.36 -19.69 -0.11 0.38 16 5 C 0.21 0.24 10.99 84.71 0.93 1.17 16 6 N -0.59 -2.81 10.46 -197.99 -2.07 -4.88 16 7 C 0.55 2.04 8.43 261.48 2.20 4.24 16 8 N -0.68 0.53 5.41 -327.63 -1.77 -1.24 16 9 C 0.13 -0.59 4.34 45.58 0.20 -0.40 16 10 H 0.11 -0.30 7.37 -2.39 -0.02 -0.32 16 11 C -0.13 0.89 7.29 31.12 0.23 1.12 16 12 C -0.07 0.42 3.86 -11.01 -0.04 0.38 16 13 H 0.10 -0.57 8.09 -2.39 -0.02 -0.58 16 14 C -0.07 0.26 5.29 -19.86 -0.11 0.15 16 15 C -0.08 0.48 8.63 22.27 0.19 0.68 16 16 C -0.12 0.56 10.05 22.27 0.22 0.79 16 17 C -0.09 0.09 9.40 22.27 0.21 0.30 16 18 C -0.19 -0.35 5.45 -19.86 -0.11 -0.46 16 19 C 0.51 2.32 3.36 71.24 0.24 2.56 16 20 F -0.18 -1.21 17.30 44.97 0.78 -0.43 16 21 F -0.18 -1.00 16.46 44.97 0.74 -0.26 16 22 F -0.18 -1.06 16.46 44.97 0.74 -0.32 16 23 C -0.08 0.01 9.06 22.27 0.20 0.21 16 24 C -0.14 0.80 7.26 31.18 0.23 1.02 16 25 N -0.57 -1.52 9.13 -197.98 -1.81 -3.33 16 26 C 0.19 -0.23 9.92 84.71 0.84 0.61 16 27 H 0.39 -2.14 8.70 -74.06 -0.64 -2.79 16 28 H 0.13 -0.78 7.96 -2.39 -0.02 -0.80 16 29 H -0.30 -0.95 7.11 99.48 0.71 -0.25 16 30 H -0.28 0.51 7.02 99.48 0.70 1.21 16 31 H 0.18 -0.42 8.06 -2.91 -0.02 -0.44 16 32 H 0.42 -0.97 8.82 -92.71 -0.82 -1.79 16 33 H 0.08 -0.48 8.14 -2.39 -0.02 -0.50 16 34 H 0.11 -1.00 7.73 -2.39 -0.02 -1.02 16 35 H 0.16 -1.71 6.64 -2.91 -0.02 -1.73 16 36 H 0.16 -1.54 8.06 -2.91 -0.02 -1.57 16 37 H 0.14 -0.41 7.60 -2.91 -0.02 -0.43 16 38 H 0.14 -0.17 7.60 -2.91 -0.02 -0.20 16 39 H 0.11 -0.94 6.30 -2.39 -0.02 -0.96 16 40 H 0.06 -0.16 8.14 -2.39 -0.02 -0.18 16 41 H 0.19 -1.18 5.01 -2.91 -0.01 -1.19 16 Total: 0.00 -16.24 357.90 1.97 -14.27 By element: Atomic # 1 Polarization: -13.22 SS G_CDS: -0.31 Total: -13.53 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: 5.53 Total: 13.19 kcal Atomic # 7 Polarization: -3.80 SS G_CDS: -5.65 Total: -9.45 kcal Atomic # 8 Polarization: 0.27 SS G_CDS: -1.91 Total: -1.64 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 2.26 Total: -1.01 kcal Atomic # 14 Polarization: -3.87 SS G_CDS: 2.05 Total: -1.82 kcal Total: -16.24 1.97 -14.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_9705320_12175864.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.814 kcal (2) G-P(sol) polarization free energy of solvation -16.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds